IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
949	 53.19	0	814072..816438	+	788	18312592	-	PAE1371	-	hypothetical protein
950	 50.62	0	816378..817262	-	294	18312593	-	PAE1372	-	hypothetical protein
951	 51.11	0	817263..817667	-	134	18312594	-	PAE1373	-	translation initiation factor IF-2 subunit beta
952	 48.27	0	817701..818249	-	182	18312595	-	PAE1375	-	protein associated with acetyl-CoA C-acyltransferase
953	 52.50	0	818251..819429	-	392	18312596	-	PAE1377	-	acetyl-CoA acetyltransferase
954	 50.69	0	819483..820715	-	410	18312597	-	PAE1378	-	acyl-CoA dehydrogenase
955	 51.15	0	820820..822553	+	577	18312598	-	PAE1379	-	long-chain-fatty-acid--CoA ligase
956	 53.97	0	822576..823520	+	314	18312599	-	PAE1381	-	aldo-keto reductase family protein
957	 52.09	0	823575..825563	+	662	18312600	-	PAE1383	-	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase
958	 51.70	0	825595..826683	+	362	18312601	-	PAE1385	-	aminopeptidase
959	 51.07	0	826684..827292	-	202	18312602	-	PAE1386	-	phosphate transport system regulator, conjectural
960	 48.58	0	827373..827864	-	163	18312603	-	PAE1387	-	paREP1
961	 53.33	0	827896..828600	-	234	18312604	-	PAE1388	-	branched-chain amino acid transport ATP-binding protein
962	 52.30	0	828591..829328	-	245	18312605	-	PAE1389	-	branched-chain amino acid transport ATP-binding protein
963	 51.82	0	829316..830278	-	320	18312606	-	PAE1390	-	branched-chain amino acid transport permease protein
964	 50.06	0	830275..831147	-	290	18312607	-	PAE1391	-	branched-chain amino acid transport permease protein
965	 53.70	0	831147..832565	-	472	18312608	-	PAE1392	-	branched-chain amino acid binding protein
966	 48.61	0	832687..833439	-	250	18312609	-	PAE1393	-	phosphate ABC transporter, ATP-binding protein
967	 54.25	0	833478..834395	-	305	18312610	-	PAE1395	-	phosphate ABC transporter, permease protein
968	 51.54	0	834392..835330	-	312	18312611	-	PAE1396	-	phosphate ABC transporter, permease protein
969	 53.20	0	835353..836585	-	410	18312612	-	PAE1397	-	phosphate-binding periplasmic protein, putative
970	 54.36	0	836731..837567	+	278	18312613	-	PAE1399	-	hypothetical protein
971	 50.30	0	837936..838265	+	109	18312614	-	PAE1403	-	hypothetical protein
972	 56.37	0	838426..838998	+	190	18312615	-	PAE1404	-	hypothetical protein
973	 58.15	+1	838988..839398	+	136	18312616	-	PAE1406	-	hypothetical protein
974	 54.04	0	839519..840619	+	366	18312617	-	PAE1407	-	hypothetical protein
975	 50.90	0	840609..841052	+	147	18312618	-	PAE1408	-	hypothetical protein
976	 56.49	0	841049..841765	+	238	18312619	-	PAE1409	-	hypothetical protein
977	 53.22	0	842580..842750	-	56	18312620	-	PAE1413	-	paREP6, authentic frameshift
978	 53.29	0	842991..843461	+	156	18312621	-	PAE1414	-	hypothetical protein
979	 41.79	-1	843676..844065	+	129	18312622	-	PAE1418	-	hypothetical protein
980	 17.31	-2	844347..844502	-	51	18312623	-	PAE1419	-	hypothetical protein
981	 34.88	-2	844477..844605	-	42	18312624	-	PAE1420	-	hypothetical protein
982	 48.28	0	844790..845050	+	86	18312625	-	PAE1421	-	hypothetical protein
983	 43.17	-1	845031..845528	+	165	18312626	-	PAE1422	-	hypothetical protein
984	 48.36	0	845502..847358	-	618	18312627	-	PAE1423	-	carbon starvation protein A-like protein
985	 38.23	-2	847432..847758	+	108	18312628	-	PAE1425	-	hypothetical protein
986	 43.08	-1	847981..848883	+	300	18312629	-	PAE1427	-	arsenical pump-driving ATPase
987	 45.83	-1	849158..849253	-	31	18312630	-	PAE1429	-	hypothetical protein
988	 35.67	-2	849549..849719	-	56	18312631	-	PAE1430	-	hypothetical protein
989	 45.34	-1	849883..850365	+	160	18312632	-	PAE1432	-	hypothetical protein
990	 59.78	+1	850362..850898	+	178	18312633	-	PAE1433	-	hypothetical protein
991	 52.98	0	850941..851225	+	94	18312634	-	PAE1434	-	hypothetical protein
992	 47.97	0	851454..851822	-	122	18312635	-	PAE1435	-	hypothetical protein
993	 52.83	0	851844..852002	-	52	18312636	-	PAE1436	-	paREP10
994	 51.74	0	852149..852436	+	95	18312637	-	PAE1437	-	hypothetical protein
995	 54.19	0	852942..853478	-	178	18312638	-	PAE1438	-	nicotinamide-nucleotide adenylyltransferase
996	 52.79	0	853893..855362	-	489	18312639	pheS	PAE1441	-	phenylalanyl-tRNA synthetase subunit alpha
997	 48.51	0	855393..855728	-	111	18312640	-	PAE1443	-	hypothetical protein
998	 51.57	0	855753..856070	-	105	18312641	-	PAE1445	-	hypothetical protein
999	 49.25	0	856107..857237	-	376	18312642	-	PAE1446	-	hypothetical protein
1000	 52.33	0	857347..858846	-	499	18312643	-	PAE1448	-	hypothetical protein
1001	 49.16	0	858908..859204	+	98	18312644	-	PAE1449	-	hypothetical protein
1002	 52.22	0	859201..860418	-	405	18312645	-	PAE1451	-	hypothetical protein
1003	 54.05	0	860454..860786	-	110	18312646	-	PAE1453	-	hypothetical protein
1004	 47.71	0	860907..861059	-	50	18312647	-	PAE1454	-	paREP2a
1005	 54.70	0	861206..861322	-	38	18312648	-	PAE1456	-	paREP2a
1006	 56.06	0	861572..861769	-	65	18312649	-	PAE1459	-	paREP9, associated with SRSRs, authentic frameshift
1007	 57.18	+1	861756..862166	-	136	18312650	-	PAE1461	-	hypothetical protein
1008	 51.63	0	862318..862809	+	163	18312651	-	PAE1463	-	hypothetical protein
1009	 57.75	+1	862928..863140	+	70	18312652	-	PAE1465	-	hypothetical protein
1010	 55.89	0	863204..863806	+	200	18312653	-	PAE1467	-	hypothetical protein
1011	 56.00	0	863842..863991	+	49	18312654	-	PAE1469	-	hypothetical protein
1012	 55.95	0	864812..865492	+	226	18312655	-	PAE1472	-	acetyl/acyl transferase related protein
1013	 56.75	+1	865533..866480	-	315	18312656	-	PAE1474	-	aminopeptidase
1014	 59.76	+1	866541..867206	+	221	18312657	-	PAE1476	-	purine nucleoside phosphorylase
1015	 49.12	0	867201..868841	-	546	18312658	-	PAE1478	-	hypothetical protein
1016	 53.36	0	869374..870267	+	297	18312659	-	PAE1479	-	hypothetical protein
1017	 54.09	0	870314..870472	+	52	18312660	-	PAE1480	-	paREP10
1018	 56.49	0	870482..871051	-	189	18312661	-	PAE1481	-	phenylacrylic acid decarboxylase-like protein
1019	 56.40	0	871038..871748	-	236	18312662	-	PAE1483	-	hypothetical protein
1020	 46.59	0	871783..872031	+	82	18312663	-	PAE1484	-	hypothetical protein
1021	 52.55	0	872242..873063	+	273	18312664	-	PAE1486	-	hypothetical protein
1022	 51.71	0	873060..873527	-	155	18312665	-	PAE1488	-	hypothetical protein
1023	 51.40	0	873607..874215	-	202	18312666	-	PAE1489	-	hypothetical protein
1024	 54.50	0	874244..874621	-	125	18312667	-	PAE1490	-	S-adenosylmethionine decarboxylase proenzyme
1025	 51.24	0	875704..876267	+	187	18312668	-	PAE1496	-	hypothetical protein
1026	 53.76	0	876267..876452	+	61	18312669	-	PAE1497	-	hypothetical protein
1027	 54.21	0	876500..879124	+	874	18312670	-	PAE1499	-	aconitate hydratase
1028	 52.42	0	879150..879479	+	109	18312671	-	PAE1500	-	hypothetical protein
1029	 57.89	+1	879522..880205	+	227	18312672	-	PAE1501	-	triosephosphate isomerase
1030	 53.41	0	880260..880538	-	92	18312673	-	PAE1502	-	hypothetical protein
1031	 57.34	+1	880606..880959	+	117	18312674	-	PAE1503	-	hypothetical protein
1032	 53.02	0	881616..882062	+	148	18312675	-	PAE1505	-	30S ribosomal protein S6e
1033	 41.56	-1	882063..882305	-	80	18312676	-	PAE1507	-	AsnC family transcriptional regulator
1034	 44.44	-1	882379..882468	+	29	18312677	-	PAE1507a	-	hypothetical protein
1035	 51.24	0	882559..882759	+	66	18312678	-	PAE1509	-	hypothetical protein
1036	 53.94	0	882804..883133	+	109	18312679	-	PAE1511	-	hypothetical protein
1037	 54.07	0	883670..885439	-	589	18312680	-	PAE1513	-	translation initiation factor IF-2
1038	 55.49	0	885579..886106	-	175	18312681	-	PAE1514	-	paREP2b
1039	 57.05	+1	886245..886712	+	155	18312682	-	PAE1515	-	paREP8
1040	 49.44	0	886809..886988	+	59	18312683	-	PAE1516	-	hypothetical protein
1041	 48.56	0	886977..887357	-	126	18312684	-	PAE1517	-	hypothetical protein
1042	 50.47	0	887414..887839	+	141	18312685	-	PAE1518	-	hypothetical protein
1043	 56.80	+1	887836..888798	+	320	18312686	-	PAE1519	-	hypothetical protein
1044	 47.62	0	888877..889023	-	48	18312687	-	PAE1521	-	hypothetical protein
1045	 50.68	0	889095..889970	+	291	18312688	-	PAE1522	-	hypothetical protein
1046	 49.39	0	890115..890687	+	190	18312689	-	PAE1523	-	hypothetical protein
1047	 56.00	0	890814..892013	+	399	18312690	-	PAE1525	-	Glu-tRNA(Gln) amidotransferase subunit A (gatA)
1048	 53.11	0	891995..892798	-	267	18312691	-	PAE1526	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.