IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1125	 60.63	+1	1058870..1059913	-	347	145591391	-	Pars_1170	-	ABC transporter related
1126	 61.97	+1	1059986..1061221	+	411	145591392	-	Pars_1171	-	translation initiation factor IF-2 subunit gamma
1127	 58.26	0	1061282..1061638	+	118	145591393	-	Pars_1172	-	hypothetical protein
1128	 62.34	+1	1061847..1062701	-	284	145591394	-	Pars_1173	-	inner-membrane translocator
1129	 63.03	+1	1062692..1063654	-	320	145591395	-	Pars_1174	-	inner-membrane translocator
1130	 58.87	0	1063651..1065060	-	469	145591396	-	Pars_1175	-	ABC transporter related
1131	 57.70	0	1065061..1066353	-	430	145591397	-	Pars_1176	-	basic membrane lipoprotein
1132	 62.34	+1	1067114..1068337	-	407	145591398	-	Pars_1177	-	ATPase
1133	 53.01	0	1068653..1068901	+	82	145591399	-	Pars_1178	-	hypothetical protein
1134	 52.08	0	1068949..1069332	+	127	145591400	-	Pars_1179	-	hypothetical protein
1135	 55.71	0	1069434..1070081	+	215	145591401	-	Pars_1180	-	hypothetical protein
1136	 53.23	0	1070424..1070624	+	66	145591402	-	Pars_1181	-	hypothetical protein
1137	 57.07	0	1070963..1071337	-	124	145591403	-	Pars_1182	-	PaREP1 domain-containing protein
1138	 61.19	+1	1071731..1072369	-	212	145591404	-	Pars_1183	-	lipoate-protein ligase B
1139	 61.84	+1	1072366..1073256	-	296	145591405	-	Pars_1184	-	lipoyl synthase
1140	 64.38	+1	1074602..1075828	-	408	145591406	-	Pars_1187	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1141	 64.50	+1	1075825..1076793	-	322	145591407	-	Pars_1188	-	transketolase, central region
1142	 58.76	0	1076790..1077902	-	370	145591408	-	Pars_1189	-	pyruvate dehydrogenase (acetyl-transferring)
1143	 63.32	+1	1078512..1079318	-	268	145591409	-	Pars_1190	-	hypothetical protein
1144	 60.67	+1	1079318..1080217	-	299	145591410	-	Pars_1191	-	pirin domain-containing protein
1145	 59.08	0	1080273..1080707	-	144	145591411	-	Pars_1192	-	hypothetical protein
1146	 60.63	+1	1080818..1082191	-	457	145591412	-	Pars_1193	-	ATPase
1147	 66.27	+2	1082219..1082716	-	165	145591413	-	Pars_1194	-	hypothetical protein
1148	 64.16	+1	1082713..1083630	-	305	145591414	-	Pars_1195	-	hypothetical protein
1149	 58.31	0	1083680..1084588	+	302	145591415	-	Pars_1196	-	ATPase
1150	 63.87	+1	1084579..1085472	-	297	145591416	-	Pars_1197	-	hypothetical protein
1151	 62.67	+1	1085469..1086944	-	491	145591417	-	Pars_1198	-	transglutaminase domain-containing protein
1152	 45.57	-1	1087623..1087859	-	78	145591418	-	Pars_1200	-	hypothetical protein
1153	 54.58	0	1087990..1088808	-	272	145591419	-	Pars_1201	-	ZIP family zinc transporter
1154	 54.40	0	1089269..1089700	-	143	145591420	-	Pars_1202	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1155	 55.14	0	1089745..1090230	-	161	145591421	-	Pars_1203	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1156	 62.49	+1	1090341..1092326	-	661	145591422	-	Pars_1204	-	hypothetical protein
1157	 62.65	+1	1092675..1094069	-	464	145591423	-	Pars_1205	-	mercuric reductase
1158	 54.39	0	1094082..1094252	-	56	145591424	-	Pars_1206	-	YHS domain-containing protein
1159	 58.27	0	1094281..1094649	-	122	145591425	-	Pars_1207	-	hypothetical protein
1160	 59.73	0	1094646..1096346	-	566	145591426	-	Pars_1208	-	acylphosphatase
1161	 59.84	0	1096343..1096591	-	82	145591427	-	Pars_1209	-	SirA family protein
1162	 53.07	0	1096716..1096943	+	75	145591428	-	Pars_1210	-	SirA family protein
1163	 53.29	0	1096961..1097446	-	161	145591429	-	Pars_1211	-	hypothetical protein
1164	 56.45	0	1097448..1098563	-	371	145591430	-	Pars_1212	-	sulfite reductase, dissimilatory-type beta subunit
1165	 57.47	0	1098560..1099810	-	416	145591431	-	Pars_1213	-	hydrogensulfite reductase
1166	 56.62	0	1099825..1100670	+	281	145591432	-	Pars_1214	-	uroporphyrinogen III synthase HEM4
1167	 62.00	+1	1100650..1101378	-	242	145591433	-	Pars_1215	-	uroporphyrinogen-III synthase (HemD), conjectural
1168	 51.08	0	1101417..1101647	+	76	145591434	-	Pars_1216	-	SirA family protein
1169	 59.41	0	1101882..1102322	-	146	145591435	-	Pars_1217	-	hypothetical protein
1170	 56.58	0	1102319..1103458	-	379	145591436	-	Pars_1218	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1171	 54.79	0	1103535..1105007	-	490	145591437	-	Pars_1219	-	hypothetical protein
1172	 59.75	0	1105255..1106598	+	447	145591438	-	Pars_1220	-	cobyrinic acid a,c-diamide synthase
1173	 54.79	0	1106583..1107239	+	218	145591439	-	Pars_1221	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1174	 51.41	0	1107229..1107477	-	82	145591440	-	Pars_1222	-	hypothetical protein
1175	 58.38	0	1108926..1110083	+	385	145591441	-	Pars_1224	-	sulfite reductase, dissimilatory-type beta subunit
1176	 56.04	0	1110080..1110559	+	159	145591442	-	Pars_1225	-	hypothetical protein
1177	 55.56	0	1110560..1110910	-	116	145591443	-	Pars_1226	-	DsrE family protein
1178	 54.17	0	1111031..1111366	+	111	145591444	-	Pars_1227	-	DsrC family protein
1179	 55.21	0	1111423..1112190	+	255	145591445	-	Pars_1228	-	nitrate reductase, gamma subunit
1180	 52.44	0	1112346..1113062	+	238	145591446	-	Pars_1229	-	hypothetical protein
1181	 48.74	-1	1113066..1113500	+	144	145591447	-	Pars_1230	-	hypothetical protein
1182	 55.94	0	1113524..1114045	+	173	145591448	-	Pars_1231	-	phosphodiesterase
1183	 61.46	+1	1114032..1114511	-	159	145591449	-	Pars_1232	-	hypothetical protein
1184	 52.25	0	1114984..1115850	-	288	145591450	-	Pars_1233	-	hypothetical protein
1185	 54.55	0	1115975..1116469	+	164	145591451	-	Pars_1234	-	adenylylsulfate reductase, beta subunit
1186	 60.32	0	1116471..1118360	+	629	145591452	-	Pars_1235	-	adenylylsulfate reductase
1187	 55.78	0	1118647..1119693	+	348	145591453	-	Pars_1236	-	hypothetical protein
1188	 55.10	0	1119706..1120068	+	120	145591454	-	Pars_1237	-	hypothetical protein
1189	 58.66	0	1121140..1121676	-	178	145591455	-	Pars_1239	-	ankyrin
1190	 59.30	0	1122075..1123445	+	456	145591456	sat	Pars_1240	-	sulfate adenylyltransferase
1191	 50.85	0	1123569..1123922	+	117	145591457	-	Pars_1241	-	hypothetical protein
1192	 56.09	0	1123976..1124410	+	144	145591458	-	Pars_1242	-	hypothetical protein
1193	 51.33	0	1124410..1124709	+	99	145591459	-	Pars_1243	-	hypothetical protein
1194	 58.82	0	1124706..1126031	-	441	145591460	-	Pars_1244	-	hypothetical protein
1195	 53.01	0	1126055..1126303	-	82	145591461	-	Pars_1245	-	4A-hydroxytetrahydrobiopterin dehydratase
1196	 39.67	-2	1127417..1127716	+	99	145591462	-	Pars_1248	-	hypothetical protein
1197	 57.41	0	1127804..1128700	-	298	145591463	-	Pars_1249	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1198	 58.50	0	1128697..1130337	-	546	145591464	-	Pars_1250	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1199	 59.57	0	1130462..1131730	+	422	145591465	-	Pars_1251	-	major facilitator transporter
1200	 54.69	0	1131727..1132110	-	127	145591466	-	Pars_1252	-	hypothetical protein
1201	 57.90	0	1132100..1133023	-	307	145591467	-	Pars_1253	-	hypothetical protein
1202	 60.93	+1	1133039..1134031	+	330	145591468	-	Pars_1254	-	putative RNA methylase
1203	 54.78	0	1134028..1135524	-	498	145591469	-	Pars_1255	-	restriction endonuclease
1204	 59.10	0	1135642..1136289	-	215	145591470	-	Pars_1256	-	hypothetical protein
1205	 59.08	0	1136303..1136908	-	201	145591471	-	Pars_1257	-	isochorismatase hydrolase
1206	 58.01	0	1136961..1137341	+	126	145591472	-	Pars_1258	-	putative endoribonuclease L-PSP
1207	 57.47	0	1137418..1137678	+	86	145591473	-	Pars_1259	-	hypothetical protein
1208	 55.28	0	1137657..1138262	+	201	145591474	-	Pars_1260	-	hypothetical protein
1209	 45.50	-1	1138278..1138499	+	73	145591475	-	Pars_1261	-	hypothetical protein
1210	 50.69	0	1138483..1138770	+	95	145591476	-	Pars_1262	-	hypothetical protein
1211	 42.72	-2	1139322..1139843	+	173	145591477	-	Pars_1263	-	hypothetical protein
1212	 44.49	-1	1139854..1140516	+	220	145591478	-	Pars_1264	-	hypothetical protein
1213	 59.36	0	1141324..1141542	+	72	145591479	-	Pars_1265	-	paREP2b
1214	 55.86	0	1142624..1143280	+	218	145591480	-	Pars_1266	-	hypothetical protein
1215	 54.87	0	1143318..1143800	-	160	145591481	-	Pars_1267	-	PaREP1 domain-containing protein
1216	 60.06	0	1143852..1144184	-	110	145591482	-	Pars_1268	-	DNA polymerase beta subunit
1217	 55.69	0	1144177..1144659	-	160	145591483	-	Pars_1269	-	HEPN domain-containing protein
1218	 54.22	0	1144822..1145046	+	74	145591484	-	Pars_1270	-	paREP6
1219	 57.55	0	1145120..1145536	+	138	145591485	-	Pars_1271	-	hypothetical protein
1220	 52.43	0	1146365..1146961	-	198	145591486	-	Pars_1272	-	hypothetical protein
1221	 59.03	0	1147051..1150506	+	1151	145591487	-	Pars_1273	-	hypothetical protein
1222	 55.33	0	1150744..1152348	+	534	145591488	-	Pars_1274	-	TrkA domain-containing protein
1223	 60.66	+1	1152406..1152888	-	160	145591489	-	Pars_1275	-	hypothetical protein
1224	 55.78	0	1153129..1153863	+	244	145591490	-	Pars_1276	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.