IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2037	 58.66	0	1882709..1883695	-	328	145592303	-	Pars_2107	-	3-deoxy-7-phosphoheptulonate synthase
2038	 55.56	0	1883720..1884664	-	314	145592304	-	Pars_2108	-	tyrosyl-tRNA synthetase
2039	 58.49	0	1884762..1885568	+	268	145592305	-	Pars_2109	-	transketolase domain-containing protein
2040	 57.78	0	1885562..1886506	+	314	145592306	-	Pars_2110	-	transketolase, central region
2041	 60.29	0	1886503..1887522	+	339	145592307	aroB	Pars_2111	-	3-dehydroquinate synthase
2042	 61.65	+1	1887509..1888705	+	398	145592308	-	Pars_2112	-	3-phosphoshikimate 1-carboxyvinyltransferase
2043	 56.61	0	1888723..1889667	+	314	145592309	-	Pars_2113	-	NAD-dependent epimerase/dehydratase
2044	 56.83	0	1889725..1890720	-	331	145592310	-	Pars_2114	-	putative alcohol dehydrogenase
2045	 55.29	0	1890749..1891864	-	371	145592311	-	Pars_2115	-	PhoH family protein
2046	 60.34	0	1891913..1892323	+	136	145592312	-	Pars_2116	-	NUDIX hydrolase
2047	 56.72	0	1892306..1893049	-	247	145592313	-	Pars_2117	-	NADP oxidoreductase, coenzyme F420-dependent
2048	 60.84	+1	1893381..1894169	+	262	145592314	-	Pars_2118	-	shikimate 5-dehydrogenase
2049	 62.15	+1	1894166..1895272	+	368	145592315	-	Pars_2119	-	chorismate synthase
2050	 55.31	0	1895289..1896512	-	407	145592316	-	Pars_2120	-	NADH dehydrogenase subunit D
2051	 56.82	0	1896539..1897432	+	297	145592317	-	Pars_2121	-	hypothetical protein
2052	 55.56	0	1897676..1898314	+	212	145592318	folE	Pars_2122	-	GTP cyclohydrolase I
2053	 57.93	0	1898311..1898985	+	224	145592319	-	Pars_2123	-	short-chain dehydrogenase/reductase SDR
2054	 49.77	0	1898933..1900234	-	433	145592320	-	Pars_2124	-	hypothetical protein
2055	 47.56	-1	1900437..1900907	+	156	145592321	-	Pars_2125	-	AsnC/Lrp family regulatory protein
2056	 45.30	-1	1900919..1901620	-	233	145592322	-	Pars_2126	-	hypothetical protein
2057	 55.62	0	1901700..1904171	+	823	145592323	-	Pars_2127	-	peptidase M1, membrane alanine aminopeptidase
2058	 55.66	0	1904172..1904807	+	211	145592324	upp	Pars_2128	-	uracil phosphoribosyltransferase
2059	 48.05	-1	1904804..1905394	-	196	145592325	-	Pars_2129	-	peptidase A24A, prepilin type IV
2060	 55.15	0	1905387..1906289	-	300	145592326	-	Pars_2130	-	bifunctional phosphoglucose/phosphomannose isomerase
2061	 46.67	-1	1906308..1906622	-	104	145592327	-	Pars_2131	-	hypothetical protein
2062	 46.02	-1	1906701..1907228	+	175	145592328	-	Pars_2132	-	zinc finger TFIIB-type domain-containing protein
2063	 50.19	0	1907200..1908231	+	343	145592329	-	Pars_2133	-	type II secretion system protein E
2064	 48.80	-1	1908221..1908763	+	180	145592330	-	Pars_2134	-	hypothetical protein
2065	 54.75	0	1908760..1910412	-	550	145592331	-	Pars_2135	-	thermosome
2066	 54.10	0	1910820..1912148	+	442	145592332	-	Pars_2136	-	periplasmic binding protein
2067	 59.31	0	1912145..1913068	+	307	145592333	-	Pars_2137	-	transport system permease protein
2068	 52.31	0	1913046..1913693	+	215	145592334	-	Pars_2138	-	ABC transporter related
2069	 56.77	0	1913983..1916205	+	740	145592335	-	Pars_2139	-	elongation factor EF-2
2070	 54.38	0	1916517..1917533	+	338	145592336	-	Pars_2140	-	ABC transporter periplasmic-binding protein
2071	 57.92	0	1917506..1918945	+	479	145592337	-	Pars_2141	-	putative thiamine transport system permease protein
2072	 54.79	0	1918942..1919859	-	305	145592338	-	Pars_2142	-	ABC transporter related
2073	 48.89	-1	1919860..1920444	-	194	145592339	-	Pars_2143	-	hypothetical protein
2074	 42.80	-2	1920678..1921205	-	175	145592340	-	Pars_2144	-	hypothetical protein
2075	 50.79	0	1921305..1922564	+	419	145592341	-	Pars_2145	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2076	 48.38	-1	1922557..1922895	-	112	145592342	-	Pars_2146	-	siroheme-sulfite reductase gamma subunit-like protein
2077	 54.86	0	1923056..1924207	-	383	145592343	-	Pars_2147	-	amidohydrolase
2078	 53.46	0	1924208..1925350	-	380	145592344	-	Pars_2148	-	AAA ATPase
2079	 56.16	0	1925371..1926969	-	532	145592345	-	Pars_2149	-	alpha amylase, catalytic region
2080	 52.12	0	1927012..1927341	+	109	145592346	-	Pars_2150	-	GTP cyclohydrolase I
2081	 59.64	0	1927338..1928063	-	241	145592347	-	Pars_2151	-	ABC-2 type transport system, membrane protein
2082	 56.11	0	1928050..1928958	-	302	145592348	-	Pars_2152	-	ABC transporter related
2083	 52.00	0	1929019..1929243	+	74	145592349	-	Pars_2153	-	hypothetical protein
2084	 55.56	0	1929358..1931310	+	650	145592350	-	Pars_2154	-	type III restriction enzyme, res subunit
2085	 46.32	-1	1931294..1931878	-	194	145592351	-	Pars_2155	-	putative transcriptional regulator
2086	 54.07	0	1931982..1932656	+	224	145592352	-	Pars_2156	-	hypothetical protein
2087	 52.70	0	1932660..1932974	+	104	145592353	-	Pars_2157	-	hypothetical protein
2088	 56.91	0	1933022..1934077	-	351	145592354	-	Pars_2158	-	amidohydrolase
2089	 54.21	0	1934074..1934643	-	189	145592355	-	Pars_2159	-	hypothetical protein
2090	 56.95	0	1934701..1935657	+	318	145592356	-	Pars_2160	-	hypothetical protein
2091	 55.65	0	1935718..1936071	+	117	145592357	-	Pars_2161	-	HEPN domain-containing protein
2092	 57.10	0	1936068..1936412	+	114	145592358	-	Pars_2162	-	DNA polymerase beta subunit
2093	 54.69	0	1936462..1936887	+	141	145592359	-	Pars_2163	-	hypothetical protein
2094	 47.53	-1	1936978..1937928	+	316	145592360	-	Pars_2164	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2095	 56.78	0	1938361..1938795	+	144	145592361	-	Pars_2165	-	hypothetical protein
2096	 53.75	0	1938792..1939124	-	110	145592362	-	Pars_2166	-	HEPN domain-containing protein
2097	 55.35	0	1939136..1939771	-	211	145592363	-	Pars_2167	-	superoxide dismutase
2098	 50.78	0	1939810..1940130	-	106	145592364	-	Pars_2168	-	hypothetical protein
2099	 49.43	-1	1940198..1940458	+	86	145592365	-	Pars_2169	-	hypothetical protein
2100	 53.17	0	1940449..1941300	+	283	145592366	-	Pars_2170	-	hypothetical protein
2101	 55.25	0	1941595..1942365	-	256	145592367	-	Pars_2171	-	ABC-2 type transporter
2102	 59.01	0	1942362..1943315	-	317	145592368	-	Pars_2172	-	daunorubicin resistance ABC transporter ATPase subunit
2103	 54.55	0	1943399..1943761	+	120	145592369	-	Pars_2173	-	hypothetical protein
2104	 58.28	0	1944073..1944561	+	162	145592370	-	Pars_2174	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2105	 61.25	+1	1944637..1945725	+	362	145592371	-	Pars_2175	-	phosphoribosylaminoimidazole carboxylase
2106	 59.91	0	1945715..1946365	-	216	145592372	-	Pars_2176	-	hypothetical protein
2107	 64.30	+1	1946398..1947663	-	421	145592373	-	Pars_2177	-	amidophosphoribosyltransferase
2108	 64.23	+1	1947665..1949758	-	697	145592374	-	Pars_2178	-	phosphoribosylformylglycinamidine synthase II
2109	 55.01	0	1950238..1950786	+	182	145592375	-	Pars_2179	-	hypothetical protein
2110	 55.68	0	1951206..1951733	-	175	145592376	-	Pars_2180	-	hypothetical protein
2111	 54.67	0	1951714..1953780	-	688	145592377	-	Pars_2181	-	hypothetical protein
2112	 64.47	+1	1953839..1954474	-	211	145592378	-	Pars_2182	-	phosphoribosylformylglycinamidine synthase I
2113	 63.53	+1	1954471..1954725	-	84	145592379	-	Pars_2183	-	hypothetical protein
2114	 57.63	0	1954948..1955478	-	176	145592380	-	Pars_2184	-	hypothetical protein
2115	 54.88	0	1955488..1957692	-	734	145592381	-	Pars_2185	-	hypothetical protein
2116	 60.72	+1	1958464..1959102	+	212	145592382	-	Pars_2186	-	TenA family transcription regulator
2117	 63.45	+1	1959089..1959679	+	196	145592383	-	Pars_2187	-	TenA family transcription regulator
2118	 55.70	0	1960046..1960501	-	151	145592384	-	Pars_2188	-	PaREP1 domain-containing protein
2119	 64.02	+1	1960679..1962112	+	477	145592385	-	Pars_2189	-	phosphoribosylamine--glycine ligase
2120	 62.80	+1	1962114..1963250	+	378	145592386	-	Pars_2190	-	amidophosphoribosyltransferase
2121	 55.91	0	1963247..1964176	-	309	145592387	-	Pars_2191	-	phosphoribosylaminoimidazole synthetase
2122	 57.69	0	1964173..1965108	-	311	145592388	-	Pars_2192	-	tetrahydrofolate dehydrogenase/cyclohydrolase
2123	 57.21	0	1965093..1965917	-	274	145592389	-	Pars_2193	-	formyl transferase domain-containing protein
2124	 56.31	0	1966212..1966916	-	234	145592390	-	Pars_2194	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2125	 62.70	+1	1967536..1968795	+	419	145592391	-	Pars_2195	-	major facilitator transporter
2126	 60.61	+1	1968792..1969385	-	197	145592392	-	Pars_2196	-	peptidase S26B, signal peptidase
2127	 61.06	+1	1969414..1969752	-	112	145592393	-	Pars_2197	-	hypothetical protein
2128	 58.98	0	1969749..1970750	-	333	145592394	-	Pars_2198	-	band 7 protein
2129	 57.40	0	1970773..1971387	-	204	145592395	-	Pars_2199	-	methyltransferase small
2130	 57.59	0	1971515..1973155	+	546	145592396	-	Pars_2200	-	AMP-dependent synthetase and ligase
2131	 52.53	0	1973230..1973922	-	230	145592397	-	Pars_2201	-	hypothetical protein
2132	 57.41	0	1974032..1974463	-	143	145592398	-	Pars_2202	-	NUDIX hydrolase
2133	 56.67	0	1975022..1975261	+	79	145592399	-	Pars_2203	-	hypothetical protein
2134	 59.94	0	1975543..1976553	-	336	145592400	-	Pars_2204	-	hypothetical protein
2135	 64.98	+1	1976960..1977433	+	157	145592401	-	Pars_2205	-	NUDIX hydrolase
2136	 58.59	0	1977488..1978564	+	358	145592402	-	Pars_2206	-	tRNA-modifying enzyme
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.