IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
85	 51.74	0	80332..80733	-	133	145590352	-	Pars_0087	-	hypothetical protein
86	 48.72	-1	81058..81369	+	103	145590353	-	Pars_0088	-	50S ribosomal protein L14e
87	 56.12	0	81366..82361	+	331	145590354	-	Pars_0089	-	H/ACA RNA-protein complex component Cbf5p
88	 53.06	0	82385..82678	+	97	145590355	-	Pars_0090	-	hypothetical protein
89	 54.14	0	82675..83169	+	164	145590356	-	Pars_0091	-	hypothetical protein
90	 48.80	-1	83190..83648	+	152	145590357	-	Pars_0092	-	hypothetical protein
91	 53.59	0	83645..84577	+	310	145590358	-	Pars_0093	-	oxidoreductase domain-containing protein
92	 50.09	0	84632..85174	+	180	145590359	-	Pars_0094	-	hypothetical protein
93	 54.12	0	85228..85713	+	161	145590360	-	Pars_0095	-	hypothetical protein
94	 56.14	0	85703..86500	-	265	145590361	-	Pars_0096	-	competence damage-inducible protein A
95	 57.49	0	86510..87370	-	286	145590362	-	Pars_0097	-	hypothetical protein
96	 51.45	0	87429..87842	+	137	145590363	-	Pars_0098	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
97	 53.85	0	87839..88072	+	77	145590364	-	Pars_0099	-	hypothetical protein
98	 55.64	0	88041..88430	-	129	145590365	-	Pars_0100	-	hypothetical protein
99	 52.21	0	88515..89171	-	218	145590366	-	Pars_0101	-	HhH-GPD family protein
100	 51.20	0	89217..89714	+	165	145590367	-	Pars_0102	-	hypothetical protein
101	 53.56	0	90082..90867	+	261	145590368	-	Pars_0103	-	hypothetical protein
102	 53.16	0	90897..92369	+	490	145590369	-	Pars_0104	-	carboxypeptidase Taq
103	 58.71	0	92366..92956	-	196	145590370	-	Pars_0105	-	hypothetical protein
104	 57.36	0	93044..93505	+	153	145590371	-	Pars_0106	-	phosphopantetheine adenylyltransferase
105	 56.29	0	93482..94792	-	436	145590372	-	Pars_0107	-	hypothetical protein
106	 47.13	-1	94819..95166	-	115	145590373	-	Pars_0108	-	hypothetical protein
107	 51.61	0	95281..95559	+	92	145590374	-	Pars_0109	-	hypothetical protein
108	 59.63	0	95540..96349	-	269	145590375	-	Pars_0110	-	hypothetical protein
109	 62.38	+1	96558..97397	+	279	145590376	-	Pars_0111	-	prephenate dehydratase
110	 62.73	+1	97498..99630	-	710	145590377	-	Pars_0112	-	DEAD/DEAH box helicase domain-containing protein
111	 60.11	0	99714..101756	+	680	145590378	-	Pars_0113	-	MCM family protein
112	 56.10	0	101779..102270	+	163	145590379	-	Pars_0114	-	PaREP1 domain-containing protein
113	 58.53	0	102487..102990	+	167	145590380	-	Pars_0115	-	hypothetical protein
114	 46.44	-1	103752..104201	+	149	145590381	-	Pars_0116	-	hypothetical protein
115	 56.75	0	104445..104918	+	157	145590382	-	Pars_0117	-	hypothetical protein
116	 63.83	+1	104912..105193	+	93	145590383	-	Pars_0118	-	hypothetical protein
117	 60.05	0	105224..107929	+	901	145590384	-	Pars_0119	-	hypothetical protein
118	 61.65	+1	107883..108899	-	338	145590385	-	Pars_0120	-	aminotransferase, class I and II
119	 53.27	0	108920..109255	-	111	145590386	-	Pars_0121	-	paREP15, putative coiled-coil protein
120	 63.22	+1	109276..110727	-	483	145590387	-	Pars_0122	-	radical SAM domain-containing protein
121	 54.50	0	110838..111026	+	62	145590388	-	Pars_0123	-	hypothetical protein
122	 60.00	0	111013..111552	+	179	145590389	-	Pars_0124	-	hypothetical protein
123	 63.07	+1	111540..111845	+	101	145590390	-	Pars_0125	-	hypothetical protein
124	 66.46	+2	111890..112369	+	159	145590391	-	Pars_0126	-	methyltransferase type 11
125	 59.66	0	112389..113759	+	456	145590392	-	Pars_0127	-	hypothetical protein
126	 58.17	0	113756..114214	+	152	145590393	-	Pars_0128	-	hypothetical protein
127	 56.94	0	114277..117627	+	1116	145590394	-	Pars_0129	-	hypothetical protein
128	 55.81	0	117624..118277	+	217	145590395	-	Pars_0130	-	hypothetical protein
129	 59.92	0	118274..118792	+	172	145590396	-	Pars_0131	-	hypothetical protein
130	 64.77	+1	118825..119934	+	369	145590397	-	Pars_0132	-	SufBD protein
131	 61.43	+1	119927..121225	-	432	145590398	-	Pars_0133	-	hypothetical protein
132	 57.57	0	121873..122883	+	336	145590399	-	Pars_0134	-	hypothetical protein
133	 58.52	0	123297..124106	-	269	145590400	-	Pars_0135	-	hypothetical protein
134	 57.76	0	124358..124660	-	100	145590401	-	Pars_0136	-	hypothetical protein
135	 51.27	0	124765..125394	-	209	145590402	-	Pars_0137	-	hypothetical protein
136	 52.80	0	126196..127140	-	314	145590403	-	Pars_0138	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
137	 48.95	-1	127137..129038	-	633	145590404	-	Pars_0139	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
138	 44.95	-1	129211..129804	-	197	145590405	-	Pars_0140	-	multiple antibiotic resistance (MarC)-related protein
139	 52.74	0	129917..131137	-	406	145590406	-	Pars_0141	-	hypothetical protein
140	 43.79	-2	131162..131620	+	152	145590407	-	Pars_0142	-	GCN5-related N-acetyltransferase
141	 58.17	0	131745..132827	+	360	145590408	-	Pars_0143	-	carbamoyl phosphate synthase small subunit
142	 59.81	0	132820..135897	+	1025	145590409	carB	Pars_0144	-	carbamoyl phosphate synthase large subunit
143	 59.12	0	135891..136685	+	264	145590410	-	Pars_0145	-	alpha-L-glutamate ligase
144	 62.60	+1	136772..137779	-	335	145590411	-	Pars_0146	-	AIR synthase-like protein
145	 58.33	0	137807..138694	+	295	145590412	-	Pars_0147	-	GntR family transcriptional regulator
146	 58.73	0	138708..139274	+	188	145590413	-	Pars_0148	-	hypothetical protein
147	 55.99	0	139264..140406	+	380	145590414	-	Pars_0149	-	extracellular solute-binding protein
148	 50.31	0	140396..140878	-	160	145590415	-	Pars_0150	-	magnesium-dependent phosphatase-1
149	 53.44	0	140914..141291	+	125	145590416	-	Pars_0151	-	hypothetical protein
150	 58.14	0	141313..141828	+	171	145590417	-	Pars_0152	-	molybdenum cofactor synthesis domain-containing protein
151	 60.26	0	141825..142355	+	176	145590418	-	Pars_0153	-	hypothetical protein
152	 61.42	+1	142339..142929	-	196	145590419	-	Pars_0154	-	abortive infection protein
153	 51.52	0	142975..143469	+	164	145590420	-	Pars_0155	-	hypothetical protein
154	 55.67	0	143450..144040	-	196	145590421	-	Pars_0156	-	dTMP kinase
155	 59.72	0	144088..144663	+	191	145590422	hisH	Pars_0157	-	imidazole glycerol phosphate synthase subunit HisH
156	 62.47	+1	144632..145060	-	142	145590423	-	Pars_0158	-	phosphoribosyl-AMP cyclohydrolase
157	 60.95	+1	145119..146132	+	337	145590424	-	Pars_0159	-	aminotransferase, class I and II
158	 59.89	0	146136..147020	+	294	145590425	hisG	Pars_0160	-	ATP phosphoribosyltransferase
159	 60.20	0	147036..148256	+	406	145590426	-	Pars_0161	-	adenylosuccinate lyase
160	 62.49	+1	148285..149289	+	334	145590427	-	Pars_0162	-	adenylosuccinate synthetase
161	 57.96	0	149315..149785	+	156	145590428	-	Pars_0163	-	PaREP1 domain-containing protein
162	 60.14	0	149884..151323	+	479	145590429	-	Pars_0164	-	FAD dependent oxidoreductase
163	 54.92	0	151422..152102	+	226	145590430	-	Pars_0165	-	hypothetical protein
164	 63.86	+1	152188..152472	-	94	145590431	-	Pars_0166	-	phosphoribosyl-ATP pyrophosphohydrolase
165	 66.13	+2	152469..153578	-	369	145590432	-	Pars_0167	-	histidinol dehydrogenase
166	 64.15	+1	153575..154330	-	251	145590433	-	Pars_0168	-	imidazoleglycerol phosphate synthase, cyclase subunit
167	 55.94	0	154381..154809	+	142	145590434	-	Pars_0169	-	hypothetical protein
168	 65.23	+1	154858..155415	+	185	145590435	-	Pars_0170	-	imidazoleglycerol-phosphate dehydratase
169	 62.15	+1	155412..156098	+	228	145590436	-	Pars_0171	-	histidine biosynthesis
170	 58.45	0	156272..157768	+	498	145590437	-	Pars_0172	-	hypothetical protein
171	 48.82	-1	157775..158155	-	126	145590438	-	Pars_0173	-	hypothetical protein
172	 55.05	0	158218..158949	+	243	145590439	-	Pars_0174	-	hypothetical protein
173	 48.00	-1	159150..159374	+	74	145590440	-	Pars_0175	-	hypothetical protein
174	 58.05	0	159357..160703	-	448	145590441	-	Pars_0176	-	4-aminobutyrate aminotransferase
175	 55.86	0	160878..161636	-	252	145590442	-	Pars_0177	-	FeS assembly ATPase SufC
176	 56.82	0	161771..162034	+	87	145590443	-	Pars_0178	-	hypothetical protein
177	 52.58	0	162057..162617	+	186	145590444	-	Pars_0179	-	hypothetical protein
178	 61.04	+1	162660..163388	-	242	145590445	-	Pars_0180	-	aspartate/glutamate/uridylate kinase
179	 57.01	0	163388..164392	-	334	145590446	-	Pars_0181	-	polyprenyl synthetase
180	 60.86	+1	164433..165173	+	246	145590447	-	Pars_0182	-	hypothetical protein
181	 53.13	0	165296..165694	+	132	145590448	-	Pars_0183	-	hypothetical protein
182	 56.16	0	165792..166124	+	110	145590449	-	Pars_0184	-	hypothetical protein
183	 60.94	+1	166127..166981	+	284	145590450	-	Pars_0185	-	thiamine monophosphate kinase-like protein
184	 56.72	0	167014..167727	+	237	145590451	-	Pars_0186	-	hypothetical protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.