IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2095	 56.78	0	1938361..1938795	+	144	145592361	-	Pars_2165	-	hypothetical protein
2096	 53.75	0	1938792..1939124	-	110	145592362	-	Pars_2166	-	HEPN domain-containing protein
2097	 55.35	0	1939136..1939771	-	211	145592363	-	Pars_2167	-	superoxide dismutase
2098	 50.78	0	1939810..1940130	-	106	145592364	-	Pars_2168	-	hypothetical protein
2099	 49.43	-1	1940198..1940458	+	86	145592365	-	Pars_2169	-	hypothetical protein
2100	 53.17	0	1940449..1941300	+	283	145592366	-	Pars_2170	-	hypothetical protein
2101	 55.25	0	1941595..1942365	-	256	145592367	-	Pars_2171	-	ABC-2 type transporter
2102	 59.01	0	1942362..1943315	-	317	145592368	-	Pars_2172	-	daunorubicin resistance ABC transporter ATPase subunit
2103	 54.55	0	1943399..1943761	+	120	145592369	-	Pars_2173	-	hypothetical protein
2104	 58.28	0	1944073..1944561	+	162	145592370	-	Pars_2174	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2105	 61.25	+1	1944637..1945725	+	362	145592371	-	Pars_2175	-	phosphoribosylaminoimidazole carboxylase
2106	 59.91	0	1945715..1946365	-	216	145592372	-	Pars_2176	-	hypothetical protein
2107	 64.30	+1	1946398..1947663	-	421	145592373	-	Pars_2177	-	amidophosphoribosyltransferase
2108	 64.23	+1	1947665..1949758	-	697	145592374	-	Pars_2178	-	phosphoribosylformylglycinamidine synthase II
2109	 55.01	0	1950238..1950786	+	182	145592375	-	Pars_2179	-	hypothetical protein
2110	 55.68	0	1951206..1951733	-	175	145592376	-	Pars_2180	-	hypothetical protein
2111	 54.67	0	1951714..1953780	-	688	145592377	-	Pars_2181	-	hypothetical protein
2112	 64.47	+1	1953839..1954474	-	211	145592378	-	Pars_2182	-	phosphoribosylformylglycinamidine synthase I
2113	 63.53	+1	1954471..1954725	-	84	145592379	-	Pars_2183	-	hypothetical protein
2114	 57.63	0	1954948..1955478	-	176	145592380	-	Pars_2184	-	hypothetical protein
2115	 54.88	0	1955488..1957692	-	734	145592381	-	Pars_2185	-	hypothetical protein
2116	 60.72	+1	1958464..1959102	+	212	145592382	-	Pars_2186	-	TenA family transcription regulator
2117	 63.45	+1	1959089..1959679	+	196	145592383	-	Pars_2187	-	TenA family transcription regulator
2118	 55.70	0	1960046..1960501	-	151	145592384	-	Pars_2188	-	PaREP1 domain-containing protein
2119	 64.02	+1	1960679..1962112	+	477	145592385	-	Pars_2189	-	phosphoribosylamine--glycine ligase
2120	 62.80	+1	1962114..1963250	+	378	145592386	-	Pars_2190	-	amidophosphoribosyltransferase
2121	 55.91	0	1963247..1964176	-	309	145592387	-	Pars_2191	-	phosphoribosylaminoimidazole synthetase
2122	 57.69	0	1964173..1965108	-	311	145592388	-	Pars_2192	-	tetrahydrofolate dehydrogenase/cyclohydrolase
2123	 57.21	0	1965093..1965917	-	274	145592389	-	Pars_2193	-	formyl transferase domain-containing protein
2124	 56.31	0	1966212..1966916	-	234	145592390	-	Pars_2194	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2125	 62.70	+1	1967536..1968795	+	419	145592391	-	Pars_2195	-	major facilitator transporter
2126	 60.61	+1	1968792..1969385	-	197	145592392	-	Pars_2196	-	peptidase S26B, signal peptidase
2127	 61.06	+1	1969414..1969752	-	112	145592393	-	Pars_2197	-	hypothetical protein
2128	 58.98	0	1969749..1970750	-	333	145592394	-	Pars_2198	-	band 7 protein
2129	 57.40	0	1970773..1971387	-	204	145592395	-	Pars_2199	-	methyltransferase small
2130	 57.59	0	1971515..1973155	+	546	145592396	-	Pars_2200	-	AMP-dependent synthetase and ligase
2131	 52.53	0	1973230..1973922	-	230	145592397	-	Pars_2201	-	hypothetical protein
2132	 57.41	0	1974032..1974463	-	143	145592398	-	Pars_2202	-	NUDIX hydrolase
2133	 56.67	0	1975022..1975261	+	79	145592399	-	Pars_2203	-	hypothetical protein
2134	 59.94	0	1975543..1976553	-	336	145592400	-	Pars_2204	-	hypothetical protein
2135	 64.98	+1	1976960..1977433	+	157	145592401	-	Pars_2205	-	NUDIX hydrolase
2136	 58.59	0	1977488..1978564	+	358	145592402	-	Pars_2206	-	tRNA-modifying enzyme
2137	 46.91	-1	1979124..1979867	+	247	145592403	fabG	Pars_2207	-	3-ketoacyl-(acyl-carrier-protein) reductase
2138	 54.05	0	1979987..1981024	-	345	145592404	-	Pars_2208	-	small GTP-binding protein
2139	 56.11	0	1981068..1981853	+	261	145592405	-	Pars_2209	-	hypothetical protein
2140	 59.12	0	1982493..1983539	-	348	145592406	-	Pars_2210	-	RNA 3'-terminal-phosphate cyclase
2141	 53.76	0	1983592..1984203	+	203	145592407	-	Pars_2211	-	proteasome endopeptidase complex
2142	 56.11	0	1984265..1985164	-	299	145592408	-	Pars_2212	-	electron transfer flavoprotein, alpha subunit
2143	 56.94	0	1985161..1985931	-	256	145592409	-	Pars_2213	-	electron transfer flavoprotein beta-subunit
2144	 53.65	0	1986294..1986485	-	63	145592410	-	Pars_2214	-	hypothetical protein
2145	 58.69	0	1986530..1986880	-	116	145592411	-	Pars_2215	-	HEPN domain-containing protein
2146	 40.86	-2	1987143..1987421	-	92	145592412	-	Pars_2216	-	metallo cofactor biosynthesis protein, conjectural
2147	 53.41	0	1987498..1988010	+	170	145592413	-	Pars_2217	-	hypothetical protein
2148	 59.51	0	1987995..1988735	+	246	145592414	-	Pars_2218	-	abortive infection protein
2149	 56.31	0	1988910..1990154	-	414	145592415	-	Pars_2219	-	Fmu (Sun) domain-containing protein
2150	 59.76	0	1990151..1990657	-	168	145592416	-	Pars_2220	-	phosphodiesterase
2151	 56.11	0	1990916..1991455	-	179	145592417	rpl5p	Pars_2221	-	50S ribosomal protein L5P
2152	 53.51	0	1991803..1992258	-	151	145592418	-	Pars_2222	-	PaREP1 domain-containing protein
2153	 55.60	0	1992596..1993417	-	273	145592419	-	Pars_2223	-	hypothetical protein
2154	 59.13	0	1993492..1994088	+	198	145592420	-	Pars_2224	-	hypothetical protein
2155	 51.28	0	1994085..1994825	-	246	145592421	-	Pars_2225	-	hypothetical protein
2156	 57.74	0	1994794..1995342	-	182	145592422	rpl10e	Pars_2226	-	50S ribosomal protein L10e
2157	 53.75	0	1995363..1995749	-	128	145592423	nac	Pars_2227	-	nascent polypeptide-associated complex protein
2158	 58.34	0	1995746..1998424	-	892	145592424	alaS	Pars_2228	-	alanyl-tRNA synthetase
2159	 50.26	0	1998469..1998858	+	129	145592425	-	Pars_2229	-	hypothetical protein
2160	 55.41	0	1998831..1999052	-	73	145592426	-	Pars_2230	-	DNA-directed RNA polymerase subunit E, RpoE2
2161	 52.26	0	1999049..1999624	-	191	145592427	-	Pars_2231	-	DNA-directed RNA polymerase subunit E'
2162	 37.50	-2	1999921..2000328	-	135	145592428	-	Pars_2232	-	hypothetical protein
2163	 50.57	0	2000370..2001674	+	434	145592429	-	Pars_2233	-	malate dehydrogenase
2164	 53.74	0	2001690..2002919	-	409	145592430	-	Pars_2234	-	2-methylcitrate synthase/citrate synthase II
2165	 53.19	0	2003060..2003623	-	187	145592431	-	Pars_2235	-	hypothetical protein
2166	 55.36	0	2003681..2005033	+	450	145592432	-	Pars_2236	-	TIP49-like protein
2167	 49.35	-1	2005025..2005486	-	153	145592433	-	Pars_2237	-	hypothetical protein
2168	 53.02	0	2005483..2006991	-	502	145592434	-	Pars_2238	-	peptidase M50
2169	 55.77	0	2007055..2007972	-	305	145592435	-	Pars_2239	-	cation diffusion facilitator family transporter
2170	 57.73	0	2007974..2008723	-	249	145592436	-	Pars_2240	-	indole-3-glycerol-phosphate synthase
2171	 58.45	0	2008791..2009447	+	218	145592437	-	Pars_2241	-	hypothetical protein
2172	 60.74	+1	2009425..2010234	-	269	145592438	-	Pars_2242	-	undecaprenyl pyrophosphate phosphatase
2173	 53.88	0	2010272..2010748	+	158	145592439	-	Pars_2243	-	hypothetical protein
2174	 56.26	0	2011068..2012210	+	380	145592440	-	Pars_2244	-	radical SAM domain-containing protein
2175	 56.49	0	2012207..2013100	+	297	145592441	-	Pars_2245	-	porphobilinogen deaminase
2176	 57.00	0	2013097..2014068	-	323	145592442	-	Pars_2246	-	AsnC family transcriptional regulator
2177	 59.29	0	2014893..2015909	-	338	145592443	-	Pars_2247	-	delta-aminolevulinic acid dehydratase
2178	 55.09	0	2015916..2016563	-	215	145592444	-	Pars_2248	-	siroheme synthase
2179	 53.85	0	2016594..2016788	-	64	145592445	-	Pars_2249	-	hypothetical protein
2180	 57.66	0	2016815..2017447	-	210	145592446	-	Pars_2250	-	uroporphyrinogen III synthase HEM4
2181	 57.24	0	2017598..2018371	-	257	145592447	-	Pars_2251	-	uroporphyrin-III C-methyltransferase
2182	 43.50	-2	2018565..2018987	+	140	145592448	-	Pars_2252	-	hypothetical protein
2183	 51.85	0	2018991..2019854	+	287	145592449	-	Pars_2253	-	hypothetical protein
2184	 60.22	0	2019890..2021161	+	423	145592450	-	Pars_2254	-	glutamate-1-semialdehyde-2,1-aminomutase
2185	 59.19	0	2021165..2022274	+	369	145592451	-	Pars_2255	-	radical SAM domain-containing protein
2186	 51.41	0	2022330..2022578	+	82	145592452	-	Pars_2256	-	hypothetical protein
2187	 58.01	0	2022608..2023150	+	180	145592453	-	Pars_2257	-	hypothetical protein
2188	 61.75	+1	2023380..2023664	-	94	145592454	-	Pars_2258	-	paREP2b
2189	 58.00	0	2023918..2025129	-	403	145592455	-	Pars_2261	-	glutamyl-tRNA reductase
2190	 59.39	0	2025209..2026252	+	347	145592456	purP	Pars_2262	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
2191	 56.32	0	2026242..2026502	-	86	145592457	-	Pars_2263	-	hypothetical protein
2192	 48.19	-1	2026568..2026843	+	91	145592458	-	Pars_2264	-	hypothetical protein
2193	 54.07	0	2026871..2027878	-	335	145592459	purP	Pars_2265	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
2194	 52.44	0	2028062..2029066	+	334	145592460	-	Pars_2266	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.