IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1990	 62.41	+1	1841959..1843743	+	594	145592256	-	Pars_2060	-	hypothetical protein
1991	 57.96	0	1843733..1844203	+	156	145592257	-	Pars_2061	-	archaemetzincin-like protein
1992	 56.73	0	1844185..1844667	-	160	145592258	leuD	Pars_2062	-	3-isopropylmalate dehydratase small subunit
1993	 54.79	0	1844745..1845914	+	389	145592259	-	Pars_2063	-	trans-homoaconitate synthase
1994	 54.09	0	1845904..1846881	+	325	145592260	-	Pars_2064	-	3-isopropylmalate dehydrogenase
1995	 51.71	0	1847000..1848283	+	427	145592261	-	Pars_2065	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
1996	 47.34	-1	1848280..1848486	-	68	145592262	-	Pars_2066	-	hypothetical protein
1997	 50.39	0	1848516..1848896	-	126	145592263	-	Pars_2067	-	hypothetical protein
1998	 52.50	0	1848944..1849543	+	199	145592264	-	Pars_2068	-	polar amino acid ABC transporter, inner membrane subunit
1999	 54.83	0	1849639..1850373	+	244	145592265	-	Pars_2069	-	ABC transporter related
2000	 61.87	+1	1850392..1852248	+	618	145592266	-	Pars_2070	-	molydopterin dinucleotide-binding region
2001	 57.87	0	1852273..1852977	+	234	145592267	-	Pars_2071	-	TatD-related deoxyribonuclease
2002	 56.19	0	1852965..1853804	+	279	145592268	-	Pars_2072	-	bis(5'nucleosyl)-tetraphosphatase, ApaH
2003	 54.73	0	1854070..1856238	+	722	145592269	-	Pars_2073	-	hypothetical protein
2004	 55.50	0	1856238..1856828	+	196	145592270	-	Pars_2074	-	hypothetical protein
2005	 56.69	0	1856968..1857498	-	176	145592271	dcd	Pars_2075	-	deoxycytidine triphosphate deaminase
2006	 58.33	0	1857593..1858096	+	167	145592272	-	Pars_2076	-	hypothetical protein
2007	 56.41	0	1858093..1858365	-	90	145592273	-	Pars_2077	-	hypothetical protein
2008	 63.31	+1	1858395..1858841	+	148	145592274	-	Pars_2078	-	methylated-DNA--protein-cysteine methyltransferase
2009	 60.17	0	1858874..1859104	+	76	145592275	-	Pars_2079	-	ferredoxin
2010	 59.81	0	1859101..1859727	+	208	145592276	-	Pars_2080	-	hydrolase
2011	 51.12	0	1859800..1860693	+	297	145592277	-	Pars_2081	-	phosphate uptake regulator, PhoU
2012	 56.57	0	1860690..1861382	+	230	145592278	-	Pars_2082	-	hypothetical protein
2013	 54.68	0	1861611..1862069	-	152	145592279	-	Pars_2083	-	riboflavin synthase
2014	 56.91	0	1862114..1862482	+	122	145592280	-	Pars_2084	-	CopG family transcriptional regulator
2015	 58.13	0	1862479..1862853	+	124	145592281	-	Pars_2085	-	hypothetical protein
2016	 58.13	0	1862850..1863821	+	323	145592282	-	Pars_2086	-	peptidase M24
2017	 57.67	0	1863818..1864117	-	99	145592283	-	Pars_2087	-	hypothetical protein
2018	 51.79	0	1864761..1865123	+	120	145592284	-	Pars_2088	-	putative regulatory protein
2019	 58.35	0	1865120..1866454	-	444	145592285	-	Pars_2089	-	D-lactate dehydrogenase (cytochrome)
2020	 54.20	0	1866755..1867123	-	122	145592286	-	Pars_2090	-	hypothetical protein
2021	 60.72	+1	1867432..1868289	+	285	145592287	-	Pars_2091	-	TatD-related deoxyribonuclease
2022	 54.74	0	1868344..1870146	+	600	145592288	-	Pars_2092	-	aldehyde ferredoxin oxidoreductase
2023	 59.42	0	1870143..1871357	-	404	145592289	-	Pars_2093	-	DegT/DnrJ/EryC1/StrS aminotransferase
2024	 57.53	0	1871387..1871824	+	145	145592290	-	Pars_2094	-	hypothetical protein
2025	 55.47	0	1871821..1872204	-	127	145592291	-	Pars_2095	-	hypothetical protein
2026	 59.62	0	1872261..1872473	-	70	145592292	-	Pars_2096	-	hypothetical protein
2027	 62.11	+1	1872651..1874141	+	496	145592293	-	Pars_2097	-	alpha-isopropylmalate/homocitrate synthase family transferase
2028	 62.16	+1	1874138..1874536	-	132	145592294	-	Pars_2098	-	thioesterase superfamily protein
2029	 65.76	+1	1874549..1875760	-	403	145592295	-	Pars_2099	-	VWA containing CoxE family protein
2030	 60.00	0	1875828..1877027	-	399	145592296	-	Pars_2100	-	hypothetical protein
2031	 50.44	0	1878147..1878596	-	149	145592297	-	Pars_2101	-	hypothetical protein
2032	 56.24	0	1878577..1879161	-	194	145592298	-	Pars_2102	-	hypothetical protein
2033	 58.05	0	1879189..1880406	+	405	145592299	-	Pars_2103	-	acyl-CoA dehydrogenase domain-containing protein
2034	 55.41	0	1880424..1881116	+	230	145592300	-	Pars_2104	-	adenine phosphoribosyltransferase
2035	 52.76	0	1881147..1881563	+	138	145592301	-	Pars_2105	-	signal-transduction protein
2036	 58.93	0	1881560..1882360	+	266	145592302	-	Pars_2106	-	ExsB family protein
2037	 58.66	0	1882709..1883695	-	328	145592303	-	Pars_2107	-	3-deoxy-7-phosphoheptulonate synthase
2038	 55.56	0	1883720..1884664	-	314	145592304	-	Pars_2108	-	tyrosyl-tRNA synthetase
2039	 58.49	0	1884762..1885568	+	268	145592305	-	Pars_2109	-	transketolase domain-containing protein
2040	 57.78	0	1885562..1886506	+	314	145592306	-	Pars_2110	-	transketolase, central region
2041	 60.29	0	1886503..1887522	+	339	145592307	aroB	Pars_2111	-	3-dehydroquinate synthase
2042	 61.65	+1	1887509..1888705	+	398	145592308	-	Pars_2112	-	3-phosphoshikimate 1-carboxyvinyltransferase
2043	 56.61	0	1888723..1889667	+	314	145592309	-	Pars_2113	-	NAD-dependent epimerase/dehydratase
2044	 56.83	0	1889725..1890720	-	331	145592310	-	Pars_2114	-	putative alcohol dehydrogenase
2045	 55.29	0	1890749..1891864	-	371	145592311	-	Pars_2115	-	PhoH family protein
2046	 60.34	0	1891913..1892323	+	136	145592312	-	Pars_2116	-	NUDIX hydrolase
2047	 56.72	0	1892306..1893049	-	247	145592313	-	Pars_2117	-	NADP oxidoreductase, coenzyme F420-dependent
2048	 60.84	+1	1893381..1894169	+	262	145592314	-	Pars_2118	-	shikimate 5-dehydrogenase
2049	 62.15	+1	1894166..1895272	+	368	145592315	-	Pars_2119	-	chorismate synthase
2050	 55.31	0	1895289..1896512	-	407	145592316	-	Pars_2120	-	NADH dehydrogenase subunit D
2051	 56.82	0	1896539..1897432	+	297	145592317	-	Pars_2121	-	hypothetical protein
2052	 55.56	0	1897676..1898314	+	212	145592318	folE	Pars_2122	-	GTP cyclohydrolase I
2053	 57.93	0	1898311..1898985	+	224	145592319	-	Pars_2123	-	short-chain dehydrogenase/reductase SDR
2054	 49.77	0	1898933..1900234	-	433	145592320	-	Pars_2124	-	hypothetical protein
2055	 47.56	-1	1900437..1900907	+	156	145592321	-	Pars_2125	-	AsnC/Lrp family regulatory protein
2056	 45.30	-1	1900919..1901620	-	233	145592322	-	Pars_2126	-	hypothetical protein
2057	 55.62	0	1901700..1904171	+	823	145592323	-	Pars_2127	-	peptidase M1, membrane alanine aminopeptidase
2058	 55.66	0	1904172..1904807	+	211	145592324	upp	Pars_2128	-	uracil phosphoribosyltransferase
2059	 48.05	-1	1904804..1905394	-	196	145592325	-	Pars_2129	-	peptidase A24A, prepilin type IV
2060	 55.15	0	1905387..1906289	-	300	145592326	-	Pars_2130	-	bifunctional phosphoglucose/phosphomannose isomerase
2061	 46.67	-1	1906308..1906622	-	104	145592327	-	Pars_2131	-	hypothetical protein
2062	 46.02	-1	1906701..1907228	+	175	145592328	-	Pars_2132	-	zinc finger TFIIB-type domain-containing protein
2063	 50.19	0	1907200..1908231	+	343	145592329	-	Pars_2133	-	type II secretion system protein E
2064	 48.80	-1	1908221..1908763	+	180	145592330	-	Pars_2134	-	hypothetical protein
2065	 54.75	0	1908760..1910412	-	550	145592331	-	Pars_2135	-	thermosome
2066	 54.10	0	1910820..1912148	+	442	145592332	-	Pars_2136	-	periplasmic binding protein
2067	 59.31	0	1912145..1913068	+	307	145592333	-	Pars_2137	-	transport system permease protein
2068	 52.31	0	1913046..1913693	+	215	145592334	-	Pars_2138	-	ABC transporter related
2069	 56.77	0	1913983..1916205	+	740	145592335	-	Pars_2139	-	elongation factor EF-2
2070	 54.38	0	1916517..1917533	+	338	145592336	-	Pars_2140	-	ABC transporter periplasmic-binding protein
2071	 57.92	0	1917506..1918945	+	479	145592337	-	Pars_2141	-	putative thiamine transport system permease protein
2072	 54.79	0	1918942..1919859	-	305	145592338	-	Pars_2142	-	ABC transporter related
2073	 48.89	-1	1919860..1920444	-	194	145592339	-	Pars_2143	-	hypothetical protein
2074	 42.80	-2	1920678..1921205	-	175	145592340	-	Pars_2144	-	hypothetical protein
2075	 50.79	0	1921305..1922564	+	419	145592341	-	Pars_2145	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2076	 48.38	-1	1922557..1922895	-	112	145592342	-	Pars_2146	-	siroheme-sulfite reductase gamma subunit-like protein
2077	 54.86	0	1923056..1924207	-	383	145592343	-	Pars_2147	-	amidohydrolase
2078	 53.46	0	1924208..1925350	-	380	145592344	-	Pars_2148	-	AAA ATPase
2079	 56.16	0	1925371..1926969	-	532	145592345	-	Pars_2149	-	alpha amylase, catalytic region
2080	 52.12	0	1927012..1927341	+	109	145592346	-	Pars_2150	-	GTP cyclohydrolase I
2081	 59.64	0	1927338..1928063	-	241	145592347	-	Pars_2151	-	ABC-2 type transport system, membrane protein
2082	 56.11	0	1928050..1928958	-	302	145592348	-	Pars_2152	-	ABC transporter related
2083	 52.00	0	1929019..1929243	+	74	145592349	-	Pars_2153	-	hypothetical protein
2084	 55.56	0	1929358..1931310	+	650	145592350	-	Pars_2154	-	type III restriction enzyme, res subunit
2085	 46.32	-1	1931294..1931878	-	194	145592351	-	Pars_2155	-	putative transcriptional regulator
2086	 54.07	0	1931982..1932656	+	224	145592352	-	Pars_2156	-	hypothetical protein
2087	 52.70	0	1932660..1932974	+	104	145592353	-	Pars_2157	-	hypothetical protein
2088	 56.91	0	1933022..1934077	-	351	145592354	-	Pars_2158	-	amidohydrolase
2089	 54.21	0	1934074..1934643	-	189	145592355	-	Pars_2159	-	hypothetical protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.