IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1325	 61.36	+1	1240776..1242602	-	608	145591591	-	Pars_1379	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1326	 55.10	0	1242642..1243151	-	169	145591592	-	Pars_1380	-	hypothetical protein
1327	 51.98	0	1243177..1245396	-	739	145591593	-	Pars_1381	-	hypothetical protein
1328	 58.22	0	1245525..1246211	+	228	145591594	-	Pars_1382	-	dimethyladenosine transferase
1329	 59.26	0	1246233..1247096	+	287	145591595	-	Pars_1383	-	ribonuclease Z
1330	 55.20	0	1247102..1247860	-	252	145591596	-	Pars_1384	-	methyltransferase type 11
1331	 57.88	0	1247857..1249416	-	519	145591597	-	Pars_1385	-	ATPase
1332	 56.23	0	1249553..1251517	+	654	145591598	-	Pars_1386	-	AMP-dependent synthetase and ligase
1333	 49.31	-1	1252300..1253163	+	287	145591599	-	Pars_1388	-	dihydrodipicolinate synthetase
1334	 55.30	0	1253581..1254486	-	301	145591600	-	Pars_1390	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
1335	 63.51	+1	1254688..1255416	+	242	145591601	-	Pars_1391	-	hypothetical protein
1336	 60.49	0	1255419..1255742	-	107	145591602	-	Pars_1392	-	DNA polymerase beta subunit
1337	 59.66	0	1255754..1256167	-	137	145591603	-	Pars_1393	-	HEPN domain-containing protein
1338	 58.21	0	1256194..1258227	-	677	145591604	-	Pars_1394	-	hypothetical protein
1339	 60.64	+1	1258452..1259546	-	364	145591605	-	Pars_1395	-	hypothetical protein
1340	 62.30	+1	1259713..1260651	-	312	145591606	-	Pars_1396	-	Fis family transcriptional regulator
1341	 52.02	0	1260655..1261296	-	213	145591607	-	Pars_1397	-	hypothetical protein
1342	 60.14	0	1261327..1261740	-	137	145591608	-	Pars_1398	-	hypothetical protein
1343	 58.72	0	1261730..1262308	-	192	145591609	-	Pars_1399	-	zinc finger SWIM domain-containing protein
1344	 58.61	0	1262580..1263647	+	355	145591610	-	Pars_1400	-	hypothetical protein
1345	 60.96	+1	1263622..1265145	-	507	145591611	-	Pars_1401	-	carbohydrate kinase, YjeF related protein
1346	 43.43	-2	1265188..1266663	-	491	145591612	-	Pars_1402	-	type I phosphodiesterase/nucleotide pyrophosphatase
1347	 49.40	-1	1266700..1266948	-	82	145591613	-	Pars_1403	-	hypothetical protein
1348	 61.02	+1	1267135..1268286	+	383	145591614	-	Pars_1404	-	aminotransferase class-III
1349	 56.47	0	1268283..1269371	-	362	145591615	-	Pars_1405	-	aminotransferase, class I and II
1350	 55.70	0	1269368..1269823	-	151	145591616	-	Pars_1406	-	vitamin K epoxide reductase
1351	 61.04	+1	1269930..1270427	+	165	145591617	-	Pars_1407	-	hypothetical protein
1352	 56.38	0	1270516..1271205	-	229	145591618	-	Pars_1408	-	paREP7
1353	 62.94	+1	1271253..1272056	+	267	145591619	-	Pars_1409	-	radical SAM domain-containing protein
1354	 64.16	+1	1272044..1272562	-	172	145591620	-	Pars_1410	-	paREP11
1355	 60.95	+1	1272845..1273159	+	104	145591621	-	Pars_1411	-	hypothetical protein
1356	 51.35	0	1273211..1273432	+	73	145591622	-	Pars_1412	-	hypothetical protein
1357	 62.36	+1	1275320..1275946	-	208	145591623	-	Pars_1415	-	phosphoribosylanthranilate isomerase
1358	 53.53	0	1275970..1277088	-	372	145591624	-	Pars_1416	-	hypothetical protein
1359	 57.81	0	1277233..1278666	+	477	145591625	-	Pars_1417	-	Ferritin, Dps family protein
1360	 62.85	+1	1278824..1280053	+	409	145591626	-	Pars_1418	-	tryptophan synthase subunit beta
1361	 62.38	+1	1280094..1281095	+	333	145591627	-	Pars_1419	-	anthranilate phosphoribosyltransferase
1362	 62.33	+1	1281092..1282360	+	422	145591628	-	Pars_1420	-	anthranilate synthase component I
1363	 61.14	+1	1282351..1282929	+	192	145591629	-	Pars_1421	-	anthranilate synthase component II
1364	 62.43	+1	1282931..1283638	+	235	145591630	trpA	Pars_1422	-	tryptophan synthase subunit alpha
1365	 58.68	0	1283732..1284946	-	404	145591631	-	Pars_1423	-	citrate transporter
1366	 57.86	0	1285038..1285457	+	139	145591632	-	Pars_1424	-	hypothetical protein
1367	 46.67	-1	1285486..1285650	+	54	145591633	-	Pars_1425	-	30S ribosomal protein S30e
1368	 55.82	0	1285654..1286796	+	380	145591634	-	Pars_1426	-	hypothetical protein
1369	 60.22	0	1286813..1287370	+	185	145591635	-	Pars_1427	-	thymidine kinase
1370	 52.21	0	1287367..1287864	-	165	145591636	-	Pars_1428	-	bacterio-opsin activator
1371	 49.85	0	1287970..1288296	+	108	145591637	-	Pars_1429	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1372	 55.67	0	1288517..1289425	+	302	145591638	-	Pars_1430	-	radical SAM domain-containing protein
1373	 53.65	0	1289422..1290558	-	378	145591639	-	Pars_1431	-	hypothetical protein
1374	 55.09	0	1290555..1291910	-	451	145591640	-	Pars_1432	-	type III restriction enzyme, res subunit
1375	 56.78	0	1291901..1292770	-	289	145591641	-	Pars_1433	-	ornithine cyclodeaminase/mu-crystallin
1376	 50.54	0	1292795..1293439	-	214	145591642	-	Pars_1434	-	hypothetical protein
1377	 56.98	0	1293504..1293947	+	147	145591643	-	Pars_1435	-	abortive infection protein
1378	 56.88	0	1293927..1295357	-	476	145591644	-	Pars_1436	-	radical SAM domain-containing protein
1379	 45.43	-1	1295424..1295861	+	145	145591645	-	Pars_1437	-	hypothetical protein
1380	 47.54	-1	1295950..1296315	+	121	145591646	-	Pars_1438	-	ribosomal protein S24e
1381	 51.01	0	1296318..1296515	+	65	145591647	-	Pars_1439	-	30S ribosomal protein S27ae
1382	 56.56	0	1296515..1297513	+	332	145591648	-	Pars_1440	-	metalloendopeptidase glycoprotease family
1383	 54.13	0	1297536..1297862	+	108	145591649	-	Pars_1441	-	hypothetical protein
1384	 55.23	0	1297862..1298167	+	101	145591650	-	Pars_1442	-	hypothetical protein
1385	 55.07	0	1298128..1299360	-	410	145591651	-	Pars_1443	-	radical SAM domain-containing protein
1386	 54.83	0	1299426..1300118	+	230	145591652	-	Pars_1444	-	hypothetical protein
1387	 51.78	0	1300239..1302677	+	812	145591653	-	Pars_1445	-	phosphoenolpyruvate synthase
1388	 43.14	-2	1302708..1303421	+	237	145591654	-	Pars_1446	-	MscS mechanosensitive ion channel
1389	 45.71	-1	1303411..1304040	-	209	145591655	-	Pars_1447	-	potassium transport peripheral protein, conjectural
1390	 53.36	0	1304293..1304961	+	222	145591656	-	Pars_1448	-	hypothetical protein
1391	 52.76	0	1304966..1305562	+	198	145591657	-	Pars_1449	-	hypothetical protein
1392	 43.42	-2	1305627..1305854	+	75	145591658	-	Pars_1450	-	hypothetical protein
1393	 50.64	0	1305851..1306555	+	234	145591659	-	Pars_1451	-	hypothetical protein
1394	 60.75	+1	1306552..1307835	+	427	145591660	-	Pars_1452	-	type II secretion system protein, conjectural
1395	 43.75	-2	1308137..1308376	-	79	145591661	-	Pars_1453	-	hypothetical protein
1396	 61.99	+1	1308656..1309960	-	434	145591662	-	Pars_1454	-	hypothetical protein
1397	 62.68	+1	1310026..1314339	-	1437	145591663	-	Pars_1455	-	hypothetical protein
1398	 47.97	-1	1314593..1314838	-	81	145591664	-	Pars_1456	-	hypothetical protein
1399	 57.04	0	1316043..1316312	-	89	145591665	-	Pars_1458	-	hypothetical protein
1400	 57.00	0	1316412..1317197	-	261	145591666	-	Pars_1459	-	hypothetical protein
1401	 57.92	0	1317587..1317952	+	121	145591667	-	Pars_1460	-	hypothetical protein
1402	 59.66	0	1318043..1318399	-	118	145591668	-	Pars_1461	-	hypothetical protein
1403	 62.85	+1	1318396..1320465	-	689	145591669	-	Pars_1462	-	hypothetical protein
1404	 50.43	0	1320503..1322011	-	502	145591670	-	Pars_1463	-	hypothetical protein
1405	 58.47	0	1322067..1324481	-	804	145591671	-	Pars_1464	-	hypothetical protein
1406	 51.50	0	1324534..1326129	-	531	145591672	-	Pars_1465	-	hypothetical protein
1407	 60.53	0	1326288..1326923	+	211	145591673	-	Pars_1466	-	hypothetical protein
1408	 63.78	+1	1326972..1329191	+	739	145591674	-	Pars_1467	-	hypothetical protein
1409	 52.58	0	1329213..1329503	+	96	145591675	-	Pars_1468	-	hypothetical protein
1410	 59.39	0	1329484..1329813	+	109	145591676	-	Pars_1469	-	hypothetical protein
1411	 58.15	0	1329842..1331038	+	398	145591677	-	Pars_1470	-	hypothetical protein
1412	 54.24	0	1331073..1331555	+	160	145591678	-	Pars_1471	-	hypothetical protein
1413	 55.62	0	1331615..1332592	+	325	145591679	-	Pars_1472	-	hypothetical protein
1414	 51.16	0	1332654..1332911	-	85	145591680	-	Pars_1473	-	CopG family transcriptional regulator
1415	 56.75	0	1332961..1333464	+	167	145591681	-	Pars_1474	-	hypothetical protein
1416	 58.02	0	1333455..1334252	+	265	145591682	-	Pars_1475	-	hypothetical protein
1417	 59.70	0	1334254..1335042	+	262	145591683	-	Pars_1476	-	hypothetical protein
1418	 59.37	0	1335074..1337992	+	972	145591684	-	Pars_1477	-	hypothetical protein
1419	 62.60	+1	1337986..1338477	+	163	145591685	-	Pars_1478	-	hypothetical protein
1420	 53.18	0	1338526..1338792	+	88	145591686	-	Pars_1479	-	hypothetical protein
1421	 41.58	-2	1338789..1339091	+	100	145591687	-	Pars_1480	-	hypothetical protein
1422	 48.63	-1	1339311..1340114	+	267	145591688	-	Pars_1481	-	arginase/agmatinase/formiminoglutamase
1423	 46.58	-1	1340102..1341505	+	467	145591689	-	Pars_1482	-	histidine ammonia-lyase
1424	 46.55	-1	1341496..1342683	+	395	145591690	-	Pars_1483	-	imidazolonepropionase
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.