IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1453	 57.06	0	1371169..1372032	-	287	145591719	-	Pars_1513	-	hypothetical protein
1454	 62.53	+1	1372013..1373413	-	466	145591720	-	Pars_1514	-	methyltransferase small
1455	 52.63	0	1373592..1373762	+	56	145591721	-	Pars_1515	-	hypothetical protein
1456	 50.35	0	1377175..1377744	+	189	145591722	-	Pars_1518	-	hypothetical protein
1457	 54.92	0	1377741..1379153	+	470	145591723	-	Pars_1519	-	ATP-dependent protease La
1458	 60.48	0	1379253..1379543	+	96	145591724	-	Pars_1520	-	hypothetical protein
1459	 52.59	0	1380639..1380773	-	44	145591725	-	Pars_1521	-	hypothetical protein
1460	 65.22	+1	1380863..1381138	+	91	145591726	-	Pars_1522	-	hypothetical protein
1461	 62.73	+1	1381135..1383369	-	744	145591727	-	Pars_1523	-	DEAD/DEAH box helicase domain-containing protein
1462	 60.38	0	1383374..1384438	-	354	145591728	-	Pars_1524	-	major facilitator transporter
1463	 55.35	0	1384435..1384929	-	164	145591729	-	Pars_1525	-	hypothetical protein
1464	 47.77	-1	1385120..1385500	+	126	145591730	-	Pars_1526	-	ferric uptake regulator family protein
1465	 61.15	+1	1385591..1386841	+	416	145591731	-	Pars_1527	-	FAD dependent oxidoreductase
1466	 47.62	-1	1386870..1387037	+	55	145591732	-	Pars_1528	-	hypothetical protein
1467	 56.05	0	1387091..1388239	+	382	145591733	-	Pars_1529	-	succinyl-CoA synthetase, beta subunit
1468	 59.41	0	1388236..1389117	+	293	145591734	-	Pars_1530	-	succinyl-CoA synthetase, alpha subunit
1469	 53.17	0	1389117..1389368	+	83	145591735	-	Pars_1531	-	hypothetical protein
1470	 56.17	0	1389421..1390620	+	399	145591736	-	Pars_1532	-	GntR family transcriptional regulator
1471	 56.58	0	1390617..1391825	+	402	145591737	-	Pars_1533	-	threonine dehydratase
1472	 55.79	0	1391851..1392567	+	238	145591738	-	Pars_1534	-	threonyl/alanyl tRNA synthetase, SAD
1473	 52.91	0	1392567..1394093	+	508	145591739	-	Pars_1535	-	sodium/hydrogen exchanger
1474	 53.67	0	1394033..1394386	-	117	145591740	-	Pars_1536	-	hypothetical protein
1475	 52.90	0	1394457..1395422	+	321	145591741	-	Pars_1537	-	hypothetical protein
1476	 53.45	0	1395409..1396233	-	274	145591742	-	Pars_1538	-	metal dependent phosphohydrolase
1477	 54.17	0	1396288..1396599	+	103	145591743	-	Pars_1539	-	CutA1 divalent ion tolerance protein
1478	 58.17	0	1396592..1397827	+	411	145591744	-	Pars_1540	-	cofactor-independent phosphoglycerate mutase
1479	 46.88	-1	1397824..1398111	+	95	145591745	-	Pars_1541	-	hypothetical protein
1480	 59.24	0	1398067..1398672	-	201	145591746	-	Pars_1542	-	hypothetical protein
1481	 58.14	0	1398677..1399825	-	382	145591747	-	Pars_1543	-	major facilitator transporter
1482	 57.58	0	1399871..1400629	-	252	145591748	-	Pars_1544	-	hypothetical protein
1483	 56.04	0	1400632..1401600	-	322	145591749	-	Pars_1545	-	alcohol dehydrogenase
1484	 55.00	0	1401880..1403079	+	399	145591750	-	Pars_1546	-	succinyl-diaminopimelate desuccinylase
1485	 55.04	0	1403076..1403780	-	234	145591751	-	Pars_1547	-	nitroreductase
1486	 54.13	0	1403905..1404231	+	108	145591752	-	Pars_1548	-	hypothetical protein
1487	 49.56	-1	1404235..1404918	+	227	145591753	-	Pars_1549	-	hypothetical protein
1488	 50.46	0	1404902..1405870	-	322	145591754	-	Pars_1550	-	hypothetical protein
1489	 43.97	-2	1405867..1406148	-	93	145591755	-	Pars_1551	-	hypothetical protein
1490	 50.94	0	1406203..1406838	-	211	145591756	-	Pars_1552	-	hypothetical protein
1491	 46.83	-1	1406838..1407200	-	120	145591757	-	Pars_1553	-	hypothetical protein
1492	 52.74	0	1407296..1407934	+	212	145591758	-	Pars_1554	-	hypothetical protein
1493	 52.54	0	1407915..1408544	-	209	145591759	-	Pars_1555	-	hypothetical protein
1494	 54.35	0	1408529..1408999	-	156	145591760	-	Pars_1556	-	hypothetical protein
1495	 54.27	0	1408977..1409444	-	155	145591761	-	Pars_1557	-	hypothetical protein
1496	 54.37	0	1409447..1411219	-	590	145591762	-	Pars_1558	-	putative ATPase RIL
1497	 53.51	0	1411249..1411476	-	75	145591763	-	Pars_1559	-	hypothetical protein
1498	 55.02	0	1411467..1412531	-	354	145591764	-	Pars_1560	-	glycosyl transferase family protein
1499	 47.02	-1	1412661..1413164	+	167	145591765	-	Pars_1561	-	CopG/DNA-binding domain-containing protein
1500	 49.47	-1	1413194..1413478	+	94	145591766	-	Pars_1562	-	hypothetical protein
1501	 50.89	0	1413466..1414194	-	242	145591767	-	Pars_1563	-	hypothetical protein
1502	 50.45	0	1414234..1415238	+	334	145591768	-	Pars_1564	-	sugar phospate transferase
1503	 52.60	0	1415215..1418001	-	928	145591769	-	Pars_1565	-	DEAD/DEAH box helicase domain-containing protein
1504	 52.22	0	1418270..1418809	+	179	145591770	-	Pars_1566	-	hypothetical protein
1505	 49.11	-1	1418789..1419631	-	280	145591771	-	Pars_1567	-	CBS domain-containing protein
1506	 53.62	0	1419679..1420245	-	188	145591772	-	Pars_1568	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1507	 53.14	0	1420246..1420977	-	243	145591773	-	Pars_1569	-	glutaredoxin-like domain-containing protein
1508	 47.24	-1	1421006..1421386	-	126	145591774	-	Pars_1570	-	hypothetical protein
1509	 53.87	0	1421413..1422342	-	309	145591775	-	Pars_1571	-	malate dehydrogenase
1510	 58.80	0	1422411..1423757	-	448	145591776	-	Pars_1572	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1511	 54.50	0	1423795..1424238	-	147	145591777	-	Pars_1573	-	thioredoxin domain-containing protein
1512	 60.70	+1	1424305..1425159	+	284	145591778	-	Pars_1574	-	4-hydroxybenzoate polyprenyltransferase, putative
1513	 56.99	0	1425092..1426228	-	378	145591779	-	Pars_1575	-	major facilitator transporter
1514	 50.08	0	1426209..1426799	-	196	145591780	-	Pars_1576	-	ribosomal protein L6
1515	 53.16	0	1426904..1427140	-	78	145591781	-	Pars_1577	-	hypothetical protein
1516	 54.52	0	1427163..1427771	-	202	145591782	-	Pars_1578	-	hydrolase
1517	 55.00	0	1427768..1427947	-	59	145591783	-	Pars_1579	-	hypothetical protein
1518	 52.53	0	1427925..1430534	-	869	145591784	-	Pars_1580	-	hypothetical protein
1519	 53.68	0	1430605..1431759	+	384	145591785	-	Pars_1581	-	hypothetical protein
1520	 56.47	0	1431750..1432514	+	254	145591786	-	Pars_1582	-	ABC transporter related
1521	 51.95	0	1432511..1434358	+	615	145591787	-	Pars_1583	-	hypothetical protein
1522	 51.36	0	1434394..1436307	-	637	145591788	-	Pars_1584	-	TPR repeat-containing protein
1523	 49.38	-1	1436356..1436517	+	53	145591789	rpl40e	Pars_1585	-	50S ribosomal protein L40e
1524	 47.88	-1	1436475..1436804	-	109	145591790	-	Pars_1586	-	hypothetical protein
1525	 50.16	0	1436804..1437112	-	102	145591791	-	Pars_1587	-	hypothetical protein
1526	 53.27	0	1437232..1439313	+	693	145591792	-	Pars_1588	-	penicillin amidase
1527	 50.44	0	1439297..1439635	+	112	145591793	-	Pars_1589	-	hypothetical protein
1528	 56.62	0	1439658..1440881	+	407	145591794	-	Pars_1590	-	basic membrane lipoprotein
1529	 54.77	0	1440881..1442317	+	478	145591795	-	Pars_1591	-	ABC transporter related
1530	 56.12	0	1442314..1443318	+	334	145591796	-	Pars_1592	-	inner-membrane translocator
1531	 56.00	0	1443315..1444205	+	296	145591797	-	Pars_1593	-	inner-membrane translocator
1532	 49.42	-1	1444233..1444574	+	113	145591798	-	Pars_1594	-	heat shock protein Hsp20
1533	 55.24	0	1444742..1445161	-	139	145591799	-	Pars_1595	-	hypothetical protein
1534	 44.30	-2	1445185..1445421	-	78	145591800	-	Pars_1596	-	hypothetical protein
1535	 53.18	0	1445393..1446178	-	261	145591801	-	Pars_1597	-	uridine phosphorylase
1536	 48.10	-1	1446193..1446429	-	78	145591802	-	Pars_1598	-	hypothetical protein
1537	 52.85	0	1446426..1447373	-	315	145591803	-	Pars_1599	-	mevalonate kinase
1538	 51.50	0	1447405..1448439	-	344	145591804	rplP0	Pars_1600	-	acidic ribosomal protein P0
1539	 48.28	-1	1448482..1449150	-	222	145591805	rpl1P	Pars_1601	-	50S ribosomal protein L1P
1540	 45.38	-1	1449152..1449649	-	165	145591806	-	Pars_1602	-	ribosomal protein L11
1541	 51.52	0	1449683..1450144	-	153	145591807	nusG	Pars_1603	-	transcription antitermination protein NusG
1542	 51.67	0	1450144..1450443	-	99	145591808	-	Pars_1604	-	hypothetical protein
1543	 50.65	0	1450473..1451390	-	305	145591809	-	Pars_1605	-	signal recognition particle-docking protein FtsY
1544	 52.07	0	1451391..1451801	-	136	145591810	-	Pars_1606	-	prefoldin subunit alpha
1545	 44.30	-2	1451803..1452039	-	78	145591811	-	Pars_1607	-	ribosomal LX protein
1546	 49.77	0	1452070..1452732	-	220	145591812	-	Pars_1608	-	translation initiation factor IF-6
1547	 49.10	-1	1452725..1453003	-	92	145591813	-	Pars_1609	-	ribosomal protein L31e
1548	 57.91	0	1453200..1453964	+	254	145591814	-	Pars_1610	-	radical SAM domain-containing protein
1549	 57.30	0	1453961..1454707	+	248	145591815	-	Pars_1611	-	HhH-GPD family protein
1550	 55.56	0	1454735..1455859	+	374	145591816	-	Pars_1612	-	tryptophanyl-tRNA synthetase
1551	 54.58	0	1455852..1456091	-	79	145591817	-	Pars_1613	-	deoxyribonuclease
1552	 49.26	-1	1456247..1456585	-	112	145591818	-	Pars_1614	-	PilT domain-containing protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.