IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
918	 57.88	+1	789004..789447	+	147	18312561	-	PAE1329	-	hypothetical protein
919	 56.91	+1	789498..791075	+	525	18312562	-	PAE1330	-	alpha-isopropylmalate/homocitrate synthase family transferase
920	 41.68	-1	791086..792498	-	470	18312563	-	PAE1331	-	iron-sulfur protein
921	 54.31	0	792839..793267	-	142	18312564	-	PAE1332	-	hypothetical protein
922	 52.45	0	793267..794103	-	278	18312565	ubiA	PAE1333	-	prenyltransferase
923	 51.69	0	794139..794672	-	177	18312566	-	PAE1334	-	respiratory chain protein
924	 49.23	0	794632..794826	-	64	18312567	-	PAE1336	-	respiratory chain protein
925	 54.43	0	794823..797225	-	800	18312568	-	PAE1337	-	cytochrome C oxidase subunit I /III
926	 49.78	0	797225..797674	-	149	18312569	-	PAE1338	-	cytochrome C oxidase subunit II
927	 46.67	0	797661..797900	-	79	18312570	-	PAE1340	-	respiratory chain protein (soxI homolog)
928	 56.76	+1	798072..798929	+	285	18312571	-	PAE1344	-	respiratory chain protein
929	 55.35	0	798929..800872	+	647	18312572	-	PAE1345	-	hypothetical protein
930	 54.96	0	800977..801540	+	187	18312573	-	PAE1347	-	hypothetical protein
931	 52.23	0	801542..802102	+	186	18312574	-	PAE1349	-	Rieske iron sulfur protein (parR)
932	 52.90	0	802099..803340	+	413	18312575	-	PAE1350	-	cytochrome b/b6
933	 60.91	+1	803343..803672	+	109	18312576	-	PAE1351	-	hypothetical protein
934	 46.12	-1	803665..803922	+	85	18312577	-	PAE1352	-	hypothetical protein
935	 52.41	0	804233..804709	+	158	18312578	-	PAE1355	-	cytochrome C oxidase subunit II
936	 52.33	0	804755..806428	+	557	18312579	-	PAE1357	-	cytochrome C oxidase subunit I
937	 51.44	0	806460..807083	+	207	18312580	-	PAE1358	-	senC-like protein
938	 53.55	0	807083..807448	+	121	18312581	-	PAE1359	-	hypothetical protein
939	 54.09	0	807518..808201	+	227	18312582	-	PAE1360	-	hypothetical protein
940	 55.93	0	808204..808818	+	204	18312583	-	PAE1361	-	hypothetical protein
941	 54.37	0	808772..809926	+	384	18312584	-	PAE1362	-	nosD-like protein
942	 53.94	0	809911..810570	+	219	18312585	-	PAE1363	-	branched-chain amino acid ABC transporter, ATP-binding protein, putative
943	 54.35	0	810560..811306	+	248	18312586	-	PAE1364	-	hypothetical protein
944	 49.43	0	811303..811650	+	115	18312587	-	PAE1365	-	hypothetical protein
945	 59.73	+1	811790..812236	+	148	18312588	-	PAE1366	-	hypothetical protein
946	 58.05	+1	812240..812866	+	208	18312589	-	PAE1367	-	hypothetical protein
947	 54.29	0	812845..813054	+	69	18312590	-	PAE1368	-	hypothetical protein
948	 55.60	0	813080..813883	+	267	18312591	-	PAE1369	-	hypothetical protein
949	 53.19	0	814072..816438	+	788	18312592	-	PAE1371	-	hypothetical protein
950	 50.62	0	816378..817262	-	294	18312593	-	PAE1372	-	hypothetical protein
951	 51.11	0	817263..817667	-	134	18312594	-	PAE1373	-	translation initiation factor IF-2 subunit beta
952	 48.27	0	817701..818249	-	182	18312595	-	PAE1375	-	protein associated with acetyl-CoA C-acyltransferase
953	 52.50	0	818251..819429	-	392	18312596	-	PAE1377	-	acetyl-CoA acetyltransferase
954	 50.69	0	819483..820715	-	410	18312597	-	PAE1378	-	acyl-CoA dehydrogenase
955	 51.15	0	820820..822553	+	577	18312598	-	PAE1379	-	long-chain-fatty-acid--CoA ligase
956	 53.97	0	822576..823520	+	314	18312599	-	PAE1381	-	aldo-keto reductase family protein
957	 52.09	0	823575..825563	+	662	18312600	-	PAE1383	-	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase
958	 51.70	0	825595..826683	+	362	18312601	-	PAE1385	-	aminopeptidase
959	 51.07	0	826684..827292	-	202	18312602	-	PAE1386	-	phosphate transport system regulator, conjectural
960	 48.58	0	827373..827864	-	163	18312603	-	PAE1387	-	paREP1
961	 53.33	0	827896..828600	-	234	18312604	-	PAE1388	-	branched-chain amino acid transport ATP-binding protein
962	 52.30	0	828591..829328	-	245	18312605	-	PAE1389	-	branched-chain amino acid transport ATP-binding protein
963	 51.82	0	829316..830278	-	320	18312606	-	PAE1390	-	branched-chain amino acid transport permease protein
964	 50.06	0	830275..831147	-	290	18312607	-	PAE1391	-	branched-chain amino acid transport permease protein
965	 53.70	0	831147..832565	-	472	18312608	-	PAE1392	-	branched-chain amino acid binding protein
966	 48.61	0	832687..833439	-	250	18312609	-	PAE1393	-	phosphate ABC transporter, ATP-binding protein
967	 54.25	0	833478..834395	-	305	18312610	-	PAE1395	-	phosphate ABC transporter, permease protein
968	 51.54	0	834392..835330	-	312	18312611	-	PAE1396	-	phosphate ABC transporter, permease protein
969	 53.20	0	835353..836585	-	410	18312612	-	PAE1397	-	phosphate-binding periplasmic protein, putative
970	 54.36	0	836731..837567	+	278	18312613	-	PAE1399	-	hypothetical protein
971	 50.30	0	837936..838265	+	109	18312614	-	PAE1403	-	hypothetical protein
972	 56.37	0	838426..838998	+	190	18312615	-	PAE1404	-	hypothetical protein
973	 58.15	+1	838988..839398	+	136	18312616	-	PAE1406	-	hypothetical protein
974	 54.04	0	839519..840619	+	366	18312617	-	PAE1407	-	hypothetical protein
975	 50.90	0	840609..841052	+	147	18312618	-	PAE1408	-	hypothetical protein
976	 56.49	0	841049..841765	+	238	18312619	-	PAE1409	-	hypothetical protein
977	 53.22	0	842580..842750	-	56	18312620	-	PAE1413	-	paREP6, authentic frameshift
978	 53.29	0	842991..843461	+	156	18312621	-	PAE1414	-	hypothetical protein
979	 41.79	-1	843676..844065	+	129	18312622	-	PAE1418	-	hypothetical protein
980	 17.31	-2	844347..844502	-	51	18312623	-	PAE1419	-	hypothetical protein
981	 34.88	-2	844477..844605	-	42	18312624	-	PAE1420	-	hypothetical protein
982	 48.28	0	844790..845050	+	86	18312625	-	PAE1421	-	hypothetical protein
983	 43.17	-1	845031..845528	+	165	18312626	-	PAE1422	-	hypothetical protein
984	 48.36	0	845502..847358	-	618	18312627	-	PAE1423	-	carbon starvation protein A-like protein
985	 38.23	-2	847432..847758	+	108	18312628	-	PAE1425	-	hypothetical protein
986	 43.08	-1	847981..848883	+	300	18312629	-	PAE1427	-	arsenical pump-driving ATPase
987	 45.83	-1	849158..849253	-	31	18312630	-	PAE1429	-	hypothetical protein
988	 35.67	-2	849549..849719	-	56	18312631	-	PAE1430	-	hypothetical protein
989	 45.34	-1	849883..850365	+	160	18312632	-	PAE1432	-	hypothetical protein
990	 59.78	+1	850362..850898	+	178	18312633	-	PAE1433	-	hypothetical protein
991	 52.98	0	850941..851225	+	94	18312634	-	PAE1434	-	hypothetical protein
992	 47.97	0	851454..851822	-	122	18312635	-	PAE1435	-	hypothetical protein
993	 52.83	0	851844..852002	-	52	18312636	-	PAE1436	-	paREP10
994	 51.74	0	852149..852436	+	95	18312637	-	PAE1437	-	hypothetical protein
995	 54.19	0	852942..853478	-	178	18312638	-	PAE1438	-	nicotinamide-nucleotide adenylyltransferase
996	 52.79	0	853893..855362	-	489	18312639	pheS	PAE1441	-	phenylalanyl-tRNA synthetase subunit alpha
997	 48.51	0	855393..855728	-	111	18312640	-	PAE1443	-	hypothetical protein
998	 51.57	0	855753..856070	-	105	18312641	-	PAE1445	-	hypothetical protein
999	 49.25	0	856107..857237	-	376	18312642	-	PAE1446	-	hypothetical protein
1000	 52.33	0	857347..858846	-	499	18312643	-	PAE1448	-	hypothetical protein
1001	 49.16	0	858908..859204	+	98	18312644	-	PAE1449	-	hypothetical protein
1002	 52.22	0	859201..860418	-	405	18312645	-	PAE1451	-	hypothetical protein
1003	 54.05	0	860454..860786	-	110	18312646	-	PAE1453	-	hypothetical protein
1004	 47.71	0	860907..861059	-	50	18312647	-	PAE1454	-	paREP2a
1005	 54.70	0	861206..861322	-	38	18312648	-	PAE1456	-	paREP2a
1006	 56.06	0	861572..861769	-	65	18312649	-	PAE1459	-	paREP9, associated with SRSRs, authentic frameshift
1007	 57.18	+1	861756..862166	-	136	18312650	-	PAE1461	-	hypothetical protein
1008	 51.63	0	862318..862809	+	163	18312651	-	PAE1463	-	hypothetical protein
1009	 57.75	+1	862928..863140	+	70	18312652	-	PAE1465	-	hypothetical protein
1010	 55.89	0	863204..863806	+	200	18312653	-	PAE1467	-	hypothetical protein
1011	 56.00	0	863842..863991	+	49	18312654	-	PAE1469	-	hypothetical protein
1012	 55.95	0	864812..865492	+	226	18312655	-	PAE1472	-	acetyl/acyl transferase related protein
1013	 56.75	+1	865533..866480	-	315	18312656	-	PAE1474	-	aminopeptidase
1014	 59.76	+1	866541..867206	+	221	18312657	-	PAE1476	-	purine nucleoside phosphorylase
1015	 49.12	0	867201..868841	-	546	18312658	-	PAE1478	-	hypothetical protein
1016	 53.36	0	869374..870267	+	297	18312659	-	PAE1479	-	hypothetical protein
1017	 54.09	0	870314..870472	+	52	18312660	-	PAE1480	-	paREP10
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.