IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
793	 50.57	0	676103..676624	+	173	18312436	-	PAE1147	-	hypothetical protein
794	 55.91	0	676919..677299	+	126	18312437	-	PAE1151	-	hypothetical protein
795	 53.58	0	677296..677616	-	106	18312438	-	PAE1153	-	hypothetical protein
796	 50.74	0	677597..678004	-	135	18312439	-	PAE1155	-	hypothetical protein
797	 54.15	0	678001..678807	-	268	18312440	-	PAE1156	-	hypothetical protein
798	 48.84	0	679224..679526	+	100	18312441	-	PAE1158	-	hypothetical protein
799	 50.44	0	679601..679939	-	112	18312442	-	PAE1159	-	hypothetical protein
800	 53.80	0	680018..680320	+	100	18312443	-	PAE1161	-	hypothetical protein
801	 48.79	0	680340..680669	+	109	18312444	-	PAE1162	-	hypothetical protein
802	 55.00	0	680655..681734	-	359	18312445	-	PAE1163	-	hypothetical protein
803	 52.31	0	681801..682859	+	352	18312446	-	PAE1164	-	hypothetical protein
804	 54.71	0	682909..683460	+	183	18312447	-	PAE1165	-	hypothetical protein
805	 59.00	+1	683603..684319	+	238	18312448	-	PAE1166	-	hypothetical protein
806	 54.55	0	684300..684959	-	219	18312449	-	PAE1168	-	ABC transporter ATP-binding protein, putative
807	 52.97	0	685018..686163	-	381	18312450	-	PAE1171	-	hypothetical protein
808	 56.47	0	686193..687320	+	375	18312451	-	PAE1173	-	hypothetical protein
809	 56.07	0	687342..688247	+	301	18312452	-	PAE1175	-	2-hydroxyacid dehydrogenase
810	 52.42	0	688263..688592	+	109	18312453	-	PAE1176	-	hypothetical protein
811	 51.85	0	688641..688883	+	80	18312454	-	PAE1177	-	hypothetical protein
812	 56.86	+1	688944..689147	-	67	18312455	-	PAE1179	-	paREP2b
813	 51.70	0	689199..692819	-	1206	18312456	-	PAE1180	-	paREP2b
814	 54.40	0	692902..693822	+	306	18312457	-	PAE1181	-	paREP2a
815	 51.29	0	693806..694462	+	218	18312458	rps5p	PAE1182	-	30S ribosomal protein S5P
816	 52.33	0	694459..694995	+	178	18312459	rpl30p	PAE1183	-	50S ribosomal protein L30P
817	 53.50	0	694975..695931	-	318	18312460	-	PAE1184	-	galactose-1-phosphate uridylyltransferase
818	 54.79	0	695921..697006	-	361	18312461	-	PAE1185	-	galactokinase
819	 48.58	0	696991..697587	-	198	18312462	-	PAE1186	-	hypothetical protein
820	 48.92	0	697721..697951	-	76	18312463	-	PAE1188	-	hypothetical protein
821	 51.08	0	698047..699759	+	570	18312464	-	PAE1189	-	acylamino-acid-releasing enzyme, conjectural
822	 53.85	0	699818..700714	-	298	18312465	-	PAE1191	-	paREP2b
823	 63.06	+2	700843..700953	-	36	18312466	-	PAE1192	-	hypothetical protein
824	 57.06	+1	700969..701499	-	176	18312467	-	PAE1194	-	hypothetical protein
825	 49.17	0	701485..701787	+	100	18312468	-	PAE1195	-	hypothetical protein
826	 48.65	0	702031..702585	-	184	18312469	-	PAE1197	-	hypothetical protein
827	 40.90	-2	702708..703394	-	228	18312470	-	PAE1199	-	ABC transporter ATP-binding protein, putative
828	 41.56	-1	703671..703901	-	76	18312471	-	PAE1200	-	hypothetical protein
829	 50.74	0	704053..704322	+	89	18312472	-	PAE1201	-	paREP2a
830	 49.20	0	704430..705305	+	291	18312473	-	PAE1203	-	spermidine synthase
831	 55.61	0	705298..706509	+	403	18312474	-	PAE1204	-	pantothenate metabolism flavoprotein (dfp)
832	 52.50	0	706465..707163	-	232	18312475	-	PAE1205	-	hypothetical protein
833	 54.40	0	707583..708014	+	143	18312476	-	PAE1208	-	hypothetical protein
834	 56.15	0	708014..709420	+	468	18312477	-	PAE1209	-	4-alpha-glucanotransferase (malQ)
835	 55.99	0	709547..710389	-	280	18312478	-	PAE1211	-	paREP2a
836	 50.26	0	710379..710756	-	125	18312479	-	PAE1213	-	paREP2a
837	 56.85	+1	710914..711942	+	342	18312480	-	PAE1214	-	paREP2b
838	 53.29	0	711986..714982	+	998	18312481	-	PAE1215	-	paREP2b
839	 53.83	0	715015..715653	-	212	18312482	-	PAE1216	-	ribonuclease HII (rnhB)
840	 53.75	0	715849..716328	-	159	18312483	-	PAE1218	-	hypothetical protein
841	 51.62	0	716321..717124	-	267	18312484	-	PAE1219	-	NH(3)-dependent NAD(+) synthetase
842	 55.27	0	717144..718328	-	394	18312485	-	PAE1220	-	acetyl-CoA C-acetyltransferase
843	 51.63	0	718372..719442	-	356	18312486	-	PAE1222	-	ABC transporter ATP-binding protein, putative
844	 53.71	0	719499..720617	+	372	18312487	-	PAE1223	-	hypothetical protein
845	 51.83	0	720607..721098	+	163	18312488	-	PAE1224	-	hypothetical protein
846	 51.76	0	721121..722173	+	350	18312489	-	PAE1226	-	DNA endonuclease, conjectural
847	 52.82	0	722189..722578	+	129	18312490	-	PAE1227	-	hypothetical protein
848	 56.53	+1	722971..723651	-	226	18312491	-	PAE1231	-	deoxyribose-phosphate aldolase
849	 54.86	0	723707..723994	+	95	18312492	-	PAE1232	-	acylphosphatase, putative
850	 50.82	0	724081..724509	-	142	18312493	-	PAE1234	-	hypothetical protein
851	 43.24	-1	724499..724720	-	73	18312494	-	PAE1236	-	hypothetical protein
852	 52.60	0	724771..724962	-	63	18312495	-	PAE1238a	-	hypothetical protein
853	 53.06	0	725011..725157	+	48	18312496	-	PAE1239	-	hypothetical protein
854	 53.36	0	725307..726110	+	267	18312497	-	PAE1240	-	ribosomal protein S6 modification protein (rimK)
855	 50.30	0	726111..726446	-	111	18312498	-	PAE1241	-	hypothetical protein
856	 47.77	0	726447..726737	-	96	18312499	-	PAE1242	-	hypothetical protein
857	 55.64	0	726753..727532	-	259	18312500	-	PAE1244	-	translation initiation factor aIF-2B subunit, conjectural
858	 51.99	0	727642..728370	+	242	18312501	-	PAE1246	-	manganese ABC transporter ATP-binding protein
859	 52.51	0	728357..729232	+	291	18312502	-	PAE1247	-	manganese transport permease protein
860	 53.74	0	729511..730701	+	396	18312503	-	PAE1251	-	hypothetical protein
861	 51.82	0	730871..731941	+	356	18312504	-	PAE1252	-	hypothetical protein
862	 50.10	0	732350..732874	+	174	18312505	-	PAE1257	-	hypothetical protein
863	 44.05	-1	733169..733588	+	139	18312506	-	PAE1260	-	hypothetical protein
864	 40.18	-2	733591..734160	+	189	18312507	-	PAE1261	-	hypothetical protein
865	 48.84	0	734235..734879	+	214	18312508	-	PAE1263	-	molybdopterin oxidoreductase, iron-sulfur binding subunit
866	 44.41	-1	734876..735985	+	369	18312509	-	PAE1264	-	hypothetical protein
867	 49.89	0	735978..739499	+	1173	18312510	-	PAE1265	-	molybdopterin oxidoreductase, molybdopterin binding subunit
868	 54.73	0	739549..740151	+	200	18312511	-	PAE1266	-	hypothetical protein
869	 52.13	0	740220..741437	-	405	18312512	-	PAE1267	-	hypothetical protein
870	 54.37	0	741680..742891	+	403	18312513	-	PAE1269	-	hypothetical protein
871	 43.33	-1	742897..743886	-	329	18312514	-	PAE1270	-	hypothetical protein
872	 52.32	0	744202..745212	-	336	18312515	-	PAE1271	-	hypothetical protein
873	 46.48	-1	745666..747879	+	737	18312516	-	PAE1272	-	trehalose-6-phosphate synthase
874	 45.91	-1	747870..749078	-	402	18312517	-	PAE1273	-	glycosyl transferase, conjectural
875	 36.68	-2	749075..749671	-	198	18312518	-	PAE1275	-	hypothetical protein
876	 44.44	-1	750002..750667	+	221	18312519	-	PAE1277	-	hypothetical protein
877	 47.10	0	750664..751869	+	401	18312520	-	PAE1278	-	trehalose synthase
878	 51.34	0	752766..753476	+	236	18312521	-	PAE1279	-	hypothetical protein
879	 49.18	0	753489..754403	+	304	18312522	-	PAE1280	-	hypothetical protein
880	 49.16	0	754400..754696	+	98	18312523	-	PAE1281	-	glycolate oxidase subunit, putative
881	 53.23	0	754676..755836	-	386	18312524	-	PAE1282	-	glycolate oxidase subunit glcF
882	 58.03	+1	755833..756816	-	327	18312525	-	PAE1284	-	glycolate oxidase subunit glcE
883	 57.07	+1	756813..758240	-	475	18312526	-	PAE1286	-	glycolate oxidase subunit glcD
884	 52.87	0	758297..760738	+	813	18312527	-	PAE1287	-	malate synthase (glcB)
885	 51.51	0	760768..761697	+	309	18312528	-	PAE1288	-	hypothetical protein
886	 52.81	0	761694..762833	+	379	18312529	-	PAE1289	-	hypothetical protein
887	 36.52	-2	762837..763589	-	250	18312530	-	PAE1290	-	hypothetical protein
888	 38.64	-2	763665..763796	-	43	18312531	-	PAE1292	-	hypothetical protein
889	 41.98	-1	763997..765454	+	485	18312532	-	PAE1293	-	hypothetical protein
890	 52.40	0	765456..766226	-	256	18312533	-	PAE1295	-	hypothetical protein
891	 50.05	0	766253..767215	-	320	18312534	-	PAE1296	-	dipeptide transport ATP-binding protein
892	 49.64	0	767212..768180	-	322	18312535	-	PAE1297	-	dipeptide transport ATP-binding protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.