IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1535	 53.18	0	1445393..1446178	-	261	145591801	-	Pars_1597	-	uridine phosphorylase
1536	 48.10	-1	1446193..1446429	-	78	145591802	-	Pars_1598	-	hypothetical protein
1537	 52.85	0	1446426..1447373	-	315	145591803	-	Pars_1599	-	mevalonate kinase
1538	 51.50	0	1447405..1448439	-	344	145591804	rplP0	Pars_1600	-	acidic ribosomal protein P0
1539	 48.28	-1	1448482..1449150	-	222	145591805	rpl1P	Pars_1601	-	50S ribosomal protein L1P
1540	 45.38	-1	1449152..1449649	-	165	145591806	-	Pars_1602	-	ribosomal protein L11
1541	 51.52	0	1449683..1450144	-	153	145591807	nusG	Pars_1603	-	transcription antitermination protein NusG
1542	 51.67	0	1450144..1450443	-	99	145591808	-	Pars_1604	-	hypothetical protein
1543	 50.65	0	1450473..1451390	-	305	145591809	-	Pars_1605	-	signal recognition particle-docking protein FtsY
1544	 52.07	0	1451391..1451801	-	136	145591810	-	Pars_1606	-	prefoldin subunit alpha
1545	 44.30	-2	1451803..1452039	-	78	145591811	-	Pars_1607	-	ribosomal LX protein
1546	 49.77	0	1452070..1452732	-	220	145591812	-	Pars_1608	-	translation initiation factor IF-6
1547	 49.10	-1	1452725..1453003	-	92	145591813	-	Pars_1609	-	ribosomal protein L31e
1548	 57.91	0	1453200..1453964	+	254	145591814	-	Pars_1610	-	radical SAM domain-containing protein
1549	 57.30	0	1453961..1454707	+	248	145591815	-	Pars_1611	-	HhH-GPD family protein
1550	 55.56	0	1454735..1455859	+	374	145591816	-	Pars_1612	-	tryptophanyl-tRNA synthetase
1551	 54.58	0	1455852..1456091	-	79	145591817	-	Pars_1613	-	deoxyribonuclease
1552	 49.26	-1	1456247..1456585	-	112	145591818	-	Pars_1614	-	PilT domain-containing protein
1553	 55.08	0	1456582..1457625	-	347	145591819	-	Pars_1615	-	hypothetical protein
1554	 56.57	0	1457725..1457922	+	65	145591820	-	Pars_1616	-	hypothetical protein
1555	 51.08	0	1457990..1458451	-	153	145591821	-	Pars_1617	-	histidine triad (HIT) protein
1556	 50.00	0	1458472..1458681	-	69	145591822	-	Pars_1618	-	hypothetical protein
1557	 56.57	0	1458906..1459598	+	230	145591823	-	Pars_1619	-	hypothetical protein
1558	 56.69	0	1459607..1460689	+	360	145591824	-	Pars_1620	-	nucleotidyl transferase
1559	 57.16	0	1460681..1461406	-	241	145591825	-	Pars_1621	-	photosystem I assembly BtpA
1560	 53.03	0	1461511..1462038	+	175	145591826	-	Pars_1622	-	hypothetical protein
1561	 50.40	0	1462268..1462642	-	124	145591827	-	Pars_1623	-	hypothetical protein
1562	 52.03	0	1462626..1463513	-	295	145591828	-	Pars_1624	-	peptidase M48, Ste24p
1563	 47.97	-1	1463543..1463911	-	122	145591829	-	Pars_1625	-	hypothetical protein
1564	 52.27	0	1464102..1465004	-	300	145591830	-	Pars_1626	-	hypothetical protein
1565	 55.03	0	1465125..1466009	-	294	145591831	-	Pars_1627	-	hypothetical protein
1566	 57.17	0	1467902..1468396	+	164	145591832	-	Pars_1629	-	PaREP1 domain-containing protein
1567	 67.18	+2	1469064..1469648	-	194	145591833	-	Pars_1630	-	hypothetical protein
1568	 51.98	0	1470071..1470322	+	83	145591834	-	Pars_1631	-	hypothetical protein
1569	 41.46	-2	1470357..1471685	+	442	145591835	-	Pars_1632	-	hypothetical protein
1570	 46.78	-1	1472131..1473960	-	609	145591836	-	Pars_1633	-	hypothetical protein
1571	 46.96	-1	1474163..1476532	+	789	145591837	-	Pars_1634	-	hypothetical protein
1572	 43.77	-2	1477036..1477428	-	130	145591838	-	Pars_1635	-	hypothetical protein
1573	 45.90	-1	1477635..1478549	+	304	145591839	-	Pars_1636	-	hypothetical protein
1574	 47.74	-1	1478546..1479142	+	198	145591840	-	Pars_1637	-	hypothetical protein
1575	 61.05	+1	1479319..1479603	+	94	145591841	-	Pars_1638	-	hypothetical protein
1576	 63.94	+1	1480006..1480701	+	231	145591842	-	Pars_1639	-	metallophosphoesterase
1577	 58.77	0	1480744..1480971	+	75	145591843	-	Pars_1640	-	AbrB family transcriptional regulator
1578	 62.93	+1	1480946..1481320	+	124	145591844	-	Pars_1641	-	PilT domain-containing protein
1579	 57.36	0	1481713..1481970	-	85	145591845	-	Pars_1642	-	paREP7
1580	 61.74	+1	1482688..1483701	-	337	145591846	-	Pars_1643	-	peptidase M48, Ste24p
1581	 45.98	-1	1483779..1483952	+	57	145591847	-	Pars_1644	-	paREP4
1582	 59.97	0	1484044..1484715	+	223	145591848	-	Pars_1645	-	hypothetical protein
1583	 55.60	0	1484672..1485439	-	255	145591849	-	Pars_1646	-	hypothetical protein
1584	 50.23	0	1485439..1486095	-	218	145591850	-	Pars_1647	-	hypothetical protein
1585	 59.34	0	1486127..1487218	-	363	145591851	-	Pars_1648	-	radical SAM domain-containing protein
1586	 59.04	0	1487522..1488019	-	165	145591852	-	Pars_1649	-	transcription factor TFIIB, cyclin-related
1587	 58.73	0	1488016..1488330	-	104	145591853	-	Pars_1650	-	hypothetical protein
1588	 57.89	0	1488410..1491814	+	1134	145591854	-	Pars_1651	-	paREP2b
1589	 56.15	0	1491817..1492320	+	167	145591855	-	Pars_1652	-	hypothetical protein
1590	 49.24	-1	1492347..1492610	-	87	145591856	-	Pars_1653	-	hypothetical protein
1591	 58.03	0	1492610..1493026	-	138	145591857	rps11p	Pars_1654	-	30S ribosomal protein S11P
1592	 58.15	0	1493052..1494131	-	359	145591858	-	Pars_1655	-	THUMP domain-containing protein
1593	 49.11	-1	1494198..1494647	+	149	145591859	-	Pars_1656	-	hypothetical protein
1594	 50.67	0	1494644..1495168	-	174	145591860	-	Pars_1657	-	heat shock protein Hsp20
1595	 56.55	0	1495200..1497413	-	737	145591861	-	Pars_1658	-	AAA family ATPase, CDC48 subfamily protein
1596	 53.76	0	1497457..1499439	-	660	145591862	-	Pars_1659	-	signal transduction protein
1597	 57.05	0	1500696..1501901	+	401	145591863	-	Pars_1662	-	translation-associated GTPase
1598	 50.96	0	1501894..1502364	-	156	145591864	-	Pars_1663	-	response regulator receiver protein
1599	 52.97	0	1502386..1502823	-	145	145591865	-	Pars_1664	-	histidine triad (HIT) protein
1600	 55.20	0	1502921..1503574	-	217	145591866	pyrH	Pars_1665	-	uridylate kinase
1601	 51.92	0	1503558..1504079	-	173	145591867	-	Pars_1666	-	hypothetical protein
1602	 56.32	0	1504195..1505586	-	463	145591868	-	Pars_1667	-	seryl-tRNA synthetase
1603	 51.11	0	1505576..1505845	-	89	145591869	-	Pars_1668	-	hypothetical protein
1604	 55.00	0	1505876..1506355	-	159	145591870	-	Pars_1669	-	hypothetical protein
1605	 55.95	0	1506392..1510114	-	1240	145591871	-	Pars_1670	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1606	 57.79	0	1510199..1510930	-	243	145591872	-	Pars_1671	-	hypothetical protein
1607	 56.29	0	1511042..1511542	+	166	145591873	-	Pars_1672	-	thiol:disulphide interchange protein, putative
1608	 62.32	+1	1511539..1512021	+	160	145591874	-	Pars_1673	-	hypothetical protein
1609	 55.22	0	1511983..1512576	-	197	145591875	-	Pars_1674	-	hypothetical protein
1610	 55.12	0	1512648..1513955	+	435	145591876	-	Pars_1675	-	hypothetical protein
1611	 59.31	0	1513947..1514612	-	221	145591877	-	Pars_1676	-	B3/4 domain-containing protein
1612	 59.57	0	1514640..1515062	-	140	145591878	-	Pars_1677	-	hypothetical protein
1613	 57.28	0	1515065..1515916	-	283	145591879	-	Pars_1678	-	hypothetical protein
1614	 58.45	0	1515964..1517277	+	437	145591880	-	Pars_1679	-	S-adenosyl-L-homocysteine hydrolase
1615	 57.26	0	1517314..1517685	-	123	145591881	-	Pars_1680	-	hypothetical protein
1616	 52.16	0	1517667..1517990	-	107	145591882	-	Pars_1681	-	hypothetical protein
1617	 57.24	0	1518058..1518492	-	144	145591883	rpl14p	Pars_1682	-	50S ribosomal protein L14P
1618	 55.44	0	1518640..1519476	-	278	145591884	-	Pars_1683	-	hypothetical protein
1619	 62.32	+1	1519476..1520717	-	413	145591885	-	Pars_1684	-	pseudouridylate synthase
1620	 60.85	+1	1521100..1521288	-	62	145591886	-	Pars_1685	-	hypothetical protein
1621	 57.97	0	1521296..1521778	-	160	145591887	-	Pars_1686	-	hypothetical protein
1622	 42.52	-2	1522073..1522453	-	126	145591888	-	Pars_1687	-	hypothetical protein
1623	 49.23	-1	1523009..1523914	+	301	145591889	-	Pars_1688	-	hypothetical protein
1624	 58.48	0	1524665..1525507	+	280	145591890	-	Pars_1689	-	xylose isomerase domain-containing protein
1625	 61.08	+1	1525553..1527397	+	614	145591891	-	Pars_1690	-	hypothetical protein
1626	 56.19	0	1527587..1528168	+	193	145591892	-	Pars_1691	-	hypothetical protein
1627	 63.65	+1	1528140..1529033	-	297	145591893	-	Pars_1692	-	dihydroorotate dehydrogenase
1628	 61.49	+1	1529021..1529599	-	192	145591894	pyrE	Pars_1693	-	orotate phosphoribosyltransferase
1629	 55.70	0	1529596..1530051	-	151	145591895	-	Pars_1694	-	aspartate carbamoyltransferase regulatory subunit
1630	 54.48	0	1530592..1531272	-	226	145591896	-	Pars_1695	-	paREP7
1631	 64.39	+1	1532368..1533201	-	277	145591897	-	Pars_1696	-	abortive infection protein
1632	 56.92	0	1533201..1533641	-	146	145591898	-	Pars_1697	-	hypothetical protein
1633	 54.89	0	1534047..1534496	+	149	145591899	-	Pars_1698	-	hypothetical protein
1634	 59.14	0	1534699..1534884	-	61	145591900	-	Pars_1699	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.