IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
870	 54.37	0	741680..742891	+	403	18312513	-	PAE1269	-	hypothetical protein
871	 43.33	-1	742897..743886	-	329	18312514	-	PAE1270	-	hypothetical protein
872	 52.32	0	744202..745212	-	336	18312515	-	PAE1271	-	hypothetical protein
873	 46.48	-1	745666..747879	+	737	18312516	-	PAE1272	-	trehalose-6-phosphate synthase
874	 45.91	-1	747870..749078	-	402	18312517	-	PAE1273	-	glycosyl transferase, conjectural
875	 36.68	-2	749075..749671	-	198	18312518	-	PAE1275	-	hypothetical protein
876	 44.44	-1	750002..750667	+	221	18312519	-	PAE1277	-	hypothetical protein
877	 47.10	0	750664..751869	+	401	18312520	-	PAE1278	-	trehalose synthase
878	 51.34	0	752766..753476	+	236	18312521	-	PAE1279	-	hypothetical protein
879	 49.18	0	753489..754403	+	304	18312522	-	PAE1280	-	hypothetical protein
880	 49.16	0	754400..754696	+	98	18312523	-	PAE1281	-	glycolate oxidase subunit, putative
881	 53.23	0	754676..755836	-	386	18312524	-	PAE1282	-	glycolate oxidase subunit glcF
882	 58.03	+1	755833..756816	-	327	18312525	-	PAE1284	-	glycolate oxidase subunit glcE
883	 57.07	+1	756813..758240	-	475	18312526	-	PAE1286	-	glycolate oxidase subunit glcD
884	 52.87	0	758297..760738	+	813	18312527	-	PAE1287	-	malate synthase (glcB)
885	 51.51	0	760768..761697	+	309	18312528	-	PAE1288	-	hypothetical protein
886	 52.81	0	761694..762833	+	379	18312529	-	PAE1289	-	hypothetical protein
887	 36.52	-2	762837..763589	-	250	18312530	-	PAE1290	-	hypothetical protein
888	 38.64	-2	763665..763796	-	43	18312531	-	PAE1292	-	hypothetical protein
889	 41.98	-1	763997..765454	+	485	18312532	-	PAE1293	-	hypothetical protein
890	 52.40	0	765456..766226	-	256	18312533	-	PAE1295	-	hypothetical protein
891	 50.05	0	766253..767215	-	320	18312534	-	PAE1296	-	dipeptide transport ATP-binding protein
892	 49.64	0	767212..768180	-	322	18312535	-	PAE1297	-	dipeptide transport ATP-binding protein
893	 46.29	-1	768177..769241	-	354	18312536	-	PAE1298	-	dipeptide ABC transporter, permease protein
894	 40.54	-2	769243..770241	-	332	18312537	-	PAE1299	-	dipeptide ABC transporter, permease protein
895	 42.86	-1	770248..772461	-	737	18312538	-	PAE1300	-	dipeptide binding protein
896	 54.57	0	772552..775602	-	1016	18312539	-	PAE1302	-	tricorn protease
897	 54.81	0	775643..776047	+	134	18312540	-	PAE1303	-	hypothetical protein
898	 55.18	0	776039..776482	-	147	18312541	-	PAE1304	-	hypothetical protein
899	 56.47	0	776589..777755	-	388	18312542	-	PAE1306	-	hypothetical protein
900	 56.93	+1	777805..778626	-	273	18312543	-	PAE1307	-	hypothetical protein
901	 59.64	+1	778647..779984	-	445	18312544	-	PAE1309	-	hypothetical protein
902	 53.93	0	780025..780393	+	122	18312545	-	PAE1310	-	hypothetical protein
903	 56.38	0	780366..780608	+	80	18312546	-	PAE1311	-	hypothetical protein
904	 50.31	0	780617..780775	+	52	18312547	-	PAE1313	-	hypothetical protein
905	 50.12	0	780817..781239	+	140	18312548	-	PAE1315	-	hypothetical protein
906	 53.49	0	781252..781509	+	85	18312549	-	PAE1316	-	hypothetical protein
907	 55.19	0	781498..781767	-	89	18312550	-	PAE1318	-	hypothetical protein
908	 45.24	-1	782022..782357	+	111	18312551	-	PAE1319	-	hypothetical protein
909	 48.67	0	782380..782718	+	112	18312552	-	PAE1320	-	hypothetical protein
910	 45.90	-1	782751..783824	-	357	18312553	-	PAE1321	-	multiple sugar-binding transport ATP-binding
911	 44.36	-1	783821..784654	-	277	18312554	-	PAE1322	-	multiple sugar transport permease
912	 42.66	-1	784651..785529	-	292	18312555	-	PAE1323	-	multiple sugar transport permease
913	 48.25	0	785526..786839	-	437	18312556	-	PAE1324	-	multiple sugar binding protein
914	 32.50	-2	786815..786934	-	39	18312557	-	PAE1325	-	hypothetical protein
915	 44.44	-1	787362..787487	+	41	18312558	-	PAE1326	-	hypothetical protein
916	 59.18	+1	787474..788154	+	226	18312559	-	PAE1327	-	uracil-DNA glycosylase
917	 57.98	+1	788151..788990	+	279	18312560	-	PAE1328	-	hypothetical protein
918	 57.88	+1	789004..789447	+	147	18312561	-	PAE1329	-	hypothetical protein
919	 56.91	+1	789498..791075	+	525	18312562	-	PAE1330	-	alpha-isopropylmalate/homocitrate synthase family transferase
920	 41.68	-1	791086..792498	-	470	18312563	-	PAE1331	-	iron-sulfur protein
921	 54.31	0	792839..793267	-	142	18312564	-	PAE1332	-	hypothetical protein
922	 52.45	0	793267..794103	-	278	18312565	ubiA	PAE1333	-	prenyltransferase
923	 51.69	0	794139..794672	-	177	18312566	-	PAE1334	-	respiratory chain protein
924	 49.23	0	794632..794826	-	64	18312567	-	PAE1336	-	respiratory chain protein
925	 54.43	0	794823..797225	-	800	18312568	-	PAE1337	-	cytochrome C oxidase subunit I /III
926	 49.78	0	797225..797674	-	149	18312569	-	PAE1338	-	cytochrome C oxidase subunit II
927	 46.67	0	797661..797900	-	79	18312570	-	PAE1340	-	respiratory chain protein (soxI homolog)
928	 56.76	+1	798072..798929	+	285	18312571	-	PAE1344	-	respiratory chain protein
929	 55.35	0	798929..800872	+	647	18312572	-	PAE1345	-	hypothetical protein
930	 54.96	0	800977..801540	+	187	18312573	-	PAE1347	-	hypothetical protein
931	 52.23	0	801542..802102	+	186	18312574	-	PAE1349	-	Rieske iron sulfur protein (parR)
932	 52.90	0	802099..803340	+	413	18312575	-	PAE1350	-	cytochrome b/b6
933	 60.91	+1	803343..803672	+	109	18312576	-	PAE1351	-	hypothetical protein
934	 46.12	-1	803665..803922	+	85	18312577	-	PAE1352	-	hypothetical protein
935	 52.41	0	804233..804709	+	158	18312578	-	PAE1355	-	cytochrome C oxidase subunit II
936	 52.33	0	804755..806428	+	557	18312579	-	PAE1357	-	cytochrome C oxidase subunit I
937	 51.44	0	806460..807083	+	207	18312580	-	PAE1358	-	senC-like protein
938	 53.55	0	807083..807448	+	121	18312581	-	PAE1359	-	hypothetical protein
939	 54.09	0	807518..808201	+	227	18312582	-	PAE1360	-	hypothetical protein
940	 55.93	0	808204..808818	+	204	18312583	-	PAE1361	-	hypothetical protein
941	 54.37	0	808772..809926	+	384	18312584	-	PAE1362	-	nosD-like protein
942	 53.94	0	809911..810570	+	219	18312585	-	PAE1363	-	branched-chain amino acid ABC transporter, ATP-binding protein, putative
943	 54.35	0	810560..811306	+	248	18312586	-	PAE1364	-	hypothetical protein
944	 49.43	0	811303..811650	+	115	18312587	-	PAE1365	-	hypothetical protein
945	 59.73	+1	811790..812236	+	148	18312588	-	PAE1366	-	hypothetical protein
946	 58.05	+1	812240..812866	+	208	18312589	-	PAE1367	-	hypothetical protein
947	 54.29	0	812845..813054	+	69	18312590	-	PAE1368	-	hypothetical protein
948	 55.60	0	813080..813883	+	267	18312591	-	PAE1369	-	hypothetical protein
949	 53.19	0	814072..816438	+	788	18312592	-	PAE1371	-	hypothetical protein
950	 50.62	0	816378..817262	-	294	18312593	-	PAE1372	-	hypothetical protein
951	 51.11	0	817263..817667	-	134	18312594	-	PAE1373	-	translation initiation factor IF-2 subunit beta
952	 48.27	0	817701..818249	-	182	18312595	-	PAE1375	-	protein associated with acetyl-CoA C-acyltransferase
953	 52.50	0	818251..819429	-	392	18312596	-	PAE1377	-	acetyl-CoA acetyltransferase
954	 50.69	0	819483..820715	-	410	18312597	-	PAE1378	-	acyl-CoA dehydrogenase
955	 51.15	0	820820..822553	+	577	18312598	-	PAE1379	-	long-chain-fatty-acid--CoA ligase
956	 53.97	0	822576..823520	+	314	18312599	-	PAE1381	-	aldo-keto reductase family protein
957	 52.09	0	823575..825563	+	662	18312600	-	PAE1383	-	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase
958	 51.70	0	825595..826683	+	362	18312601	-	PAE1385	-	aminopeptidase
959	 51.07	0	826684..827292	-	202	18312602	-	PAE1386	-	phosphate transport system regulator, conjectural
960	 48.58	0	827373..827864	-	163	18312603	-	PAE1387	-	paREP1
961	 53.33	0	827896..828600	-	234	18312604	-	PAE1388	-	branched-chain amino acid transport ATP-binding protein
962	 52.30	0	828591..829328	-	245	18312605	-	PAE1389	-	branched-chain amino acid transport ATP-binding protein
963	 51.82	0	829316..830278	-	320	18312606	-	PAE1390	-	branched-chain amino acid transport permease protein
964	 50.06	0	830275..831147	-	290	18312607	-	PAE1391	-	branched-chain amino acid transport permease protein
965	 53.70	0	831147..832565	-	472	18312608	-	PAE1392	-	branched-chain amino acid binding protein
966	 48.61	0	832687..833439	-	250	18312609	-	PAE1393	-	phosphate ABC transporter, ATP-binding protein
967	 54.25	0	833478..834395	-	305	18312610	-	PAE1395	-	phosphate ABC transporter, permease protein
968	 51.54	0	834392..835330	-	312	18312611	-	PAE1396	-	phosphate ABC transporter, permease protein
969	 53.20	0	835353..836585	-	410	18312612	-	PAE1397	-	phosphate-binding periplasmic protein, putative
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.