IslandPath Analysis: Pyrobaculum arsenaticum DSM 13514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.13   STD DEV: 5.40
Pyrobaculum arsenaticum DSM 13514, complete genome - 1..2121076
2299 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
958	 54.23	0	885376..886203	-	275	145591224	-	Pars_0994	-	aldo/keto reductase
959	 54.10	0	886297..887673	+	458	145591225	-	Pars_0995	-	peptidase U62, modulator of DNA gyrase
960	 56.00	0	887670..888953	+	427	145591226	-	Pars_0996	-	peptidase U62, modulator of DNA gyrase
961	 51.58	0	888971..889699	-	242	145591227	-	Pars_0997	-	creatininase
962	 51.71	0	890317..891312	+	331	145591228	-	Pars_0998	-	periplasmic solute binding protein
963	 61.56	+1	891413..892705	+	430	145591229	-	Pars_0999	-	major facilitator transporter
964	 56.74	0	892962..893495	-	177	145591230	-	Pars_1000	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
965	 54.15	0	893497..894087	-	196	145591231	-	Pars_1001	-	NADH-quinone oxidoreductase, B subunit
966	 58.49	0	894484..895437	-	317	145591232	-	Pars_1002	-	aldo/keto reductase
967	 48.61	-1	896063..896350	+	95	145591233	-	Pars_1003	-	MoaD family protein
968	 54.00	0	896328..897290	-	320	145591234	-	Pars_1004	-	beta-lactamase domain-containing protein
969	 58.51	0	897315..898013	+	232	145591235	-	Pars_1005	-	sugar fermentation stimulation protein
970	 60.74	+1	897984..898844	-	286	145591236	-	Pars_1006	-	hypothetical protein
971	 56.03	0	898874..899710	+	278	145591237	-	Pars_1007	-	beta-lactamase domain-containing protein
972	 54.27	0	899820..902570	+	916	145591238	-	Pars_1008	-	pyruvate phosphate dikinase
973	 50.74	0	902761..903030	+	89	145591239	-	Pars_1009	-	hypothetical protein
974	 54.97	0	903027..903761	+	244	145591240	-	Pars_1010	-	putative ATP binding protein
975	 48.89	-1	903854..904033	+	59	145591241	-	Pars_1011	-	hypothetical protein
976	 46.75	-1	904137..904382	+	81	145591242	-	Pars_1012	-	hypothetical protein
977	 53.31	0	904591..905466	+	291	145591243	-	Pars_1013	-	methionine aminopeptidase
978	 55.03	0	905698..907080	-	460	145591244	-	Pars_1014	-	phosphoenolpyruvate carboxylase
979	 52.72	0	907169..907591	+	140	145591245	-	Pars_1015	-	hypothetical protein
980	 62.06	+1	907636..908850	-	404	145591246	-	Pars_1016	-	peptidase M16 domain-containing protein
981	 57.41	0	909021..909398	-	125	145591247	-	Pars_1017	-	hypothetical protein
982	 57.82	0	909406..909699	-	97	145591248	-	Pars_1018	-	hypothetical protein
983	 53.31	0	910304..911149	-	281	145591249	-	Pars_1020	-	NAD+ synthetase
984	 56.46	0	911146..911478	-	110	145591250	-	Pars_1021	-	nitrogen regulatory protein P-II
985	 55.77	0	911475..912722	-	415	145591251	-	Pars_1022	-	Rh family protein/ammonium transporter
986	 49.51	-1	913341..913544	+	67	145591252	-	Pars_1023	-	hypothetical protein
987	 58.60	0	914502..914873	-	123	145591253	-	Pars_1025	-	DNA polymerase beta subunit
988	 55.08	0	914857..915279	-	140	145591254	-	Pars_1026	-	hypothetical protein
989	 59.29	0	915428..915820	+	130	145591255	-	Pars_1027	-	HEPN domain-containing protein
990	 56.84	0	915828..916112	+	94	145591256	-	Pars_1028	-	DNA polymerase beta subunit
991	 57.38	0	916511..917554	+	347	145591257	-	Pars_1029	-	hypothetical protein
992	 62.04	+1	917561..918187	-	208	145591258	-	Pars_1030	-	hypothetical protein
993	 62.00	+1	918236..919156	+	306	145591259	-	Pars_1031	-	NAD-dependent epimerase/dehydratase
994	 63.77	+1	919146..920285	-	379	145591260	-	Pars_1032	-	hypothetical protein
995	 64.59	+1	920298..921644	-	448	145591261	-	Pars_1033	-	hypothetical protein
996	 52.38	0	921641..921913	-	90	145591262	-	Pars_1034	-	hypothetical protein
997	 62.32	+1	922253..923380	+	375	145591263	-	Pars_1035	-	2-methylcitrate synthase/citrate synthase II
998	 53.47	0	923439..923726	+	95	145591264	-	Pars_1036	-	hypothetical protein
999	 60.46	0	923763..924374	+	203	145591265	-	Pars_1037	-	hypothetical protein
1000	 55.82	0	924908..925672	-	254	145591266	-	Pars_1038	-	zinc/iron permease
1001	 59.62	0	925755..926747	+	330	145591267	-	Pars_1039	-	zinc finger, RanBP2-type
1002	 60.67	+1	926744..927043	+	99	145591268	-	Pars_1040	-	hypothetical protein
1003	 62.43	+1	927073..927993	+	306	145591269	-	Pars_1041	-	hypothetical protein
1004	 58.28	0	928116..929057	-	313	145591270	-	Pars_1042	-	paREP2b
1005	 57.09	0	929073..929939	-	288	145591271	-	Pars_1043	-	hypothetical protein
1006	 62.16	+1	929971..930813	-	280	145591272	-	Pars_1044	-	zinc finger TFIIB-type domain-containing protein
1007	 58.94	0	930810..931844	-	344	145591273	-	Pars_1045	-	hypothetical protein
1008	 57.80	0	931861..932796	+	311	145591274	-	Pars_1046	-	aminotransferase, class I and II
1009	 54.87	0	932954..933589	+	211	145591275	-	Pars_1047	-	RNA 2'-phosphotransferase-like protein
1010	 61.57	+1	933883..934746	+	287	145591276	-	Pars_1048	-	Fis family transcriptional regulator
1011	 54.33	0	934753..935052	-	99	145591277	-	Pars_1049	-	PilT domain-containing protein
1012	 56.03	0	935136..935276	-	46	145591278	-	Pars_1050	-	hypothetical protein
1013	 57.12	0	935435..936010	+	191	145591279	-	Pars_1051	-	hypothetical protein
1014	 64.40	+1	935932..937209	-	425	145591280	-	Pars_1052	-	hypothetical protein
1015	 59.22	0	937187..938758	-	523	145591281	-	Pars_1053	-	ATPase
1016	 56.78	0	938933..939640	+	235	145591282	-	Pars_1054	-	hypothetical protein
1017	 62.03	+1	940044..940928	+	294	145591283	-	Pars_1055	-	hypothetical protein
1018	 63.84	+1	940944..941864	+	306	145591284	-	Pars_1056	-	hypothetical protein
1019	 51.55	0	942051..942308	-	85	145591285	-	Pars_1057	-	hypothetical protein
1020	 52.67	0	942286..942828	-	180	145591286	-	Pars_1058	-	hypothetical protein
1021	 57.71	0	942836..944041	-	401	145591287	-	Pars_1059	-	hypothetical protein
1022	 60.46	0	944121..946229	+	702	145591288	-	Pars_1060	-	hypothetical protein
1023	 59.58	0	946226..946945	+	239	145591289	-	Pars_1061	-	ABC transporter related
1024	 49.70	-1	947136..947465	-	109	145591290	-	Pars_1062	-	hypothetical protein
1025	 62.90	+1	948030..948878	+	282	145591291	-	Pars_1063	-	hypothetical protein
1026	 62.37	+1	948871..949965	+	364	145591292	-	Pars_1064	-	radical SAM domain-containing protein
1027	 58.58	0	950166..950573	-	135	145591293	-	Pars_1065	-	PilT domain-containing protein
1028	 55.56	0	950557..950790	-	77	145591294	-	Pars_1066	-	hypothetical protein
1029	 59.02	0	951132..951458	-	108	145591295	-	Pars_1067	-	DNA polymerase beta subunit
1030	 60.00	0	951436..951855	-	139	145591296	-	Pars_1068	-	HEPN domain-containing protein
1031	 62.22	+1	952458..953558	+	366	145591297	-	Pars_1069	-	hypothetical protein
1032	 56.65	0	954535..955962	-	475	145591298	-	Pars_1070	-	hypothetical protein
1033	 60.22	0	955998..957206	-	402	145591299	-	Pars_1071	-	acetyl-CoA acetyltransferase
1034	 59.22	0	957327..958481	+	384	145591300	-	Pars_1072	-	methionine synthase, vitamin-B12 independent
1035	 54.63	0	959241..960395	-	384	145591301	-	Pars_1073	-	hypothetical protein
1036	 49.80	0	960484..960975	-	163	145591302	-	Pars_1074	-	hypothetical protein
1037	 60.35	0	961202..963337	+	711	145591303	-	Pars_1075	-	hypothetical protein
1038	 56.20	0	963523..964563	-	346	145591304	-	Pars_1076	-	hypothetical protein
1039	 55.92	0	964926..965558	+	210	145591305	-	Pars_1077	-	cyclase family protein
1040	 63.86	+1	965555..966445	+	296	145591306	-	Pars_1078	-	homoserine kinase
1041	 48.74	-1	966479..966835	-	118	145591307	-	Pars_1079	-	hypothetical protein
1042	 63.97	+1	966947..968281	-	444	145591308	-	Pars_1080	-	hypothetical protein
1043	 65.07	+1	968354..969103	+	249	145591309	fabG	Pars_1081	-	3-ketoacyl-(acyl-carrier-protein) reductase
1044	 61.74	+1	969736..970506	-	256	145591310	-	Pars_1082	-	hypothetical protein
1045	 59.47	0	970551..970967	-	138	145591311	-	Pars_1083	-	hypothetical protein
1046	 61.57	+1	971059..971823	+	254	145591312	-	Pars_1084	-	hypothetical protein
1047	 60.72	+1	971835..973028	-	397	145591313	-	Pars_1085	-	SufBD protein
1048	 58.37	0	973006..973692	-	228	145591314	-	Pars_1086	-	ABC transporter related
1049	 60.69	+1	973737..974171	-	144	145591315	-	Pars_1087	-	PadR-like family transcriptional regulator
1050	 55.64	0	974381..974770	+	129	145591316	-	Pars_1088	-	HEPN domain-containing protein
1051	 60.16	0	974763..975146	+	127	145591317	-	Pars_1089	-	DNA polymerase beta subunit
1052	 61.00	+1	975417..975875	+	152	145591318	-	Pars_1090	-	hypothetical protein
1053	 63.59	+1	975899..976549	+	216	145591319	-	Pars_1091	-	radical SAM domain-containing protein
1054	 62.02	+1	976578..976706	+	42	145591320	-	Pars_1092	-	hypothetical protein
1055	 62.34	+1	976706..977629	+	307	145591321	-	Pars_1093	-	peptidase M19, renal dipeptidase
1056	 52.48	0	977659..978222	-	187	145591322	-	Pars_1094	-	hypothetical protein
1057	 59.51	0	978527..979015	+	162	145591323	-	Pars_1095	-	PaREP1 domain-containing protein
55.13	MEAN

5.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.