IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1781	 49.43	-1	1651538..1652506	+	322	145592047	rfc	Pars_1846	-	replication factor C small subunit
1782	 44.07	-2	1652674..1652943	-	89	145592048	-	Pars_1847	-	DNA-directed RNA polymerase, M/15 kDa subunit
1783	 52.45	0	1652989..1654803	+	604	145592049	-	Pars_1848	-	thiamine pyrophosphate binding domain-containing protein
1784	 55.62	0	1654776..1655318	+	180	145592050	-	Pars_1849	-	indolepyruvate oxidoreductase subunit B
1785	 49.81	0	1655307..1656113	-	268	145592051	-	Pars_1850	-	protein of unknown function RIO1
1786	 47.75	-1	1656128..1656682	+	184	145592052	-	Pars_1851	-	putative RNA-processing protein
1787	 48.87	-1	1656871..1657533	-	220	145592053	-	Pars_1852	-	30S ribosomal protein S3Ae
1788	 49.11	-1	1657629..1658135	+	168	145592054	-	Pars_1853	-	AsnC family transcriptional regulator
1789	 47.00	-1	1658170..1658469	+	99	145592055	-	Pars_1854	-	hypothetical protein
1790	 46.51	-1	1658500..1658757	+	85	145592056	-	Pars_1855	-	AsnC family transcriptional regulator
1791	 55.20	0	1658757..1659419	+	220	145592057	-	Pars_1856	-	hypothetical protein
1792	 55.69	0	1659408..1660409	-	333	145592058	-	Pars_1857	-	hypothetical protein
1793	 57.45	0	1660457..1661704	+	415	145592059	-	Pars_1858	-	molybdenum cofactor synthesis domain-containing protein
1794	 56.04	0	1661857..1663776	-	639	145592060	-	Pars_1859	-	molybdenum cofactor synthesis domain-containing protein
1795	 43.14	-2	1663787..1664092	-	101	145592061	-	Pars_1860	-	hypothetical protein
1796	 54.25	0	1664300..1665346	+	348	145592062	-	Pars_1861	-	peptidase M48, Ste24p
1797	 57.18	0	1665367..1665798	+	143	145592063	-	Pars_1862	-	hypothetical protein
1798	 53.04	0	1665823..1666629	-	268	145592064	-	Pars_1863	-	binding-protein-dependent transport systems inner membrane component
1799	 52.49	0	1666619..1667542	-	307	145592065	-	Pars_1864	-	binding-protein-dependent transport systems inner membrane component
1800	 52.97	0	1667542..1668906	-	454	145592066	-	Pars_1865	-	extracellular solute-binding protein
1801	 54.25	0	1668938..1671940	-	1000	145592067	-	Pars_1866	-	glycoside hydrolase family protein
1802	 52.49	0	1671988..1672791	+	267	145592068	-	Pars_1867	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1803	 45.24	-1	1672866..1673075	+	69	145592069	-	Pars_1868	-	hypothetical protein
1804	 53.04	0	1673213..1673557	-	114	145592070	-	Pars_1869	-	HEPN domain-containing protein
1805	 57.18	0	1673557..1674726	-	389	145592071	-	Pars_1870	-	Serine--glyoxylate transaminase
1806	 49.96	0	1674845..1676131	-	428	145592072	-	Pars_1871	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
1807	 55.33	0	1676234..1677124	+	296	145592073	-	Pars_1872	-	ROK family protein
1808	 53.21	0	1677160..1677627	+	155	145592074	rpl15p	Pars_1873	-	50S ribosomal protein L15P
1809	 49.86	0	1677627..1679024	+	465	145592075	-	Pars_1874	-	preprotein translocase subunit SecY
1810	 39.01	-2	1679061..1679201	+	46	145592076	-	Pars_1875	-	hypothetical protein
1811	 52.26	0	1679202..1679999	+	265	145592077	-	Pars_1876	-	hypothetical protein
1812	 51.14	0	1679996..1681219	-	407	145592078	-	Pars_1877	-	nucleotidyl transferase
1813	 58.87	0	1681267..1682715	-	482	145592079	-	Pars_1878	-	starch synthase
1814	 58.28	0	1682717..1684087	-	456	145592080	-	Pars_1879	-	Alpha-amylase
1815	 57.96	0	1684175..1686001	+	608	145592081	-	Pars_1880	-	aldehyde ferredoxin oxidoreductase
1816	 57.11	0	1686028..1687482	+	484	145592082	-	Pars_1881	-	glycosyl transferase, group 1
1817	 57.75	0	1687623..1689047	+	474	145592083	-	Pars_1882	-	thiamine biosynthesis protein ThiI
1818	 54.47	0	1689242..1690225	-	327	145592084	-	Pars_1883	-	putative mRNA 3-end processing factor
1819	 57.05	0	1690356..1692716	-	786	145592085	-	Pars_1884	-	DNA polymerase II
1820	 52.99	0	1692860..1693210	+	116	145592086	-	Pars_1885	-	hypothetical protein
1821	 51.23	0	1693685..1694902	-	405	145592087	-	Pars_1886	-	DNA primase
1822	 56.35	0	1695530..1696120	+	196	145592088	-	Pars_1887	-	HAD family hydrolase
1823	 60.57	+1	1696686..1697522	+	278	145592089	-	Pars_1888	-	abortive infection protein
1824	 56.10	0	1697490..1698227	-	245	145592090	-	Pars_1889	-	hypothetical protein
1825	 51.13	0	1698266..1698619	+	117	145592091	-	Pars_1890	-	hypothetical protein
1826	 51.24	0	1698650..1698850	+	66	145592092	-	Pars_1891	-	hypothetical protein
1827	 59.05	0	1698847..1699752	-	301	145592093	-	Pars_1892	-	peptidase T2, asparaginase 2
1828	 53.54	0	1699749..1700228	-	159	145592094	rps4p	Pars_1893	-	30S ribosomal protein S4
1829	 54.03	0	1700260..1700718	-	152	145592095	rps13p	Pars_1894	-	30S ribosomal protein S13P
1830	 49.22	-1	1700747..1702162	-	471	145592096	-	Pars_1895	-	binding-protein-dependent transport systems inner membrane component
1831	 49.49	-1	1702159..1703229	-	356	145592097	-	Pars_1896	-	binding-protein-dependent transport systems inner membrane component
1832	 54.42	0	1703282..1705918	-	878	145592098	-	Pars_1897	-	cell wall anchor domain-containing protein
1833	 37.75	-2	1705934..1706182	-	82	145592099	-	Pars_1898	-	hypothetical protein
1834	 53.20	0	1706160..1707332	-	390	145592100	-	Pars_1899	-	pullulanase
1835	 40.78	-2	1707547..1707855	-	102	145592101	-	Pars_1900	-	hypothetical protein
1836	 56.08	0	1707881..1708777	-	298	145592102	-	Pars_1901	-	radical SAM domain-containing protein
1837	 52.66	0	1708819..1709382	+	187	145592103	-	Pars_1902	-	hypothetical protein
1838	 55.76	0	1709341..1709835	-	164	145592104	-	Pars_1903	-	NUDIX hydrolase
1839	 52.84	0	1709832..1711010	-	392	145592105	-	Pars_1904	-	aminotransferase, class I and II
1840	 46.85	-1	1711231..1711977	-	248	145592106	-	Pars_1905	-	hypothetical protein
1841	 47.37	-1	1711978..1712490	-	170	145592107	-	Pars_1906	-	hypothetical protein
1842	 50.79	0	1712480..1715338	-	952	145592108	-	Pars_1907	-	hypothetical protein
1843	 46.15	-1	1717885..1718391	+	168	145592109	-	Pars_1912	-	hypothetical protein
1844	 53.13	0	1718414..1719196	+	260	145592110	-	Pars_1913	-	metallophosphoesterase
1845	 52.33	0	1719320..1720609	-	429	145592111	-	Pars_1914	-	hypothetical protein
1846	 54.32	0	1720696..1721610	+	304	145592112	-	Pars_1915	-	ATPase
1847	 53.54	0	1721603..1722676	+	357	145592113	-	Pars_1916	-	VWA containing CoxE family protein
1848	 55.33	0	1722707..1723756	+	349	145592114	-	Pars_1917	-	DNA primase large subunit
1849	 56.11	0	1723722..1724498	+	258	145592115	-	Pars_1918	-	N-glycosylase/DNA lyase
1850	 59.54	0	1724723..1725073	-	116	145592116	-	Pars_1919	-	hypothetical protein
1851	 55.53	0	1725066..1726187	-	373	145592117	-	Pars_1920	-	hypothetical protein
1852	 57.36	0	1726271..1727548	-	425	145592118	-	Pars_1921	-	UbiD family decarboxylase
1853	 52.60	0	1727581..1727907	-	108	145592119	-	Pars_1922	-	chromatin protein
1854	 51.13	0	1727924..1730215	-	763	145592120	-	Pars_1923	-	hypothetical protein
1855	 54.40	0	1730280..1731086	+	268	145592121	-	Pars_1924	-	regulatory protein, ArsR
1856	 53.61	0	1731086..1731583	+	165	145592122	-	Pars_1925	-	hypothetical protein
1857	 52.06	0	1731573..1732565	-	330	145592123	-	Pars_1926	-	phosphate uptake regulator, PhoU
1858	 53.80	0	1732775..1733878	-	367	145592124	-	Pars_1927	-	DNA topoisomerase VI subunit A
1859	 54.76	0	1733971..1735557	-	528	145592125	-	Pars_1928	-	DNA topoisomerase VI subunit B
1860	 55.46	0	1735661..1736392	+	243	145592126	-	Pars_1929	-	proteasome subunit alpha
1861	 50.59	0	1736389..1736643	-	84	145592127	-	Pars_1930	-	hypothetical protein
1862	 50.60	0	1736689..1737105	+	138	145592128	-	Pars_1931	-	hypothetical protein
1863	 49.33	-1	1737120..1737344	+	74	145592129	-	Pars_1932	-	hypothetical protein
1864	 51.08	0	1737360..1738283	-	307	145592130	-	Pars_1933	-	hypothetical protein
1865	 51.72	0	1738323..1739192	+	289	145592131	-	Pars_1934	-	hypothetical protein
1866	 49.50	-1	1739247..1739945	+	232	145592132	-	Pars_1935	-	putative RNA-associated protein
1867	 52.36	0	1739948..1740646	+	232	145592133	-	Pars_1936	-	exosome complex RNA-binding protein Rrp4
1868	 54.12	0	1740842..1741582	+	246	145592134	-	Pars_1937	-	exosome complex exonuclease Rrp41
1869	 55.96	0	1741584..1742414	+	276	145592135	-	Pars_1938	-	exosome complex RNA-binding protein Rrp42
1870	 52.60	0	1742736..1743062	+	108	145592136	rpl37ae	Pars_1939	-	50S ribosomal protein L37Ae
1871	 51.09	0	1743110..1743661	+	183	145592137	-	Pars_1940	-	Brix
1872	 50.48	0	1743654..1743863	+	69	145592138	-	Pars_1941	-	hypothetical protein
1873	 52.27	0	1743895..1744269	+	124	145592139	-	Pars_1942	-	prefoldin, beta subunit
1874	 49.45	-1	1744271..1744543	+	90	145592140	-	Pars_1943	-	hypothetical protein
1875	 56.12	0	1744528..1745418	+	296	145592141	-	Pars_1944	-	phosphoesterase domain-containing protein
1876	 52.85	0	1745410..1746024	-	204	145592142	-	Pars_1945	-	hypothetical protein
1877	 52.40	0	1746285..1747181	+	298	145592143	-	Pars_1946	-	hypothetical protein
1878	 56.75	0	1747171..1748289	-	372	145592144	-	Pars_1947	-	radical SAM domain-containing protein
1879	 54.60	0	1748334..1748963	+	209	145592145	-	Pars_1948	-	Mn2+-dependent serine/threonine protein kinase
1880	 49.31	-1	1748960..1749391	-	143	145592146	-	Pars_1949	-	like-Sm ribonucleoprotein, core
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.