IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1273	 52.38	0	1196494..1196808	-	104	145591539	-	Pars_1326	-	hypothetical protein
1274	 51.49	0	1196856..1197995	+	379	145591540	-	Pars_1327	-	hypothetical protein
1275	 55.60	0	1198314..1199063	+	249	145591541	-	Pars_1328	-	extracellular solute-binding protein
1276	 52.15	0	1199048..1199488	+	146	145591542	-	Pars_1329	-	hypothetical protein
1277	 55.12	0	1199526..1200287	+	253	145591543	-	Pars_1330	-	NAD-dependent deacetylase
1278	 50.38	0	1200268..1200789	-	173	145591544	-	Pars_1331	-	hypothetical protein
1279	 49.05	-1	1200786..1201205	-	139	145591545	-	Pars_1332	-	signal-transduction protein
1280	 47.27	-1	1201228..1201557	-	109	145591546	-	Pars_1333	-	hypothetical protein
1281	 55.87	0	1201554..1201979	-	141	145591547	-	Pars_1334	-	hypothetical protein
1282	 40.58	-2	1201976..1202113	-	45	145591548	-	Pars_1335	-	hypothetical protein
1283	 43.66	-2	1202110..1202322	-	70	145591549	-	Pars_1336	-	hypothetical protein
1284	 53.86	0	1202581..1203267	+	228	145591550	-	Pars_1337	-	nucleotidyl transferase
1285	 56.28	0	1203257..1204969	+	570	145591551	gltX	Pars_1338	-	glutamyl-tRNA synthetase
1286	 56.55	0	1205088..1206095	+	335	145591552	-	Pars_1339	-	hypothetical protein
1287	 52.16	0	1206124..1206516	+	130	145591553	-	Pars_1340	-	hypothetical protein
1288	 53.37	0	1206458..1207081	-	207	145591554	-	Pars_1341	-	hypothetical protein
1289	 53.94	0	1207217..1208512	-	431	145591555	-	Pars_1342	-	asparaginyl-tRNA synthetase
1290	 50.60	0	1208515..1208763	-	82	145591556	-	Pars_1343	-	hypothetical protein
1291	 55.35	0	1208760..1209572	-	270	145591557	-	Pars_1344	-	6-phosphogluconate dehydrogenase, NAD-binding
1292	 58.87	0	1209575..1210651	+	358	145591558	-	Pars_1345	-	Sua5/YciO/YrdC/YwlC family protein
1293	 52.90	0	1210648..1211424	+	258	145591559	-	Pars_1346	-	methyltransferase type 11
1294	 52.63	0	1211454..1212308	+	284	145591560	-	Pars_1347	-	ribose-phosphate pyrophosphokinase
1295	 58.85	0	1212303..1213313	-	336	145591561	-	Pars_1348	-	histone deacetylase superfamily protein
1296	 43.59	-2	1213372..1213566	+	64	145591562	-	Pars_1349	-	hypothetical protein
1297	 53.05	0	1213544..1214182	-	212	145591563	-	Pars_1350	-	creatininase
1298	 53.30	0	1214302..1214967	+	221	145591564	-	Pars_1351	-	GTP cyclohydrolase IIA
1299	 53.04	0	1214964..1215638	+	224	145591565	-	Pars_1352	-	hypothetical protein
1300	 54.81	0	1215674..1216297	+	207	145591566	-	Pars_1353	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1301	 50.00	0	1216281..1216694	-	137	145591567	-	Pars_1354	-	hypothetical protein
1302	 55.71	0	1216748..1217824	+	358	145591568	-	Pars_1355	-	geranylgeranyl reductase
1303	 54.40	0	1217819..1218976	-	385	145591569	-	Pars_1356	-	nicotinate phosphoribosyltransferase
1304	 52.66	0	1219011..1220738	+	575	145591570	-	Pars_1357	-	DEAD_2 domain-containing protein
1305	 62.17	+1	1220722..1221210	-	162	145591571	-	Pars_1358	-	hypothetical protein
1306	 56.77	0	1221280..1223088	+	602	145591572	-	Pars_1359	-	DNA topoisomerase
1307	 57.13	0	1223081..1223992	+	303	145591573	-	Pars_1360	-	hypothetical protein
1308	 52.54	0	1224088..1225659	+	523	145591574	-	Pars_1361	-	hypothetical protein
1309	 52.96	0	1225783..1227117	-	444	145591575	-	Pars_1362	-	elongation factor 1-alpha
1310	 56.57	0	1227547..1227843	+	98	145591576	-	Pars_1363	-	ribosomal protein L34e
1311	 50.99	0	1227847..1228401	+	184	145591577	-	Pars_1364	-	cytidylate kinase
1312	 55.62	0	1228431..1229480	+	349	145591578	-	Pars_1365	-	putative glutamate synthase subunit beta
1313	 53.11	0	1229482..1230189	-	235	145591579	-	Pars_1366	-	fibrillarin
1314	 61.30	+1	1230616..1231566	-	316	145591580	-	Pars_1367	-	paREP2b
1315	 57.52	0	1231698..1232156	-	152	145591581	-	Pars_1368	-	hypothetical protein
1316	 49.04	-1	1233055..1233780	+	241	145591582	-	Pars_1370	-	DNA polymerase beta subunit
1317	 57.98	0	1233751..1234245	-	164	145591583	-	Pars_1371	-	hypothetical protein
1318	 58.08	0	1234604..1234894	+	96	145591584	-	Pars_1372	-	hypothetical protein
1319	 55.78	0	1235086..1235379	+	97	145591585	-	Pars_1373	-	paREP12
1320	 53.14	0	1235379..1235888	+	169	145591586	-	Pars_1374	-	hypothetical protein
1321	 54.44	0	1236105..1237985	-	626	145591587	-	Pars_1375	-	hypothetical protein
1322	 51.09	0	1238014..1238610	-	198	145591588	-	Pars_1376	-	hypothetical protein
1323	 49.06	-1	1239025..1239183	+	52	145591589	-	Pars_1377	-	hypothetical protein
1324	 57.92	0	1239486..1240754	-	422	145591590	-	Pars_1378	-	Pre-mRNA processing ribonucleoprotein, binding region
1325	 61.36	+1	1240776..1242602	-	608	145591591	-	Pars_1379	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1326	 55.10	0	1242642..1243151	-	169	145591592	-	Pars_1380	-	hypothetical protein
1327	 51.98	0	1243177..1245396	-	739	145591593	-	Pars_1381	-	hypothetical protein
1328	 58.22	0	1245525..1246211	+	228	145591594	-	Pars_1382	-	dimethyladenosine transferase
1329	 59.26	0	1246233..1247096	+	287	145591595	-	Pars_1383	-	ribonuclease Z
1330	 55.20	0	1247102..1247860	-	252	145591596	-	Pars_1384	-	methyltransferase type 11
1331	 57.88	0	1247857..1249416	-	519	145591597	-	Pars_1385	-	ATPase
1332	 56.23	0	1249553..1251517	+	654	145591598	-	Pars_1386	-	AMP-dependent synthetase and ligase
1333	 49.31	-1	1252300..1253163	+	287	145591599	-	Pars_1388	-	dihydrodipicolinate synthetase
1334	 55.30	0	1253581..1254486	-	301	145591600	-	Pars_1390	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
1335	 63.51	+1	1254688..1255416	+	242	145591601	-	Pars_1391	-	hypothetical protein
1336	 60.49	0	1255419..1255742	-	107	145591602	-	Pars_1392	-	DNA polymerase beta subunit
1337	 59.66	0	1255754..1256167	-	137	145591603	-	Pars_1393	-	HEPN domain-containing protein
1338	 58.21	0	1256194..1258227	-	677	145591604	-	Pars_1394	-	hypothetical protein
1339	 60.64	+1	1258452..1259546	-	364	145591605	-	Pars_1395	-	hypothetical protein
1340	 62.30	+1	1259713..1260651	-	312	145591606	-	Pars_1396	-	Fis family transcriptional regulator
1341	 52.02	0	1260655..1261296	-	213	145591607	-	Pars_1397	-	hypothetical protein
1342	 60.14	0	1261327..1261740	-	137	145591608	-	Pars_1398	-	hypothetical protein
1343	 58.72	0	1261730..1262308	-	192	145591609	-	Pars_1399	-	zinc finger SWIM domain-containing protein
1344	 58.61	0	1262580..1263647	+	355	145591610	-	Pars_1400	-	hypothetical protein
1345	 60.96	+1	1263622..1265145	-	507	145591611	-	Pars_1401	-	carbohydrate kinase, YjeF related protein
1346	 43.43	-2	1265188..1266663	-	491	145591612	-	Pars_1402	-	type I phosphodiesterase/nucleotide pyrophosphatase
1347	 49.40	-1	1266700..1266948	-	82	145591613	-	Pars_1403	-	hypothetical protein
1348	 61.02	+1	1267135..1268286	+	383	145591614	-	Pars_1404	-	aminotransferase class-III
1349	 56.47	0	1268283..1269371	-	362	145591615	-	Pars_1405	-	aminotransferase, class I and II
1350	 55.70	0	1269368..1269823	-	151	145591616	-	Pars_1406	-	vitamin K epoxide reductase
1351	 61.04	+1	1269930..1270427	+	165	145591617	-	Pars_1407	-	hypothetical protein
1352	 56.38	0	1270516..1271205	-	229	145591618	-	Pars_1408	-	paREP7
1353	 62.94	+1	1271253..1272056	+	267	145591619	-	Pars_1409	-	radical SAM domain-containing protein
1354	 64.16	+1	1272044..1272562	-	172	145591620	-	Pars_1410	-	paREP11
1355	 60.95	+1	1272845..1273159	+	104	145591621	-	Pars_1411	-	hypothetical protein
1356	 51.35	0	1273211..1273432	+	73	145591622	-	Pars_1412	-	hypothetical protein
1357	 62.36	+1	1275320..1275946	-	208	145591623	-	Pars_1415	-	phosphoribosylanthranilate isomerase
1358	 53.53	0	1275970..1277088	-	372	145591624	-	Pars_1416	-	hypothetical protein
1359	 57.81	0	1277233..1278666	+	477	145591625	-	Pars_1417	-	Ferritin, Dps family protein
1360	 62.85	+1	1278824..1280053	+	409	145591626	-	Pars_1418	-	tryptophan synthase subunit beta
1361	 62.38	+1	1280094..1281095	+	333	145591627	-	Pars_1419	-	anthranilate phosphoribosyltransferase
1362	 62.33	+1	1281092..1282360	+	422	145591628	-	Pars_1420	-	anthranilate synthase component I
1363	 61.14	+1	1282351..1282929	+	192	145591629	-	Pars_1421	-	anthranilate synthase component II
1364	 62.43	+1	1282931..1283638	+	235	145591630	trpA	Pars_1422	-	tryptophan synthase subunit alpha
1365	 58.68	0	1283732..1284946	-	404	145591631	-	Pars_1423	-	citrate transporter
1366	 57.86	0	1285038..1285457	+	139	145591632	-	Pars_1424	-	hypothetical protein
1367	 46.67	-1	1285486..1285650	+	54	145591633	-	Pars_1425	-	30S ribosomal protein S30e
1368	 55.82	0	1285654..1286796	+	380	145591634	-	Pars_1426	-	hypothetical protein
1369	 60.22	0	1286813..1287370	+	185	145591635	-	Pars_1427	-	thymidine kinase
1370	 52.21	0	1287367..1287864	-	165	145591636	-	Pars_1428	-	bacterio-opsin activator
1371	 49.85	0	1287970..1288296	+	108	145591637	-	Pars_1429	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1372	 55.67	0	1288517..1289425	+	302	145591638	-	Pars_1430	-	radical SAM domain-containing protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.