IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1847	 53.54	0	1721603..1722676	+	357	145592113	-	Pars_1916	-	VWA containing CoxE family protein
1848	 55.33	0	1722707..1723756	+	349	145592114	-	Pars_1917	-	DNA primase large subunit
1849	 56.11	0	1723722..1724498	+	258	145592115	-	Pars_1918	-	N-glycosylase/DNA lyase
1850	 59.54	0	1724723..1725073	-	116	145592116	-	Pars_1919	-	hypothetical protein
1851	 55.53	0	1725066..1726187	-	373	145592117	-	Pars_1920	-	hypothetical protein
1852	 57.36	0	1726271..1727548	-	425	145592118	-	Pars_1921	-	UbiD family decarboxylase
1853	 52.60	0	1727581..1727907	-	108	145592119	-	Pars_1922	-	chromatin protein
1854	 51.13	0	1727924..1730215	-	763	145592120	-	Pars_1923	-	hypothetical protein
1855	 54.40	0	1730280..1731086	+	268	145592121	-	Pars_1924	-	regulatory protein, ArsR
1856	 53.61	0	1731086..1731583	+	165	145592122	-	Pars_1925	-	hypothetical protein
1857	 52.06	0	1731573..1732565	-	330	145592123	-	Pars_1926	-	phosphate uptake regulator, PhoU
1858	 53.80	0	1732775..1733878	-	367	145592124	-	Pars_1927	-	DNA topoisomerase VI subunit A
1859	 54.76	0	1733971..1735557	-	528	145592125	-	Pars_1928	-	DNA topoisomerase VI subunit B
1860	 55.46	0	1735661..1736392	+	243	145592126	-	Pars_1929	-	proteasome subunit alpha
1861	 50.59	0	1736389..1736643	-	84	145592127	-	Pars_1930	-	hypothetical protein
1862	 50.60	0	1736689..1737105	+	138	145592128	-	Pars_1931	-	hypothetical protein
1863	 49.33	-1	1737120..1737344	+	74	145592129	-	Pars_1932	-	hypothetical protein
1864	 51.08	0	1737360..1738283	-	307	145592130	-	Pars_1933	-	hypothetical protein
1865	 51.72	0	1738323..1739192	+	289	145592131	-	Pars_1934	-	hypothetical protein
1866	 49.50	-1	1739247..1739945	+	232	145592132	-	Pars_1935	-	putative RNA-associated protein
1867	 52.36	0	1739948..1740646	+	232	145592133	-	Pars_1936	-	exosome complex RNA-binding protein Rrp4
1868	 54.12	0	1740842..1741582	+	246	145592134	-	Pars_1937	-	exosome complex exonuclease Rrp41
1869	 55.96	0	1741584..1742414	+	276	145592135	-	Pars_1938	-	exosome complex RNA-binding protein Rrp42
1870	 52.60	0	1742736..1743062	+	108	145592136	rpl37ae	Pars_1939	-	50S ribosomal protein L37Ae
1871	 51.09	0	1743110..1743661	+	183	145592137	-	Pars_1940	-	Brix
1872	 50.48	0	1743654..1743863	+	69	145592138	-	Pars_1941	-	hypothetical protein
1873	 52.27	0	1743895..1744269	+	124	145592139	-	Pars_1942	-	prefoldin, beta subunit
1874	 49.45	-1	1744271..1744543	+	90	145592140	-	Pars_1943	-	hypothetical protein
1875	 56.12	0	1744528..1745418	+	296	145592141	-	Pars_1944	-	phosphoesterase domain-containing protein
1876	 52.85	0	1745410..1746024	-	204	145592142	-	Pars_1945	-	hypothetical protein
1877	 52.40	0	1746285..1747181	+	298	145592143	-	Pars_1946	-	hypothetical protein
1878	 56.75	0	1747171..1748289	-	372	145592144	-	Pars_1947	-	radical SAM domain-containing protein
1879	 54.60	0	1748334..1748963	+	209	145592145	-	Pars_1948	-	Mn2+-dependent serine/threonine protein kinase
1880	 49.31	-1	1748960..1749391	-	143	145592146	-	Pars_1949	-	like-Sm ribonucleoprotein, core
1881	 51.80	0	1749962..1751158	-	398	145592147	-	Pars_1950	-	helicase c2
1882	 47.20	-1	1751173..1751511	-	112	145592148	-	Pars_1951	-	hypothetical protein
1883	 57.22	0	1751525..1752265	-	246	145592149	-	Pars_1952	-	stationary-phase survival protein SurE
1884	 54.86	0	1752297..1753067	-	256	145592150	-	Pars_1953	-	hypothetical protein
1885	 53.83	0	1753108..1753473	+	121	145592151	-	Pars_1954	-	NADH dehydrogenase subunit A
1886	 57.18	0	1753502..1755061	-	519	145592152	-	Pars_1955	-	CTP synthetase
1887	 47.41	-1	1755961..1756365	-	134	145592153	-	Pars_1956	-	hypothetical protein
1888	 57.75	0	1756409..1757137	+	242	145592154	-	Pars_1957	-	hypothetical protein
1889	 60.63	+1	1757116..1757463	-	115	145592155	-	Pars_1958	-	hypothetical protein
1890	 57.90	0	1757509..1758318	-	269	145592156	-	Pars_1959	-	NAD-dependent deacetylase
1891	 56.33	0	1758371..1760044	+	557	145592157	-	Pars_1960	-	peptidase S16, lon domain-containing protein
1892	 54.67	0	1760034..1760333	-	99	145592158	-	Pars_1961	-	hypothetical protein
1893	 51.69	0	1760471..1761004	+	177	145592159	-	Pars_1962	-	hypothetical protein
1894	 54.37	0	1761052..1761807	+	251	145592160	-	Pars_1963	-	resolvase domain-containing protein
1895	 54.33	0	1762146..1762688	-	180	145592161	-	Pars_1964	-	phosphoribosyltransferase
1896	 53.68	0	1762790..1763482	+	230	145592162	-	Pars_1965	-	SPP-like hydrolase
1897	 50.95	0	1763435..1764280	-	281	145592163	-	Pars_1966	-	hypothetical protein
1898	 44.03	-2	1764277..1764762	-	161	145592164	-	Pars_1967	-	Miro domain-containing protein
1899	 44.44	-1	1764772..1765095	-	107	145592165	-	Pars_1968	-	hypothetical protein
1900	 49.69	-1	1765092..1766051	-	319	145592166	-	Pars_1969	-	glycosyl transferase family protein
1901	 55.06	0	1766053..1766931	-	292	145592167	-	Pars_1970	-	putative deoxyhypusine synthase
1902	 55.00	0	1766928..1767587	-	219	145592168	-	Pars_1971	-	hypothetical protein
1903	 53.98	0	1767695..1768159	+	154	145592169	rps15p	Pars_1972	-	30S ribosomal protein S15P
1904	 51.89	0	1768189..1769244	+	351	145592170	-	Pars_1973	-	hypothetical protein
1905	 44.44	-1	1769231..1769482	+	83	145592171	-	Pars_1974	-	hypothetical protein
1906	 51.73	0	1769457..1769918	-	153	145592172	-	Pars_1975	-	hypothetical protein
1907	 54.39	0	1770456..1771457	+	333	145592173	tfb	Pars_1976	-	transcription initiation factor IIB
1908	 45.83	-1	1771477..1771788	+	103	145592174	-	Pars_1977	-	hypothetical protein
1909	 39.53	-2	1771785..1772123	+	112	145592175	-	Pars_1978	-	hypothetical protein
1910	 46.79	-1	1772124..1772435	-	103	145592176	-	Pars_1979	-	hypothetical protein
1911	 53.88	0	1772510..1772986	+	158	145592177	-	Pars_1980	-	ribosomal protein L13
1912	 47.48	-1	1772987..1773700	-	237	145592178	-	Pars_1981	-	helix-turn-helix domain-containing protein
1913	 44.34	-1	1773808..1774797	+	329	145592179	-	Pars_1982	-	hypothetical protein
1914	 46.53	-1	1774797..1775789	+	330	145592180	-	Pars_1983	-	hypothetical protein
1915	 50.58	0	1775790..1776473	+	227	145592181	-	Pars_1984	-	putative RNA methylase
1916	 49.31	-1	1776470..1776901	-	143	145592182	-	Pars_1985	-	hypothetical protein
1917	 50.29	0	1776898..1777410	-	170	145592183	-	Pars_1986	-	adenylate kinase, conjectural
1918	 56.77	0	1777429..1778499	-	356	145592184	-	Pars_1987	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1919	 50.80	0	1778496..1779245	-	249	145592185	-	Pars_1988	-	helix-turn-helix domain-containing protein
1920	 49.71	-1	1779375..1779899	+	174	145592186	-	Pars_1989	-	PUA domain-containing protein
1921	 52.89	0	1779950..1780624	-	224	145592187	-	Pars_1990	-	putative serine/threonine protein kinase
1922	 55.01	0	1780673..1781041	+	122	145592188	-	Pars_1991	-	hypothetical protein
1923	 57.90	0	1781473..1782636	+	387	145592189	-	Pars_1992	-	glycosyl transferase family protein
1924	 58.82	0	1783080..1786022	-	980	145592190	-	Pars_1993	-	isoleucyl-tRNA synthetase
1925	 45.48	-1	1786530..1786883	-	117	145592191	-	Pars_1994	-	hypothetical protein
1926	 44.84	-1	1786932..1787600	-	222	145592192	-	Pars_1995	-	hypothetical protein
1927	 51.43	0	1787604..1788023	-	139	145592193	-	Pars_1996	-	hypothetical protein
1928	 44.51	-1	1788082..1788582	-	166	145592194	-	Pars_1997	-	hypothetical protein
1929	 55.33	0	1788564..1790336	-	590	145592195	-	Pars_1998	-	hypothetical protein
1930	 56.11	0	1790406..1791182	+	258	145592196	-	Pars_1999	-	hypothetical protein
1931	 55.24	0	1791247..1792191	-	314	145592197	-	Pars_2000	-	thioesterase superfamily protein
1932	 60.21	0	1792235..1793008	+	257	145592198	-	Pars_2001	-	hypothetical protein
1933	 62.14	+1	1792988..1793761	-	257	145592199	-	Pars_2002	-	hypothetical protein
1934	 60.14	0	1793754..1794596	-	280	145592200	-	Pars_2003	-	2-dehydropantoate 2-reductase
1935	 61.64	+1	1794631..1795425	+	264	145592201	panB	Pars_2004	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1936	 52.72	0	1795418..1796851	+	477	145592202	-	Pars_2005	-	hypothetical protein
1937	 56.47	0	1797541..1798158	-	205	145592203	rpl18p	Pars_2006	-	50S ribosomal protein L18P
1938	 55.41	0	1798160..1798603	-	147	145592204	rpl19e	Pars_2007	-	50S ribosomal protein L19e
1939	 56.54	0	1798606..1799079	-	157	145592205	rpl32e	Pars_2008	-	50S ribosomal protein L32e
1940	 49.87	0	1799110..1799502	-	130	145592206	rps8p	Pars_2009	-	30S ribosomal protein S8P
1941	 47.88	-1	1799804..1799968	-	54	145592207	rps14P	Pars_2010	-	30S ribosomal protein S14P
1942	 52.41	0	1800001..1800849	-	282	145592208	-	Pars_2011	-	extracellular solute-binding protein
1943	 59.47	0	1800886..1801983	+	365	145592209	-	Pars_2012	-	FAD dependent oxidoreductase
1944	 54.55	0	1801980..1802771	+	263	145592210	-	Pars_2013	-	GCN5-related N-acetyltransferase
1945	 60.95	+1	1802772..1803278	-	168	145592211	-	Pars_2014	-	hypothetical protein
1946	 59.97	0	1803303..1804034	+	243	145592212	-	Pars_2015	-	short-chain dehydrogenase/reductase SDR
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.