IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1229	 59.51	0	1159312..1160052	+	246	145591495	-	Pars_1281	-	hypothetical protein
1230	 55.52	0	1160075..1161043	+	322	145591496	-	Pars_1282	-	hypothetical protein
1231	 55.77	0	1161073..1162302	+	409	145591497	-	Pars_1283	-	periplasmic binding protein
1232	 61.75	+1	1162293..1163309	+	338	145591498	-	Pars_1284	-	transport system permease protein
1233	 57.39	0	1163303..1164046	+	247	145591499	-	Pars_1285	-	ABC transporter related
1234	 60.73	+1	1164413..1165624	+	403	145591500	-	Pars_1287	-	hydrogenase formation HypD protein
1235	 60.63	+1	1165627..1165974	+	115	145591501	-	Pars_1288	-	hypothetical protein
1236	 56.59	0	1166128..1166256	+	42	145591502	-	Pars_1289	-	hypothetical protein
1237	 60.44	0	1166403..1166996	+	197	145591503	-	Pars_1290	-	hypothetical protein
1238	 50.72	0	1167123..1167467	+	114	145591504	-	Pars_1291	-	hypothetical protein
1239	 56.33	0	1167838..1168737	+	299	145591505	-	Pars_1292	-	cobalamin (vitamin B12) biosynthesis CbiM protein
1240	 57.65	0	1168734..1169387	+	217	145591506	-	Pars_1293	-	hypothetical protein
1241	 56.33	0	1169372..1170019	+	215	145591507	-	Pars_1294	-	ABC transporter related
1242	 54.70	0	1169996..1170580	-	194	145591508	-	Pars_1295	-	hypothetical protein
1243	 47.79	-1	1170580..1170828	-	82	145591509	-	Pars_1296	-	hypothetical protein
1244	 54.39	0	1170821..1171333	-	170	145591510	-	Pars_1297	-	hydrogenase maturation protease
1245	 57.75	0	1171312..1173228	-	638	145591511	-	Pars_1298	-	nickel-dependent hydrogenase, large subunit
1246	 50.95	0	1173283..1174542	-	419	145591512	-	Pars_1299	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1247	 41.57	-2	1174597..1175361	-	254	145591513	-	Pars_1300	-	hypothetical protein
1248	 55.81	0	1175363..1176679	-	438	145591514	-	Pars_1301	-	nickel-dependent hydrogenase small subunit
1249	 50.89	0	1176660..1177274	-	204	145591515	-	Pars_1302	-	hypothetical protein
1250	 55.97	0	1177267..1177752	-	161	145591516	-	Pars_1303	-	hypothetical protein
1251	 44.88	-1	1177915..1178217	-	100	145591517	-	Pars_1304	-	hypothetical protein
1252	 48.46	-1	1178267..1178656	+	129	145591518	-	Pars_1305	-	CopG family transcriptional regulator
1253	 57.42	0	1178686..1179096	+	136	145591519	-	Pars_1306	-	hydrogenase expression/synthesis, HypA
1254	 60.43	0	1179093..1179749	+	218	145591520	-	Pars_1307	-	hypothetical protein
1255	 58.57	0	1179827..1181728	+	633	145591521	-	Pars_1308	-	AMP-dependent synthetase and ligase
1256	 57.35	0	1181788..1182828	+	346	145591522	-	Pars_1309	-	hydrogenase expression/formation protein HypE
1257	 57.99	0	1182822..1183409	+	195	145591523	-	Pars_1310	-	beta-lactamase fold-like Zn-dependent hydrolase
1258	 55.06	0	1184148..1184681	+	177	145591524	-	Pars_1311	-	THUMP domain-containing protein
1259	 60.68	+1	1184711..1185295	+	194	145591525	-	Pars_1312	-	hypothetical protein
1260	 58.69	0	1185269..1186171	-	300	145591526	-	Pars_1313	-	dihydropteroate synthase
1261	 48.57	-1	1186221..1186535	+	104	145591527	-	Pars_1314	-	hypothetical protein
1262	 59.07	0	1186556..1187806	+	416	145591528	-	Pars_1315	-	RNA modification protein
1263	 53.01	0	1187836..1188333	+	165	145591529	-	Pars_1316	-	PaREP1 domain-containing protein
1264	 58.09	0	1188330..1190042	-	570	145591530	-	Pars_1317	-	methionyl-tRNA synthetase
1265	 54.97	0	1190093..1190716	-	207	145591531	-	Pars_1318	-	hypothetical protein
1266	 53.70	0	1190719..1191435	-	238	145591532	-	Pars_1319	-	undecaprenyl diphosphate synthase
1267	 50.76	0	1191413..1191739	-	108	145591533	-	Pars_1320	-	methionyl-tRNA synthetase, beta subunit
1268	 55.81	0	1191763..1192158	-	131	145591534	-	Pars_1321	-	hypothetical protein
1269	 53.49	0	1192164..1194614	-	816	145591535	-	Pars_1322	-	hypothetical protein
1270	 55.31	0	1194683..1195492	+	269	145591536	-	Pars_1323	-	HAD family hydrolase
1271	 55.21	0	1195479..1196246	-	255	145591537	-	Pars_1324	-	hypothetical protein
1272	 53.99	0	1196243..1196455	-	70	145591538	-	Pars_1325	-	hypothetical protein
1273	 52.38	0	1196494..1196808	-	104	145591539	-	Pars_1326	-	hypothetical protein
1274	 51.49	0	1196856..1197995	+	379	145591540	-	Pars_1327	-	hypothetical protein
1275	 55.60	0	1198314..1199063	+	249	145591541	-	Pars_1328	-	extracellular solute-binding protein
1276	 52.15	0	1199048..1199488	+	146	145591542	-	Pars_1329	-	hypothetical protein
1277	 55.12	0	1199526..1200287	+	253	145591543	-	Pars_1330	-	NAD-dependent deacetylase
1278	 50.38	0	1200268..1200789	-	173	145591544	-	Pars_1331	-	hypothetical protein
1279	 49.05	-1	1200786..1201205	-	139	145591545	-	Pars_1332	-	signal-transduction protein
1280	 47.27	-1	1201228..1201557	-	109	145591546	-	Pars_1333	-	hypothetical protein
1281	 55.87	0	1201554..1201979	-	141	145591547	-	Pars_1334	-	hypothetical protein
1282	 40.58	-2	1201976..1202113	-	45	145591548	-	Pars_1335	-	hypothetical protein
1283	 43.66	-2	1202110..1202322	-	70	145591549	-	Pars_1336	-	hypothetical protein
1284	 53.86	0	1202581..1203267	+	228	145591550	-	Pars_1337	-	nucleotidyl transferase
1285	 56.28	0	1203257..1204969	+	570	145591551	gltX	Pars_1338	-	glutamyl-tRNA synthetase
1286	 56.55	0	1205088..1206095	+	335	145591552	-	Pars_1339	-	hypothetical protein
1287	 52.16	0	1206124..1206516	+	130	145591553	-	Pars_1340	-	hypothetical protein
1288	 53.37	0	1206458..1207081	-	207	145591554	-	Pars_1341	-	hypothetical protein
1289	 53.94	0	1207217..1208512	-	431	145591555	-	Pars_1342	-	asparaginyl-tRNA synthetase
1290	 50.60	0	1208515..1208763	-	82	145591556	-	Pars_1343	-	hypothetical protein
1291	 55.35	0	1208760..1209572	-	270	145591557	-	Pars_1344	-	6-phosphogluconate dehydrogenase, NAD-binding
1292	 58.87	0	1209575..1210651	+	358	145591558	-	Pars_1345	-	Sua5/YciO/YrdC/YwlC family protein
1293	 52.90	0	1210648..1211424	+	258	145591559	-	Pars_1346	-	methyltransferase type 11
1294	 52.63	0	1211454..1212308	+	284	145591560	-	Pars_1347	-	ribose-phosphate pyrophosphokinase
1295	 58.85	0	1212303..1213313	-	336	145591561	-	Pars_1348	-	histone deacetylase superfamily protein
1296	 43.59	-2	1213372..1213566	+	64	145591562	-	Pars_1349	-	hypothetical protein
1297	 53.05	0	1213544..1214182	-	212	145591563	-	Pars_1350	-	creatininase
1298	 53.30	0	1214302..1214967	+	221	145591564	-	Pars_1351	-	GTP cyclohydrolase IIA
1299	 53.04	0	1214964..1215638	+	224	145591565	-	Pars_1352	-	hypothetical protein
1300	 54.81	0	1215674..1216297	+	207	145591566	-	Pars_1353	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1301	 50.00	0	1216281..1216694	-	137	145591567	-	Pars_1354	-	hypothetical protein
1302	 55.71	0	1216748..1217824	+	358	145591568	-	Pars_1355	-	geranylgeranyl reductase
1303	 54.40	0	1217819..1218976	-	385	145591569	-	Pars_1356	-	nicotinate phosphoribosyltransferase
1304	 52.66	0	1219011..1220738	+	575	145591570	-	Pars_1357	-	DEAD_2 domain-containing protein
1305	 62.17	+1	1220722..1221210	-	162	145591571	-	Pars_1358	-	hypothetical protein
1306	 56.77	0	1221280..1223088	+	602	145591572	-	Pars_1359	-	DNA topoisomerase
1307	 57.13	0	1223081..1223992	+	303	145591573	-	Pars_1360	-	hypothetical protein
1308	 52.54	0	1224088..1225659	+	523	145591574	-	Pars_1361	-	hypothetical protein
1309	 52.96	0	1225783..1227117	-	444	145591575	-	Pars_1362	-	elongation factor 1-alpha
1310	 56.57	0	1227547..1227843	+	98	145591576	-	Pars_1363	-	ribosomal protein L34e
1311	 50.99	0	1227847..1228401	+	184	145591577	-	Pars_1364	-	cytidylate kinase
1312	 55.62	0	1228431..1229480	+	349	145591578	-	Pars_1365	-	putative glutamate synthase subunit beta
1313	 53.11	0	1229482..1230189	-	235	145591579	-	Pars_1366	-	fibrillarin
1314	 61.30	+1	1230616..1231566	-	316	145591580	-	Pars_1367	-	paREP2b
1315	 57.52	0	1231698..1232156	-	152	145591581	-	Pars_1368	-	hypothetical protein
1316	 49.04	-1	1233055..1233780	+	241	145591582	-	Pars_1370	-	DNA polymerase beta subunit
1317	 57.98	0	1233751..1234245	-	164	145591583	-	Pars_1371	-	hypothetical protein
1318	 58.08	0	1234604..1234894	+	96	145591584	-	Pars_1372	-	hypothetical protein
1319	 55.78	0	1235086..1235379	+	97	145591585	-	Pars_1373	-	paREP12
1320	 53.14	0	1235379..1235888	+	169	145591586	-	Pars_1374	-	hypothetical protein
1321	 54.44	0	1236105..1237985	-	626	145591587	-	Pars_1375	-	hypothetical protein
1322	 51.09	0	1238014..1238610	-	198	145591588	-	Pars_1376	-	hypothetical protein
1323	 49.06	-1	1239025..1239183	+	52	145591589	-	Pars_1377	-	hypothetical protein
1324	 57.92	0	1239486..1240754	-	422	145591590	-	Pars_1378	-	Pre-mRNA processing ribonucleoprotein, binding region
1325	 61.36	+1	1240776..1242602	-	608	145591591	-	Pars_1379	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1326	 55.10	0	1242642..1243151	-	169	145591592	-	Pars_1380	-	hypothetical protein
1327	 51.98	0	1243177..1245396	-	739	145591593	-	Pars_1381	-	hypothetical protein
1328	 58.22	0	1245525..1246211	+	228	145591594	-	Pars_1382	-	dimethyladenosine transferase
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.