IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.13 STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1008	 57.80	0	931861..932796	+	311	145591274	-	Pars_1046	-	aminotransferase, class I and II
1009	 54.87	0	932954..933589	+	211	145591275	-	Pars_1047	-	RNA 2'-phosphotransferase-like protein
1010	 61.57	+1	933883..934746	+	287	145591276	-	Pars_1048	-	Fis family transcriptional regulator
1011	 54.33	0	934753..935052	-	99	145591277	-	Pars_1049	-	PilT domain-containing protein
1012	 56.03	0	935136..935276	-	46	145591278	-	Pars_1050	-	hypothetical protein
1013	 57.12	0	935435..936010	+	191	145591279	-	Pars_1051	-	hypothetical protein
1014	 64.40	+1	935932..937209	-	425	145591280	-	Pars_1052	-	hypothetical protein
1015	 59.22	0	937187..938758	-	523	145591281	-	Pars_1053	-	ATPase
1016	 56.78	0	938933..939640	+	235	145591282	-	Pars_1054	-	hypothetical protein
1017	 62.03	+1	940044..940928	+	294	145591283	-	Pars_1055	-	hypothetical protein
1018	 63.84	+1	940944..941864	+	306	145591284	-	Pars_1056	-	hypothetical protein
1019	 51.55	0	942051..942308	-	85	145591285	-	Pars_1057	-	hypothetical protein
1020	 52.67	0	942286..942828	-	180	145591286	-	Pars_1058	-	hypothetical protein
1021	 57.71	0	942836..944041	-	401	145591287	-	Pars_1059	-	hypothetical protein
1022	 60.46	0	944121..946229	+	702	145591288	-	Pars_1060	-	hypothetical protein
1023	 59.58	0	946226..946945	+	239	145591289	-	Pars_1061	-	ABC transporter related
1024	 49.70	-1	947136..947465	-	109	145591290	-	Pars_1062	-	hypothetical protein
1025	 62.90	+1	948030..948878	+	282	145591291	-	Pars_1063	-	hypothetical protein
1026	 62.37	+1	948871..949965	+	364	145591292	-	Pars_1064	-	radical SAM domain-containing protein
1027	 58.58	0	950166..950573	-	135	145591293	-	Pars_1065	-	PilT domain-containing protein
1028	 55.56	0	950557..950790	-	77	145591294	-	Pars_1066	-	hypothetical protein
1029	 59.02	0	951132..951458	-	108	145591295	-	Pars_1067	-	DNA polymerase beta subunit
1030	 60.00	0	951436..951855	-	139	145591296	-	Pars_1068	-	HEPN domain-containing protein
1031	 62.22	+1	952458..953558	+	366	145591297	-	Pars_1069	-	hypothetical protein
1032	 56.65	0	954535..955962	-	475	145591298	-	Pars_1070	-	hypothetical protein
1033	 60.22	0	955998..957206	-	402	145591299	-	Pars_1071	-	acetyl-CoA acetyltransferase
1034	 59.22	0	957327..958481	+	384	145591300	-	Pars_1072	-	methionine synthase, vitamin-B12 independent
1035	 54.63	0	959241..960395	-	384	145591301	-	Pars_1073	-	hypothetical protein
1036	 49.80	0	960484..960975	-	163	145591302	-	Pars_1074	-	hypothetical protein
1037	 60.35	0	961202..963337	+	711	145591303	-	Pars_1075	-	hypothetical protein
1038	 56.20	0	963523..964563	-	346	145591304	-	Pars_1076	-	hypothetical protein
1039	 55.92	0	964926..965558	+	210	145591305	-	Pars_1077	-	cyclase family protein
1040	 63.86	+1	965555..966445	+	296	145591306	-	Pars_1078	-	homoserine kinase
1041	 48.74	-1	966479..966835	-	118	145591307	-	Pars_1079	-	hypothetical protein
1042	 63.97	+1	966947..968281	-	444	145591308	-	Pars_1080	-	hypothetical protein
1043	 65.07	+1	968354..969103	+	249	145591309	fabG	Pars_1081	-	3-ketoacyl-(acyl-carrier-protein) reductase
1044	 61.74	+1	969736..970506	-	256	145591310	-	Pars_1082	-	hypothetical protein
1045	 59.47	0	970551..970967	-	138	145591311	-	Pars_1083	-	hypothetical protein
1046	 61.57	+1	971059..971823	+	254	145591312	-	Pars_1084	-	hypothetical protein
1047	 60.72	+1	971835..973028	-	397	145591313	-	Pars_1085	-	SufBD protein
1048	 58.37	0	973006..973692	-	228	145591314	-	Pars_1086	-	ABC transporter related
1049	 60.69	+1	973737..974171	-	144	145591315	-	Pars_1087	-	PadR-like family transcriptional regulator
1050	 55.64	0	974381..974770	+	129	145591316	-	Pars_1088	-	HEPN domain-containing protein
1051	 60.16	0	974763..975146	+	127	145591317	-	Pars_1089	-	DNA polymerase beta subunit
1052	 61.00	+1	975417..975875	+	152	145591318	-	Pars_1090	-	hypothetical protein
1053	 63.59	+1	975899..976549	+	216	145591319	-	Pars_1091	-	radical SAM domain-containing protein
1054	 62.02	+1	976578..976706	+	42	145591320	-	Pars_1092	-	hypothetical protein
1055	 62.34	+1	976706..977629	+	307	145591321	-	Pars_1093	-	peptidase M19, renal dipeptidase
1056	 52.48	0	977659..978222	-	187	145591322	-	Pars_1094	-	hypothetical protein
1057	 59.51	0	978527..979015	+	162	145591323	-	Pars_1095	-	PaREP1 domain-containing protein
1058	 65.02	+1	978993..979961	-	322	145591324	-	Pars_1096	-	tRNA (guanine-N1-)-methyltransferase
1059	 54.71	0	980681..981742	+	353	145591325	-	Pars_1097	-	asparagine synthetase A
1060	 55.68	0	981999..983300	+	433	145591326	-	Pars_1098	-	glutamate--ammonia ligase
1061	 50.14	0	983300..983995	+	231	145591327	-	Pars_1099	-	glutamine amidotransferase, class-II
1062	 54.03	0	984197..985858	+	553	145591328	-	Pars_1100	-	glutamate synthase alpha subunit
1063	 60.29	0	986269..988323	+	684	145591329	-	Pars_1101	-	glutamate synthase (NADPH)
1064	 58.10	0	988481..988900	+	139	145591330	-	Pars_1102	-	hypothetical protein
1065	 61.19	+1	988878..989297	+	139	145591331	-	Pars_1103	-	hypothetical protein
1066	 56.53	0	989805..990554	-	249	145591332	-	Pars_1104	-	beta-lactamase domain-containing protein
1067	 56.46	0	990554..991513	-	319	145591333	-	Pars_1105	-	ABC transporter related
1068	 54.14	0	991515..993206	-	563	145591334	-	Pars_1106	-	binding-protein-dependent transport systems inner membrane component
1069	 53.78	0	993203..994708	-	501	145591335	-	Pars_1107	-	extracellular solute-binding protein
1070	 64.55	+1	994887..996491	-	534	145591336	-	Pars_1108	-	AAA ATPase
1071	 66.93	+2	996488..997258	-	256	145591337	-	Pars_1109	-	CRISPR-associated protein APE2256 family
1072	 69.81	+2	997275..997814	-	179	145591338	-	Pars_1110	-	hypothetical protein
1073	 65.24	+1	997811..998860	-	349	145591339	-	Pars_1111	-	hypothetical protein
1074	 59.51	0	1002488..1003060	-	190	145591340	-	Pars_1112	-	hypothetical protein
1075	 56.57	0	1003497..1004348	-	283	145591341	-	Pars_1113	-	hypothetical protein
1076	 65.22	+1	1004361..1005053	-	230	145591342	-	Pars_1114	-	CRISPR-associated RAMP Cmr6 family protein
1077	 68.63	+2	1005050..1006117	-	355	145591343	-	Pars_1115	-	CRISPR-associated RAMP Cmr1 family protein
1078	 57.98	0	1006114..1006539	-	141	145591344	-	Pars_1116	-	CRISPR-associated Cmr5 family protein
1079	 61.49	+1	1006536..1007462	-	308	145591345	-	Pars_1117	-	CRISPR-associated RAMP Cmr4 family protein family protein
1080	 65.49	+1	1007542..1010178	+	878	145591346	-	Pars_1118	-	CRISPR-associated RAMP Crm2 family protein
1081	 66.91	+2	1010175..1010990	+	271	145591347	-	Pars_1119	-	hypothetical protein
1082	 61.14	+1	1010987..1012162	+	391	145591348	-	Pars_1120	-	hypothetical protein
1083	 65.97	+2	1018991..1019563	-	190	145591349	-	Pars_1121	-	CRISPR-associated Cas4 family protein
1084	 60.87	+1	1019547..1019822	-	91	145591350	-	Pars_1122	-	CRISPR-associated Cas2 family protein
1085	 67.01	+2	1019813..1020697	-	294	145591351	-	Pars_1123	-	CRISPR-associated Cas1 family protein
1086	 67.61	+2	1020678..1021526	-	282	145591352	-	Pars_1124	-	CRISPR-associated RAMP Csa1 family protein
1087	 64.90	+1	1021605..1022225	+	206	145591353	-	Pars_1125	-	transcriptional regulator, TrmB
1088	 55.65	0	1022275..1022610	+	111	145591354	-	Pars_1126	-	hypothetical protein
1089	 56.84	0	1022612..1023547	+	311	145591355	-	Pars_1127	-	CRISPR-associated autoregulator DevR family protein protein
1090	 57.58	0	1023547..1024437	+	296	145591356	-	Pars_1128	-	CRISPR-associated Cas5 family protein
1091	 54.47	0	1024424..1025317	+	297	145591357	-	Pars_1129	-	hypothetical protein
1092	 58.42	0	1025314..1026768	+	484	145591358	-	Pars_1130	-	CRISPR-associated helicase Cas3
1093	 59.49	0	1026761..1027429	+	222	145591359	-	Pars_1131	-	CRISPR-associated HD domain-containing protein
1094	 56.10	0	1027932..1028423	+	163	145591360	-	Pars_1132	-	PaREP1 domain-containing protein
1095	 66.67	+2	1028634..1029512	+	292	145591361	-	Pars_1133	-	CRISPR-associated Cas family protein
1096	 61.54	+1	1029522..1030712	-	396	145591362	-	Pars_1134	-	CRISPR-associated DxTHG family protein
1097	 63.00	+1	1030786..1031112	+	108	145591363	-	Pars_1135	-	hypothetical protein
1098	 61.44	+1	1031481..1031939	+	152	145591364	-	Pars_1136	-	HEPN domain-containing protein
1099	 57.76	0	1031896..1032333	+	145	145591365	-	Pars_1137	-	DNA polymerase beta subunit
1100	 63.79	+1	1033680..1034027	+	115	145591366	-	Pars_1140	-	hypothetical protein
1101	 58.71	0	1034133..1034396	+	87	145591367	-	Pars_1141	-	hypothetical protein
1102	 52.29	0	1035037..1035933	+	298	145591368	-	Pars_1142	-	manganese containing catalase
1103	 59.02	0	1036041..1036406	-	121	145591369	-	Pars_1143	-	hypothetical protein
1104	 63.30	+1	1036896..1037162	-	88	145591370	-	Pars_1145	-	hypothetical protein
1105	 65.45	+1	1038063..1038881	-	272	145591371	-	Pars_1147	-	CRISPR-associated RAMP Csa1 family protein
1106	 53.54	0	1039567..1040229	-	220	145591372	-	Pars_1148	-	hypothetical protein
1107	 53.26	0	1040400..1040675	-	91	145591373	-	Pars_1149	-	hypothetical protein
55.13	MEAN

5.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.