IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1366	 57.86	0	1285038..1285457	+	139	145591632	-	Pars_1424	-	hypothetical protein
1367	 46.67	-1	1285486..1285650	+	54	145591633	-	Pars_1425	-	30S ribosomal protein S30e
1368	 55.82	0	1285654..1286796	+	380	145591634	-	Pars_1426	-	hypothetical protein
1369	 60.22	0	1286813..1287370	+	185	145591635	-	Pars_1427	-	thymidine kinase
1370	 52.21	0	1287367..1287864	-	165	145591636	-	Pars_1428	-	bacterio-opsin activator
1371	 49.85	0	1287970..1288296	+	108	145591637	-	Pars_1429	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1372	 55.67	0	1288517..1289425	+	302	145591638	-	Pars_1430	-	radical SAM domain-containing protein
1373	 53.65	0	1289422..1290558	-	378	145591639	-	Pars_1431	-	hypothetical protein
1374	 55.09	0	1290555..1291910	-	451	145591640	-	Pars_1432	-	type III restriction enzyme, res subunit
1375	 56.78	0	1291901..1292770	-	289	145591641	-	Pars_1433	-	ornithine cyclodeaminase/mu-crystallin
1376	 50.54	0	1292795..1293439	-	214	145591642	-	Pars_1434	-	hypothetical protein
1377	 56.98	0	1293504..1293947	+	147	145591643	-	Pars_1435	-	abortive infection protein
1378	 56.88	0	1293927..1295357	-	476	145591644	-	Pars_1436	-	radical SAM domain-containing protein
1379	 45.43	-1	1295424..1295861	+	145	145591645	-	Pars_1437	-	hypothetical protein
1380	 47.54	-1	1295950..1296315	+	121	145591646	-	Pars_1438	-	ribosomal protein S24e
1381	 51.01	0	1296318..1296515	+	65	145591647	-	Pars_1439	-	30S ribosomal protein S27ae
1382	 56.56	0	1296515..1297513	+	332	145591648	-	Pars_1440	-	metalloendopeptidase glycoprotease family
1383	 54.13	0	1297536..1297862	+	108	145591649	-	Pars_1441	-	hypothetical protein
1384	 55.23	0	1297862..1298167	+	101	145591650	-	Pars_1442	-	hypothetical protein
1385	 55.07	0	1298128..1299360	-	410	145591651	-	Pars_1443	-	radical SAM domain-containing protein
1386	 54.83	0	1299426..1300118	+	230	145591652	-	Pars_1444	-	hypothetical protein
1387	 51.78	0	1300239..1302677	+	812	145591653	-	Pars_1445	-	phosphoenolpyruvate synthase
1388	 43.14	-2	1302708..1303421	+	237	145591654	-	Pars_1446	-	MscS mechanosensitive ion channel
1389	 45.71	-1	1303411..1304040	-	209	145591655	-	Pars_1447	-	potassium transport peripheral protein, conjectural
1390	 53.36	0	1304293..1304961	+	222	145591656	-	Pars_1448	-	hypothetical protein
1391	 52.76	0	1304966..1305562	+	198	145591657	-	Pars_1449	-	hypothetical protein
1392	 43.42	-2	1305627..1305854	+	75	145591658	-	Pars_1450	-	hypothetical protein
1393	 50.64	0	1305851..1306555	+	234	145591659	-	Pars_1451	-	hypothetical protein
1394	 60.75	+1	1306552..1307835	+	427	145591660	-	Pars_1452	-	type II secretion system protein, conjectural
1395	 43.75	-2	1308137..1308376	-	79	145591661	-	Pars_1453	-	hypothetical protein
1396	 61.99	+1	1308656..1309960	-	434	145591662	-	Pars_1454	-	hypothetical protein
1397	 62.68	+1	1310026..1314339	-	1437	145591663	-	Pars_1455	-	hypothetical protein
1398	 47.97	-1	1314593..1314838	-	81	145591664	-	Pars_1456	-	hypothetical protein
1399	 57.04	0	1316043..1316312	-	89	145591665	-	Pars_1458	-	hypothetical protein
1400	 57.00	0	1316412..1317197	-	261	145591666	-	Pars_1459	-	hypothetical protein
1401	 57.92	0	1317587..1317952	+	121	145591667	-	Pars_1460	-	hypothetical protein
1402	 59.66	0	1318043..1318399	-	118	145591668	-	Pars_1461	-	hypothetical protein
1403	 62.85	+1	1318396..1320465	-	689	145591669	-	Pars_1462	-	hypothetical protein
1404	 50.43	0	1320503..1322011	-	502	145591670	-	Pars_1463	-	hypothetical protein
1405	 58.47	0	1322067..1324481	-	804	145591671	-	Pars_1464	-	hypothetical protein
1406	 51.50	0	1324534..1326129	-	531	145591672	-	Pars_1465	-	hypothetical protein
1407	 60.53	0	1326288..1326923	+	211	145591673	-	Pars_1466	-	hypothetical protein
1408	 63.78	+1	1326972..1329191	+	739	145591674	-	Pars_1467	-	hypothetical protein
1409	 52.58	0	1329213..1329503	+	96	145591675	-	Pars_1468	-	hypothetical protein
1410	 59.39	0	1329484..1329813	+	109	145591676	-	Pars_1469	-	hypothetical protein
1411	 58.15	0	1329842..1331038	+	398	145591677	-	Pars_1470	-	hypothetical protein
1412	 54.24	0	1331073..1331555	+	160	145591678	-	Pars_1471	-	hypothetical protein
1413	 55.62	0	1331615..1332592	+	325	145591679	-	Pars_1472	-	hypothetical protein
1414	 51.16	0	1332654..1332911	-	85	145591680	-	Pars_1473	-	CopG family transcriptional regulator
1415	 56.75	0	1332961..1333464	+	167	145591681	-	Pars_1474	-	hypothetical protein
1416	 58.02	0	1333455..1334252	+	265	145591682	-	Pars_1475	-	hypothetical protein
1417	 59.70	0	1334254..1335042	+	262	145591683	-	Pars_1476	-	hypothetical protein
1418	 59.37	0	1335074..1337992	+	972	145591684	-	Pars_1477	-	hypothetical protein
1419	 62.60	+1	1337986..1338477	+	163	145591685	-	Pars_1478	-	hypothetical protein
1420	 53.18	0	1338526..1338792	+	88	145591686	-	Pars_1479	-	hypothetical protein
1421	 41.58	-2	1338789..1339091	+	100	145591687	-	Pars_1480	-	hypothetical protein
1422	 48.63	-1	1339311..1340114	+	267	145591688	-	Pars_1481	-	arginase/agmatinase/formiminoglutamase
1423	 46.58	-1	1340102..1341505	+	467	145591689	-	Pars_1482	-	histidine ammonia-lyase
1424	 46.55	-1	1341496..1342683	+	395	145591690	-	Pars_1483	-	imidazolonepropionase
1425	 51.00	0	1342669..1344519	-	616	145591691	-	Pars_1484	-	urocanate hydratase
1426	 55.12	0	1344653..1345804	-	383	145591692	-	Pars_1485	-	cystathionine gamma-synthase
1427	 38.36	-2	1346177..1346395	+	72	145591693	-	Pars_1486	-	hypothetical protein
1428	 53.23	0	1346411..1346983	+	190	145591694	-	Pars_1487	-	hypothetical protein
1429	 47.09	-1	1347286..1347714	+	142	145591695	-	Pars_1488	-	signal-transduction protein
1430	 49.28	-1	1347743..1348156	+	137	145591696	-	Pars_1489	-	UspA domain-containing protein
1431	 54.72	0	1348157..1349353	-	398	145591697	-	Pars_1490	-	major facilitator transporter
1432	 55.61	0	1349428..1350078	+	216	145591698	-	Pars_1491	-	hypothetical protein
1433	 46.89	-1	1350903..1351079	+	58	145591699	-	Pars_1493	-	preprotein translocase subunit SecG
1434	 53.00	0	1351403..1352983	+	526	145591700	-	Pars_1494	-	extracellular solute-binding protein
1435	 58.46	0	1352980..1353771	-	263	145591701	-	Pars_1495	-	binding-protein-dependent transport systems inner membrane component
1436	 53.94	0	1353768..1354781	-	337	145591702	-	Pars_1496	-	binding-protein-dependent transport systems inner membrane component
1437	 57.83	0	1354940..1357339	+	799	145591703	valS	Pars_1497	-	valyl-tRNA synthetase
1438	 59.54	0	1357350..1358177	+	275	145591704	-	Pars_1498	-	ribulose-1,5-biphosphate synthetase
1439	 54.63	0	1358161..1358376	+	71	145591705	-	Pars_1499	-	ribosomal protein L24, conjectural
1440	 42.78	-2	1358506..1360008	-	500	145591706	-	Pars_1500	-	pyridoxal-dependent decarboxylase
1441	 58.40	0	1360314..1361015	-	233	145591707	-	Pars_1501	-	ABC transporter related
1442	 61.02	+1	1361012..1361755	-	247	145591708	-	Pars_1502	-	ABC transporter related
1443	 59.56	0	1361727..1363175	-	482	145591709	-	Pars_1503	-	extracellular ligand-binding receptor
1444	 56.42	0	1363234..1364199	+	321	145591710	-	Pars_1504	-	inner-membrane translocator
1445	 60.22	0	1364196..1365311	+	371	145591711	-	Pars_1505	-	inner-membrane translocator
1446	 60.30	0	1365268..1365597	-	109	145591712	-	Pars_1506	-	hypothetical protein
1447	 62.05	+1	1365604..1366275	-	223	145591713	-	Pars_1507	-	ABC transporter related
1448	 58.70	0	1366257..1366997	-	246	145591714	-	Pars_1508	-	sulfate ABC transporter, permease protein, putative
1449	 61.70	+1	1367150..1368136	+	328	145591715	-	Pars_1509	-	hypothetical protein
1450	 55.86	0	1368213..1368869	+	218	145591716	-	Pars_1510	-	amino acid-binding ACT domain-containing protein
1451	 61.06	+1	1369061..1370059	-	332	145591717	-	Pars_1511	-	PP-loop domain-containing protein
1452	 56.76	0	1370234..1371121	+	295	145591718	-	Pars_1512	-	hypothetical protein
1453	 57.06	0	1371169..1372032	-	287	145591719	-	Pars_1513	-	hypothetical protein
1454	 62.53	+1	1372013..1373413	-	466	145591720	-	Pars_1514	-	methyltransferase small
1455	 52.63	0	1373592..1373762	+	56	145591721	-	Pars_1515	-	hypothetical protein
1456	 50.35	0	1377175..1377744	+	189	145591722	-	Pars_1518	-	hypothetical protein
1457	 54.92	0	1377741..1379153	+	470	145591723	-	Pars_1519	-	ATP-dependent protease La
1458	 60.48	0	1379253..1379543	+	96	145591724	-	Pars_1520	-	hypothetical protein
1459	 52.59	0	1380639..1380773	-	44	145591725	-	Pars_1521	-	hypothetical protein
1460	 65.22	+1	1380863..1381138	+	91	145591726	-	Pars_1522	-	hypothetical protein
1461	 62.73	+1	1381135..1383369	-	744	145591727	-	Pars_1523	-	DEAD/DEAH box helicase domain-containing protein
1462	 60.38	0	1383374..1384438	-	354	145591728	-	Pars_1524	-	major facilitator transporter
1463	 55.35	0	1384435..1384929	-	164	145591729	-	Pars_1525	-	hypothetical protein
1464	 47.77	-1	1385120..1385500	+	126	145591730	-	Pars_1526	-	ferric uptake regulator family protein
1465	 61.15	+1	1385591..1386841	+	416	145591731	-	Pars_1527	-	FAD dependent oxidoreductase
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.