IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
135	 51.27	0	124765..125394	-	209	145590402	-	Pars_0137	-	hypothetical protein
136	 52.80	0	126196..127140	-	314	145590403	-	Pars_0138	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
137	 48.95	-1	127137..129038	-	633	145590404	-	Pars_0139	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
138	 44.95	-1	129211..129804	-	197	145590405	-	Pars_0140	-	multiple antibiotic resistance (MarC)-related protein
139	 52.74	0	129917..131137	-	406	145590406	-	Pars_0141	-	hypothetical protein
140	 43.79	-2	131162..131620	+	152	145590407	-	Pars_0142	-	GCN5-related N-acetyltransferase
141	 58.17	0	131745..132827	+	360	145590408	-	Pars_0143	-	carbamoyl phosphate synthase small subunit
142	 59.81	0	132820..135897	+	1025	145590409	carB	Pars_0144	-	carbamoyl phosphate synthase large subunit
143	 59.12	0	135891..136685	+	264	145590410	-	Pars_0145	-	alpha-L-glutamate ligase
144	 62.60	+1	136772..137779	-	335	145590411	-	Pars_0146	-	AIR synthase-like protein
145	 58.33	0	137807..138694	+	295	145590412	-	Pars_0147	-	GntR family transcriptional regulator
146	 58.73	0	138708..139274	+	188	145590413	-	Pars_0148	-	hypothetical protein
147	 55.99	0	139264..140406	+	380	145590414	-	Pars_0149	-	extracellular solute-binding protein
148	 50.31	0	140396..140878	-	160	145590415	-	Pars_0150	-	magnesium-dependent phosphatase-1
149	 53.44	0	140914..141291	+	125	145590416	-	Pars_0151	-	hypothetical protein
150	 58.14	0	141313..141828	+	171	145590417	-	Pars_0152	-	molybdenum cofactor synthesis domain-containing protein
151	 60.26	0	141825..142355	+	176	145590418	-	Pars_0153	-	hypothetical protein
152	 61.42	+1	142339..142929	-	196	145590419	-	Pars_0154	-	abortive infection protein
153	 51.52	0	142975..143469	+	164	145590420	-	Pars_0155	-	hypothetical protein
154	 55.67	0	143450..144040	-	196	145590421	-	Pars_0156	-	dTMP kinase
155	 59.72	0	144088..144663	+	191	145590422	hisH	Pars_0157	-	imidazole glycerol phosphate synthase subunit HisH
156	 62.47	+1	144632..145060	-	142	145590423	-	Pars_0158	-	phosphoribosyl-AMP cyclohydrolase
157	 60.95	+1	145119..146132	+	337	145590424	-	Pars_0159	-	aminotransferase, class I and II
158	 59.89	0	146136..147020	+	294	145590425	hisG	Pars_0160	-	ATP phosphoribosyltransferase
159	 60.20	0	147036..148256	+	406	145590426	-	Pars_0161	-	adenylosuccinate lyase
160	 62.49	+1	148285..149289	+	334	145590427	-	Pars_0162	-	adenylosuccinate synthetase
161	 57.96	0	149315..149785	+	156	145590428	-	Pars_0163	-	PaREP1 domain-containing protein
162	 60.14	0	149884..151323	+	479	145590429	-	Pars_0164	-	FAD dependent oxidoreductase
163	 54.92	0	151422..152102	+	226	145590430	-	Pars_0165	-	hypothetical protein
164	 63.86	+1	152188..152472	-	94	145590431	-	Pars_0166	-	phosphoribosyl-ATP pyrophosphohydrolase
165	 66.13	+2	152469..153578	-	369	145590432	-	Pars_0167	-	histidinol dehydrogenase
166	 64.15	+1	153575..154330	-	251	145590433	-	Pars_0168	-	imidazoleglycerol phosphate synthase, cyclase subunit
167	 55.94	0	154381..154809	+	142	145590434	-	Pars_0169	-	hypothetical protein
168	 65.23	+1	154858..155415	+	185	145590435	-	Pars_0170	-	imidazoleglycerol-phosphate dehydratase
169	 62.15	+1	155412..156098	+	228	145590436	-	Pars_0171	-	histidine biosynthesis
170	 58.45	0	156272..157768	+	498	145590437	-	Pars_0172	-	hypothetical protein
171	 48.82	-1	157775..158155	-	126	145590438	-	Pars_0173	-	hypothetical protein
172	 55.05	0	158218..158949	+	243	145590439	-	Pars_0174	-	hypothetical protein
173	 48.00	-1	159150..159374	+	74	145590440	-	Pars_0175	-	hypothetical protein
174	 58.05	0	159357..160703	-	448	145590441	-	Pars_0176	-	4-aminobutyrate aminotransferase
175	 55.86	0	160878..161636	-	252	145590442	-	Pars_0177	-	FeS assembly ATPase SufC
176	 56.82	0	161771..162034	+	87	145590443	-	Pars_0178	-	hypothetical protein
177	 52.58	0	162057..162617	+	186	145590444	-	Pars_0179	-	hypothetical protein
178	 61.04	+1	162660..163388	-	242	145590445	-	Pars_0180	-	aspartate/glutamate/uridylate kinase
179	 57.01	0	163388..164392	-	334	145590446	-	Pars_0181	-	polyprenyl synthetase
180	 60.86	+1	164433..165173	+	246	145590447	-	Pars_0182	-	hypothetical protein
181	 53.13	0	165296..165694	+	132	145590448	-	Pars_0183	-	hypothetical protein
182	 56.16	0	165792..166124	+	110	145590449	-	Pars_0184	-	hypothetical protein
183	 60.94	+1	166127..166981	+	284	145590450	-	Pars_0185	-	thiamine monophosphate kinase-like protein
184	 56.72	0	167014..167727	+	237	145590451	-	Pars_0186	-	hypothetical protein
185	 58.48	0	167724..168395	-	223	145590452	-	Pars_0187	-	ribose 5-phosphate isomerase
186	 53.75	0	168429..168815	-	128	145590453	-	Pars_0188	-	signal-transduction protein
187	 58.73	0	168912..170762	+	616	145590454	-	Pars_0189	-	aldehyde ferredoxin oxidoreductase-like protein
188	 46.80	-1	171080..171658	+	192	145590455	-	Pars_0190	-	hypothetical protein
189	 51.14	0	171655..172446	+	263	145590456	-	Pars_0191	-	hypothetical protein
190	 59.15	0	172449..172847	-	132	145590457	-	Pars_0192	-	dinitrogenase iron-molybdenum cofactor biosynthesis
191	 54.73	0	172906..173433	+	175	145590458	-	Pars_0193	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
192	 57.28	0	173430..173738	+	102	145590459	-	Pars_0194	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
193	 59.48	0	173735..174916	+	393	145590460	-	Pars_0195	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
194	 59.26	0	174913..175857	+	314	145590461	-	Pars_0196	-	thiamine pyrophosphate binding domain-containing protein
195	 58.09	0	175951..177828	+	625	145590462	-	Pars_0197	-	hypothetical protein
196	 53.21	0	177871..178182	+	103	145590463	-	Pars_0198	-	hypothetical protein
197	 57.75	0	178344..179801	+	485	145590464	-	Pars_0199	-	glycoside hydrolase family protein
198	 58.62	0	179822..181039	+	405	145590465	-	Pars_0200	-	major facilitator transporter
199	 57.73	0	181066..181770	+	234	145590466	-	Pars_0201	-	hypothetical protein
200	 61.76	+1	181765..182640	-	291	145590467	-	Pars_0202	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
201	 63.66	+1	182827..184023	+	398	145590468	-	Pars_0203	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
202	 58.44	0	183997..184689	-	230	145590469	-	Pars_0204	-	hypothetical protein
203	 54.40	0	184775..185206	+	143	145590470	-	Pars_0205	-	hypothetical protein
204	 60.72	+1	185245..186657	+	470	145590471	-	Pars_0206	-	4-alpha-glucanotransferase
205	 56.06	0	187527..188648	+	373	145590472	-	Pars_0207	-	uncharacterized linocin/CFP29-like protein
206	 53.57	0	189162..189497	+	111	145590473	-	Pars_0208	-	hypothetical protein
207	 59.83	0	189712..189945	-	77	145590474	-	Pars_0209	-	hypothetical protein
208	 53.15	0	189935..190267	-	110	145590475	-	Pars_0210	-	hypothetical protein
209	 58.94	0	190298..191203	-	301	145590476	-	Pars_0211	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
210	 63.36	+1	191229..192317	-	362	145590477	-	Pars_0212	-	hypothetical protein
211	 58.86	0	192405..193544	+	379	145590478	-	Pars_0213	-	putative ABC-2 type transport system permease protein
212	 58.72	0	193541..194245	+	234	145590479	-	Pars_0214	-	ABC transporter related
213	 61.81	+1	194210..194950	-	246	145590480	-	Pars_0215	-	hypothetical protein
214	 61.08	+1	195086..195640	-	184	145590481	-	Pars_0216	-	methyltransferase type 11
215	 60.36	0	195643..196704	-	353	145590482	-	Pars_0217	-	radical SAM domain-containing protein
216	 56.16	0	197374..197706	-	110	145590483	-	Pars_0218	-	DNA polymerase beta subunit
217	 54.69	0	197687..198070	-	127	145590484	-	Pars_0219	-	HEPN domain-containing protein
218	 61.06	+1	198698..199750	+	350	145590485	-	Pars_0220	-	radical SAM domain-containing protein
219	 55.26	0	199741..200073	-	110	145590486	-	Pars_0221	-	FHA domain-containing protein
220	 55.65	0	200133..200477	+	114	145590487	-	Pars_0222	-	MazG nucleotide pyrophosphohydrolase
221	 55.45	0	200557..200859	-	100	145590488	-	Pars_0223	-	hypothetical protein
222	 54.35	0	200930..202594	+	554	145590489	-	Pars_0224	-	hypothetical protein
223	 54.23	0	202609..203364	+	251	145590490	-	Pars_0225	-	hypothetical protein
224	 60.45	0	203392..204195	+	267	145590491	-	Pars_0226	-	putative circadian clock protein, KaiC
225	 62.44	+1	204524..205138	-	204	145590492	-	Pars_0227	-	glutamine amidotransferase subunit PdxT
226	 62.82	+1	205135..206148	-	337	145590493	-	Pars_0228	-	pyridoxine biosynthesis protein
227	 56.29	0	206241..207242	-	333	145590494	-	Pars_0229	-	hypothetical protein
228	 63.99	+1	207221..207967	-	248	145590495	-	Pars_0230	-	diphthine synthase
229	 58.96	0	208021..208500	+	159	145590496	-	Pars_0231	-	hypothetical protein
230	 53.15	0	208501..209151	-	216	145590497	-	Pars_0232	-	hypothetical protein
231	 62.14	+1	209181..209954	-	257	145590498	-	Pars_0233	-	pseudouridylate synthase
232	 62.17	+1	209981..210670	+	229	145590499	-	Pars_0234	-	GCN5-related N-acetyltransferase
233	 55.56	0	210693..210971	+	92	145590500	-	Pars_0235	-	hypothetical protein
234	 61.40	+1	210972..211826	-	284	145590501	-	Pars_0236	-	6-phosphogluconate dehydrogenase, NAD-binding
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.