IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1174	 51.41	0	1107229..1107477	-	82	145591440	-	Pars_1222	-	hypothetical protein
1175	 58.38	0	1108926..1110083	+	385	145591441	-	Pars_1224	-	sulfite reductase, dissimilatory-type beta subunit
1176	 56.04	0	1110080..1110559	+	159	145591442	-	Pars_1225	-	hypothetical protein
1177	 55.56	0	1110560..1110910	-	116	145591443	-	Pars_1226	-	DsrE family protein
1178	 54.17	0	1111031..1111366	+	111	145591444	-	Pars_1227	-	DsrC family protein
1179	 55.21	0	1111423..1112190	+	255	145591445	-	Pars_1228	-	nitrate reductase, gamma subunit
1180	 52.44	0	1112346..1113062	+	238	145591446	-	Pars_1229	-	hypothetical protein
1181	 48.74	-1	1113066..1113500	+	144	145591447	-	Pars_1230	-	hypothetical protein
1182	 55.94	0	1113524..1114045	+	173	145591448	-	Pars_1231	-	phosphodiesterase
1183	 61.46	+1	1114032..1114511	-	159	145591449	-	Pars_1232	-	hypothetical protein
1184	 52.25	0	1114984..1115850	-	288	145591450	-	Pars_1233	-	hypothetical protein
1185	 54.55	0	1115975..1116469	+	164	145591451	-	Pars_1234	-	adenylylsulfate reductase, beta subunit
1186	 60.32	0	1116471..1118360	+	629	145591452	-	Pars_1235	-	adenylylsulfate reductase
1187	 55.78	0	1118647..1119693	+	348	145591453	-	Pars_1236	-	hypothetical protein
1188	 55.10	0	1119706..1120068	+	120	145591454	-	Pars_1237	-	hypothetical protein
1189	 58.66	0	1121140..1121676	-	178	145591455	-	Pars_1239	-	ankyrin
1190	 59.30	0	1122075..1123445	+	456	145591456	sat	Pars_1240	-	sulfate adenylyltransferase
1191	 50.85	0	1123569..1123922	+	117	145591457	-	Pars_1241	-	hypothetical protein
1192	 56.09	0	1123976..1124410	+	144	145591458	-	Pars_1242	-	hypothetical protein
1193	 51.33	0	1124410..1124709	+	99	145591459	-	Pars_1243	-	hypothetical protein
1194	 58.82	0	1124706..1126031	-	441	145591460	-	Pars_1244	-	hypothetical protein
1195	 53.01	0	1126055..1126303	-	82	145591461	-	Pars_1245	-	4A-hydroxytetrahydrobiopterin dehydratase
1196	 39.67	-2	1127417..1127716	+	99	145591462	-	Pars_1248	-	hypothetical protein
1197	 57.41	0	1127804..1128700	-	298	145591463	-	Pars_1249	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1198	 58.50	0	1128697..1130337	-	546	145591464	-	Pars_1250	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1199	 59.57	0	1130462..1131730	+	422	145591465	-	Pars_1251	-	major facilitator transporter
1200	 54.69	0	1131727..1132110	-	127	145591466	-	Pars_1252	-	hypothetical protein
1201	 57.90	0	1132100..1133023	-	307	145591467	-	Pars_1253	-	hypothetical protein
1202	 60.93	+1	1133039..1134031	+	330	145591468	-	Pars_1254	-	putative RNA methylase
1203	 54.78	0	1134028..1135524	-	498	145591469	-	Pars_1255	-	restriction endonuclease
1204	 59.10	0	1135642..1136289	-	215	145591470	-	Pars_1256	-	hypothetical protein
1205	 59.08	0	1136303..1136908	-	201	145591471	-	Pars_1257	-	isochorismatase hydrolase
1206	 58.01	0	1136961..1137341	+	126	145591472	-	Pars_1258	-	putative endoribonuclease L-PSP
1207	 57.47	0	1137418..1137678	+	86	145591473	-	Pars_1259	-	hypothetical protein
1208	 55.28	0	1137657..1138262	+	201	145591474	-	Pars_1260	-	hypothetical protein
1209	 45.50	-1	1138278..1138499	+	73	145591475	-	Pars_1261	-	hypothetical protein
1210	 50.69	0	1138483..1138770	+	95	145591476	-	Pars_1262	-	hypothetical protein
1211	 42.72	-2	1139322..1139843	+	173	145591477	-	Pars_1263	-	hypothetical protein
1212	 44.49	-1	1139854..1140516	+	220	145591478	-	Pars_1264	-	hypothetical protein
1213	 59.36	0	1141324..1141542	+	72	145591479	-	Pars_1265	-	paREP2b
1214	 55.86	0	1142624..1143280	+	218	145591480	-	Pars_1266	-	hypothetical protein
1215	 54.87	0	1143318..1143800	-	160	145591481	-	Pars_1267	-	PaREP1 domain-containing protein
1216	 60.06	0	1143852..1144184	-	110	145591482	-	Pars_1268	-	DNA polymerase beta subunit
1217	 55.69	0	1144177..1144659	-	160	145591483	-	Pars_1269	-	HEPN domain-containing protein
1218	 54.22	0	1144822..1145046	+	74	145591484	-	Pars_1270	-	paREP6
1219	 57.55	0	1145120..1145536	+	138	145591485	-	Pars_1271	-	hypothetical protein
1220	 52.43	0	1146365..1146961	-	198	145591486	-	Pars_1272	-	hypothetical protein
1221	 59.03	0	1147051..1150506	+	1151	145591487	-	Pars_1273	-	hypothetical protein
1222	 55.33	0	1150744..1152348	+	534	145591488	-	Pars_1274	-	TrkA domain-containing protein
1223	 60.66	+1	1152406..1152888	-	160	145591489	-	Pars_1275	-	hypothetical protein
1224	 55.78	0	1153129..1153863	+	244	145591490	-	Pars_1276	-	hypothetical protein
1225	 50.70	0	1154036..1154248	+	70	145591491	-	Pars_1277	-	hypothetical protein
1226	 64.88	+1	1154367..1155149	-	260	145591492	-	Pars_1278	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1227	 52.49	0	1155907..1156668	-	253	145591493	-	Pars_1279	-	hypothetical protein
1228	 59.44	0	1156982..1159222	-	746	145591494	-	Pars_1280	-	(NiFe) hydrogenase maturation protein HypF
1229	 59.51	0	1159312..1160052	+	246	145591495	-	Pars_1281	-	hypothetical protein
1230	 55.52	0	1160075..1161043	+	322	145591496	-	Pars_1282	-	hypothetical protein
1231	 55.77	0	1161073..1162302	+	409	145591497	-	Pars_1283	-	periplasmic binding protein
1232	 61.75	+1	1162293..1163309	+	338	145591498	-	Pars_1284	-	transport system permease protein
1233	 57.39	0	1163303..1164046	+	247	145591499	-	Pars_1285	-	ABC transporter related
1234	 60.73	+1	1164413..1165624	+	403	145591500	-	Pars_1287	-	hydrogenase formation HypD protein
1235	 60.63	+1	1165627..1165974	+	115	145591501	-	Pars_1288	-	hypothetical protein
1236	 56.59	0	1166128..1166256	+	42	145591502	-	Pars_1289	-	hypothetical protein
1237	 60.44	0	1166403..1166996	+	197	145591503	-	Pars_1290	-	hypothetical protein
1238	 50.72	0	1167123..1167467	+	114	145591504	-	Pars_1291	-	hypothetical protein
1239	 56.33	0	1167838..1168737	+	299	145591505	-	Pars_1292	-	cobalamin (vitamin B12) biosynthesis CbiM protein
1240	 57.65	0	1168734..1169387	+	217	145591506	-	Pars_1293	-	hypothetical protein
1241	 56.33	0	1169372..1170019	+	215	145591507	-	Pars_1294	-	ABC transporter related
1242	 54.70	0	1169996..1170580	-	194	145591508	-	Pars_1295	-	hypothetical protein
1243	 47.79	-1	1170580..1170828	-	82	145591509	-	Pars_1296	-	hypothetical protein
1244	 54.39	0	1170821..1171333	-	170	145591510	-	Pars_1297	-	hydrogenase maturation protease
1245	 57.75	0	1171312..1173228	-	638	145591511	-	Pars_1298	-	nickel-dependent hydrogenase, large subunit
1246	 50.95	0	1173283..1174542	-	419	145591512	-	Pars_1299	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1247	 41.57	-2	1174597..1175361	-	254	145591513	-	Pars_1300	-	hypothetical protein
1248	 55.81	0	1175363..1176679	-	438	145591514	-	Pars_1301	-	nickel-dependent hydrogenase small subunit
1249	 50.89	0	1176660..1177274	-	204	145591515	-	Pars_1302	-	hypothetical protein
1250	 55.97	0	1177267..1177752	-	161	145591516	-	Pars_1303	-	hypothetical protein
1251	 44.88	-1	1177915..1178217	-	100	145591517	-	Pars_1304	-	hypothetical protein
1252	 48.46	-1	1178267..1178656	+	129	145591518	-	Pars_1305	-	CopG family transcriptional regulator
1253	 57.42	0	1178686..1179096	+	136	145591519	-	Pars_1306	-	hydrogenase expression/synthesis, HypA
1254	 60.43	0	1179093..1179749	+	218	145591520	-	Pars_1307	-	hypothetical protein
1255	 58.57	0	1179827..1181728	+	633	145591521	-	Pars_1308	-	AMP-dependent synthetase and ligase
1256	 57.35	0	1181788..1182828	+	346	145591522	-	Pars_1309	-	hydrogenase expression/formation protein HypE
1257	 57.99	0	1182822..1183409	+	195	145591523	-	Pars_1310	-	beta-lactamase fold-like Zn-dependent hydrolase
1258	 55.06	0	1184148..1184681	+	177	145591524	-	Pars_1311	-	THUMP domain-containing protein
1259	 60.68	+1	1184711..1185295	+	194	145591525	-	Pars_1312	-	hypothetical protein
1260	 58.69	0	1185269..1186171	-	300	145591526	-	Pars_1313	-	dihydropteroate synthase
1261	 48.57	-1	1186221..1186535	+	104	145591527	-	Pars_1314	-	hypothetical protein
1262	 59.07	0	1186556..1187806	+	416	145591528	-	Pars_1315	-	RNA modification protein
1263	 53.01	0	1187836..1188333	+	165	145591529	-	Pars_1316	-	PaREP1 domain-containing protein
1264	 58.09	0	1188330..1190042	-	570	145591530	-	Pars_1317	-	methionyl-tRNA synthetase
1265	 54.97	0	1190093..1190716	-	207	145591531	-	Pars_1318	-	hypothetical protein
1266	 53.70	0	1190719..1191435	-	238	145591532	-	Pars_1319	-	undecaprenyl diphosphate synthase
1267	 50.76	0	1191413..1191739	-	108	145591533	-	Pars_1320	-	methionyl-tRNA synthetase, beta subunit
1268	 55.81	0	1191763..1192158	-	131	145591534	-	Pars_1321	-	hypothetical protein
1269	 53.49	0	1192164..1194614	-	816	145591535	-	Pars_1322	-	hypothetical protein
1270	 55.31	0	1194683..1195492	+	269	145591536	-	Pars_1323	-	HAD family hydrolase
1271	 55.21	0	1195479..1196246	-	255	145591537	-	Pars_1324	-	hypothetical protein
1272	 53.99	0	1196243..1196455	-	70	145591538	-	Pars_1325	-	hypothetical protein
1273	 52.38	0	1196494..1196808	-	104	145591539	-	Pars_1326	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.