IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1056	 52.48	0	977659..978222	-	187	145591322	-	Pars_1094	-	hypothetical protein
1057	 59.51	0	978527..979015	+	162	145591323	-	Pars_1095	-	PaREP1 domain-containing protein
1058	 65.02	+1	978993..979961	-	322	145591324	-	Pars_1096	-	tRNA (guanine-N1-)-methyltransferase
1059	 54.71	0	980681..981742	+	353	145591325	-	Pars_1097	-	asparagine synthetase A
1060	 55.68	0	981999..983300	+	433	145591326	-	Pars_1098	-	glutamate--ammonia ligase
1061	 50.14	0	983300..983995	+	231	145591327	-	Pars_1099	-	glutamine amidotransferase, class-II
1062	 54.03	0	984197..985858	+	553	145591328	-	Pars_1100	-	glutamate synthase alpha subunit
1063	 60.29	0	986269..988323	+	684	145591329	-	Pars_1101	-	glutamate synthase (NADPH)
1064	 58.10	0	988481..988900	+	139	145591330	-	Pars_1102	-	hypothetical protein
1065	 61.19	+1	988878..989297	+	139	145591331	-	Pars_1103	-	hypothetical protein
1066	 56.53	0	989805..990554	-	249	145591332	-	Pars_1104	-	beta-lactamase domain-containing protein
1067	 56.46	0	990554..991513	-	319	145591333	-	Pars_1105	-	ABC transporter related
1068	 54.14	0	991515..993206	-	563	145591334	-	Pars_1106	-	binding-protein-dependent transport systems inner membrane component
1069	 53.78	0	993203..994708	-	501	145591335	-	Pars_1107	-	extracellular solute-binding protein
1070	 64.55	+1	994887..996491	-	534	145591336	-	Pars_1108	-	AAA ATPase
1071	 66.93	+2	996488..997258	-	256	145591337	-	Pars_1109	-	CRISPR-associated protein APE2256 family
1072	 69.81	+2	997275..997814	-	179	145591338	-	Pars_1110	-	hypothetical protein
1073	 65.24	+1	997811..998860	-	349	145591339	-	Pars_1111	-	hypothetical protein
1074	 59.51	0	1002488..1003060	-	190	145591340	-	Pars_1112	-	hypothetical protein
1075	 56.57	0	1003497..1004348	-	283	145591341	-	Pars_1113	-	hypothetical protein
1076	 65.22	+1	1004361..1005053	-	230	145591342	-	Pars_1114	-	CRISPR-associated RAMP Cmr6 family protein
1077	 68.63	+2	1005050..1006117	-	355	145591343	-	Pars_1115	-	CRISPR-associated RAMP Cmr1 family protein
1078	 57.98	0	1006114..1006539	-	141	145591344	-	Pars_1116	-	CRISPR-associated Cmr5 family protein
1079	 61.49	+1	1006536..1007462	-	308	145591345	-	Pars_1117	-	CRISPR-associated RAMP Cmr4 family protein family protein
1080	 65.49	+1	1007542..1010178	+	878	145591346	-	Pars_1118	-	CRISPR-associated RAMP Crm2 family protein
1081	 66.91	+2	1010175..1010990	+	271	145591347	-	Pars_1119	-	hypothetical protein
1082	 61.14	+1	1010987..1012162	+	391	145591348	-	Pars_1120	-	hypothetical protein
1083	 65.97	+2	1018991..1019563	-	190	145591349	-	Pars_1121	-	CRISPR-associated Cas4 family protein
1084	 60.87	+1	1019547..1019822	-	91	145591350	-	Pars_1122	-	CRISPR-associated Cas2 family protein
1085	 67.01	+2	1019813..1020697	-	294	145591351	-	Pars_1123	-	CRISPR-associated Cas1 family protein
1086	 67.61	+2	1020678..1021526	-	282	145591352	-	Pars_1124	-	CRISPR-associated RAMP Csa1 family protein
1087	 64.90	+1	1021605..1022225	+	206	145591353	-	Pars_1125	-	transcriptional regulator, TrmB
1088	 55.65	0	1022275..1022610	+	111	145591354	-	Pars_1126	-	hypothetical protein
1089	 56.84	0	1022612..1023547	+	311	145591355	-	Pars_1127	-	CRISPR-associated autoregulator DevR family protein protein
1090	 57.58	0	1023547..1024437	+	296	145591356	-	Pars_1128	-	CRISPR-associated Cas5 family protein
1091	 54.47	0	1024424..1025317	+	297	145591357	-	Pars_1129	-	hypothetical protein
1092	 58.42	0	1025314..1026768	+	484	145591358	-	Pars_1130	-	CRISPR-associated helicase Cas3
1093	 59.49	0	1026761..1027429	+	222	145591359	-	Pars_1131	-	CRISPR-associated HD domain-containing protein
1094	 56.10	0	1027932..1028423	+	163	145591360	-	Pars_1132	-	PaREP1 domain-containing protein
1095	 66.67	+2	1028634..1029512	+	292	145591361	-	Pars_1133	-	CRISPR-associated Cas family protein
1096	 61.54	+1	1029522..1030712	-	396	145591362	-	Pars_1134	-	CRISPR-associated DxTHG family protein
1097	 63.00	+1	1030786..1031112	+	108	145591363	-	Pars_1135	-	hypothetical protein
1098	 61.44	+1	1031481..1031939	+	152	145591364	-	Pars_1136	-	HEPN domain-containing protein
1099	 57.76	0	1031896..1032333	+	145	145591365	-	Pars_1137	-	DNA polymerase beta subunit
1100	 63.79	+1	1033680..1034027	+	115	145591366	-	Pars_1140	-	hypothetical protein
1101	 58.71	0	1034133..1034396	+	87	145591367	-	Pars_1141	-	hypothetical protein
1102	 52.29	0	1035037..1035933	+	298	145591368	-	Pars_1142	-	manganese containing catalase
1103	 59.02	0	1036041..1036406	-	121	145591369	-	Pars_1143	-	hypothetical protein
1104	 63.30	+1	1036896..1037162	-	88	145591370	-	Pars_1145	-	hypothetical protein
1105	 65.45	+1	1038063..1038881	-	272	145591371	-	Pars_1147	-	CRISPR-associated RAMP Csa1 family protein
1106	 53.54	0	1039567..1040229	-	220	145591372	-	Pars_1148	-	hypothetical protein
1107	 53.26	0	1040400..1040675	-	91	145591373	-	Pars_1149	-	hypothetical protein
1108	 59.87	0	1041463..1042227	+	254	145591374	-	Pars_1150	-	hypothetical protein
1109	 67.36	+2	1042501..1043079	-	192	145591375	-	Pars_1151	-	hypothetical protein
1110	 57.64	0	1043783..1044070	+	95	145591376	-	Pars_1153	-	hypothetical protein
1111	 59.46	0	1044021..1044464	-	147	145591377	-	Pars_1154	-	DNA polymerase beta subunit
1112	 58.22	0	1045513..1045962	+	149	145591378	-	Pars_1156	-	hypothetical protein
1113	 59.86	0	1046230..1046523	+	97	145591379	-	Pars_1158	-	hypothetical protein
1114	 50.71	0	1046813..1047232	+	139	145591380	-	Pars_1159	-	hypothetical protein
1115	 56.54	0	1047462..1047935	+	157	145591381	-	Pars_1160	-	PaREP1 domain-containing protein
1116	 62.57	+1	1048009..1048521	-	170	145591382	-	Pars_1161	-	CRISPR-associated RAMP Cmr6 family protein
1117	 62.04	+1	1049039..1049557	+	172	145591383	-	Pars_1162	-	hypothetical protein
1118	 62.26	+1	1049559..1049921	+	120	145591384	-	Pars_1163	-	hypothetical protein
1119	 61.69	+1	1049932..1051839	-	635	145591385	-	Pars_1164	-	aldehyde ferredoxin oxidoreductase
1120	 53.51	0	1051906..1052133	+	75	145591386	-	Pars_1165	-	hypothetical protein
1121	 59.97	0	1052138..1054063	-	641	145591387	-	Pars_1166	-	metallophosphoesterase
1122	 58.56	0	1054060..1055379	-	439	145591388	-	Pars_1167	-	hypothetical protein
1123	 56.93	0	1055509..1057059	+	516	145591389	-	Pars_1168	-	extracellular solute-binding protein
1124	 57.16	0	1057065..1058873	-	602	145591390	-	Pars_1169	-	binding-protein-dependent transport systems inner membrane component
1125	 60.63	+1	1058870..1059913	-	347	145591391	-	Pars_1170	-	ABC transporter related
1126	 61.97	+1	1059986..1061221	+	411	145591392	-	Pars_1171	-	translation initiation factor IF-2 subunit gamma
1127	 58.26	0	1061282..1061638	+	118	145591393	-	Pars_1172	-	hypothetical protein
1128	 62.34	+1	1061847..1062701	-	284	145591394	-	Pars_1173	-	inner-membrane translocator
1129	 63.03	+1	1062692..1063654	-	320	145591395	-	Pars_1174	-	inner-membrane translocator
1130	 58.87	0	1063651..1065060	-	469	145591396	-	Pars_1175	-	ABC transporter related
1131	 57.70	0	1065061..1066353	-	430	145591397	-	Pars_1176	-	basic membrane lipoprotein
1132	 62.34	+1	1067114..1068337	-	407	145591398	-	Pars_1177	-	ATPase
1133	 53.01	0	1068653..1068901	+	82	145591399	-	Pars_1178	-	hypothetical protein
1134	 52.08	0	1068949..1069332	+	127	145591400	-	Pars_1179	-	hypothetical protein
1135	 55.71	0	1069434..1070081	+	215	145591401	-	Pars_1180	-	hypothetical protein
1136	 53.23	0	1070424..1070624	+	66	145591402	-	Pars_1181	-	hypothetical protein
1137	 57.07	0	1070963..1071337	-	124	145591403	-	Pars_1182	-	PaREP1 domain-containing protein
1138	 61.19	+1	1071731..1072369	-	212	145591404	-	Pars_1183	-	lipoate-protein ligase B
1139	 61.84	+1	1072366..1073256	-	296	145591405	-	Pars_1184	-	lipoyl synthase
1140	 64.38	+1	1074602..1075828	-	408	145591406	-	Pars_1187	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1141	 64.50	+1	1075825..1076793	-	322	145591407	-	Pars_1188	-	transketolase, central region
1142	 58.76	0	1076790..1077902	-	370	145591408	-	Pars_1189	-	pyruvate dehydrogenase (acetyl-transferring)
1143	 63.32	+1	1078512..1079318	-	268	145591409	-	Pars_1190	-	hypothetical protein
1144	 60.67	+1	1079318..1080217	-	299	145591410	-	Pars_1191	-	pirin domain-containing protein
1145	 59.08	0	1080273..1080707	-	144	145591411	-	Pars_1192	-	hypothetical protein
1146	 60.63	+1	1080818..1082191	-	457	145591412	-	Pars_1193	-	ATPase
1147	 66.27	+2	1082219..1082716	-	165	145591413	-	Pars_1194	-	hypothetical protein
1148	 64.16	+1	1082713..1083630	-	305	145591414	-	Pars_1195	-	hypothetical protein
1149	 58.31	0	1083680..1084588	+	302	145591415	-	Pars_1196	-	ATPase
1150	 63.87	+1	1084579..1085472	-	297	145591416	-	Pars_1197	-	hypothetical protein
1151	 62.67	+1	1085469..1086944	-	491	145591417	-	Pars_1198	-	transglutaminase domain-containing protein
1152	 45.57	-1	1087623..1087859	-	78	145591418	-	Pars_1200	-	hypothetical protein
1153	 54.58	0	1087990..1088808	-	272	145591419	-	Pars_1201	-	ZIP family zinc transporter
1154	 54.40	0	1089269..1089700	-	143	145591420	-	Pars_1202	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1155	 55.14	0	1089745..1090230	-	161	145591421	-	Pars_1203	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.