IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
578	 45.95	-1	484293..484847	+	184	18312221	-	PAE0839	-	hypothetical protein
579	 51.71	0	484816..485196	-	126	18312222	-	PAE0840	-	hypothetical protein
580	 54.33	0	485223..486284	+	353	18312223	-	PAE0841	-	hypothetical protein
581	 51.74	0	486748..487263	+	171	18312224	-	PAE0843	-	paREP1
582	 50.33	0	487416..487568	+	50	18312225	-	PAE0845	-	paREP2a
583	 51.11	0	487555..487734	+	59	18312226	-	PAE0846	-	paREP2a
584	 63.91	+2	488323..496680	+	2785	18312227	-	PAE0850	-	paREP2b
585	 56.99	+1	496670..496855	+	61	18312228	-	PAE0852	-	paREP2b
586	 44.69	-1	497136..497408	-	90	18312229	-	PAE0855	-	hypothetical protein
587	 52.84	0	497432..498328	-	298	18312230	-	PAE0857	-	hypothetical protein
588	 43.57	-1	498341..498682	-	113	18312231	-	PAE0858	-	hypothetical protein
589	 48.08	0	499073..499384	+	103	18312232	-	PAE0862	-	50S ribosomal protein L14e
590	 49.60	0	499381..500382	+	333	18312233	-	PAE0865	-	H/ACA RNA-protein complex component Cbf5p
591	 51.36	0	500455..500748	+	97	18312234	-	PAE0866	-	hypothetical protein
592	 52.12	0	500745..501239	+	164	18312235	-	PAE0867	-	hypothetical protein
593	 47.28	0	501260..501718	+	152	18312236	-	PAE0868	-	hypothetical protein
594	 52.20	0	501715..502647	+	310	18312237	-	PAE0870	-	NAD/P oxidoreductase
595	 46.70	0	502707..503252	+	181	18312238	-	PAE0871	-	hypothetical protein
596	 50.69	0	503249..503830	-	193	18312239	-	PAE0872	-	hypothetical protein
597	 48.56	0	503859..504344	+	161	18312240	-	PAE0874	-	hypothetical protein
598	 51.19	0	504334..505134	-	266	18312241	-	PAE0875	-	competence damage-inducible protein A
599	 51.31	0	505145..506023	-	292	18312242	-	PAE0876	-	hypothetical protein
600	 51.93	0	506064..506477	+	137	18312243	-	PAE0877	-	antioxidant protein, putative
601	 50.00	0	506474..506707	+	77	18312244	-	PAE0878	-	hypothetical protein
602	 48.72	0	506676..507065	-	129	18312245	-	PAE0879	-	hypothetical protein
603	 51.34	0	507117..507788	-	223	18312246	-	PAE0880	-	DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
604	 49.28	0	507834..508322	+	162	18312247	-	PAE0882	-	hypothetical protein
605	 51.02	0	508367..509152	+	261	18312248	-	PAE0883	-	hypothetical protein
606	 48.37	0	509526..511001	+	491	18312249	-	PAE0885	-	thermostable carboxypeptidase
607	 52.58	0	510998..511636	-	212	18312250	-	PAE0886	-	hypothetical protein
608	 52.14	0	511677..512144	+	155	18312251	-	PAE0887	-	phosphopantetheine adenylyltransferase
609	 53.64	0	512115..513434	-	439	18312252	-	PAE0888	-	hypothetical protein
610	 40.52	-2	513451..513798	-	115	18312253	-	PAE0889	-	hypothetical protein
611	 50.54	0	513918..514196	+	92	18312254	-	PAE0890	-	hypothetical protein
612	 52.47	0	514177..514986	-	269	18312255	-	PAE0891	-	hypothetical protein
613	 52.28	0	515091..516035	+	314	18312256	-	PAE0893	-	chorismate mutase/prephenate dehydratase (P-protein)
614	 54.66	0	516025..518139	-	704	18312257	-	PAE0894	-	ATP-dependent, DNA binding helicase
615	 54.63	0	518173..518388	-	71	18312258	-	PAE0894a	-	hypothetical protein
616	 53.30	0	518871..520913	+	680	18312259	-	PAE0901	-	DNA replication licensing factor (mcm)
617	 51.73	0	520969..521430	+	153	18312260	-	PAE0902	-	paREP8
618	 53.82	0	521829..522077	+	82	18312261	-	PAE0903	-	hypothetical protein
619	 50.79	0	522079..522456	+	125	18312262	-	PAE0904	-	hypothetical protein
620	 57.23	+1	522435..522773	+	112	18312263	-	PAE0905	-	hypothetical protein
621	 50.97	0	522813..524048	+	411	18312264	-	PAE0906	-	paREP7
622	 52.31	0	524292..524507	-	71	18312265	-	PAE0908	-	hypothetical protein
623	 68.06	+2	524593..524664	+	23	18312266	-	PAE0908a	-	hypothetical protein
624	 41.54	-1	524767..525168	+	133	18312267	-	PAE0909	-	hypothetical protein
625	 51.22	0	525864..526232	+	122	18312268	-	PAE0910	-	hypothetical protein
626	 54.21	0	526248..526544	+	98	18312269	-	PAE0910a	-	hypothetical protein
627	 54.87	0	526519..526857	+	112	18312270	-	PAE0913	-	hypothetical protein
628	 51.90	0	526940..529723	+	927	18312271	-	PAE0915	-	hypothetical protein
629	 55.15	0	529749..530486	+	245	18312272	-	PAE0916	-	hypothetical protein
630	 58.43	+1	530491..530757	+	88	18312273	-	PAE0917	-	hypothetical protein
631	 59.09	+1	530729..531718	-	329	18312274	-	PAE0918	-	histidinol-phosphate aminotransferase (hisC)
632	 41.32	-2	531732..532307	-	191	18312275	-	PAE0920	-	paREP15, putative coiled-coil protein
633	 56.00	0	532338..533753	-	471	18312276	-	PAE0922	-	hypothetical protein
634	 53.85	0	533900..534094	+	64	18312277	-	PAE0923	-	hypothetical protein
635	 52.78	0	534081..534620	+	179	18312278	-	PAE0924	-	hypothetical protein
636	 53.47	0	534608..534895	+	95	18312279	-	PAE0925	-	hypothetical protein
637	 51.35	0	534874..535428	+	184	18312280	-	PAE0926	-	hypothetical protein
638	 48.52	0	535423..535929	-	168	18312281	-	PAE0927	-	hypothetical protein
639	 47.91	0	535953..536549	-	198	18312282	-	PAE0928	-	hypothetical protein
640	 49.07	0	536546..537727	-	393	18312283	-	PAE0929	-	hypothetical protein
641	 55.74	0	537724..538089	-	121	18312284	-	PAE0929a	-	hypothetical protein
642	 51.80	0	538086..539666	-	526	18312285	-	PAE0931	-	hypothetical protein
643	 54.54	0	539775..540887	+	370	18312286	-	PAE0932	-	hypothetical protein
644	 55.96	0	540884..542125	-	413	18312287	-	PAE0933	-	hypothetical protein
645	 52.35	0	542122..542931	-	269	18312288	-	PAE0934	-	hypothetical protein
646	 47.52	0	543246..543527	-	93	18312289	-	PAE0936	-	hypothetical protein
647	 51.03	0	543795..544376	+	193	18312290	-	PAE0937	-	hypothetical protein
648	 50.48	0	544371..545309	-	312	18312291	-	PAE0938	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
649	 50.68	0	545312..547213	-	633	18312292	-	PAE0939	-	2-oxoacid ferredoxin oxidoreductase alpha subunit
650	 44.33	-1	547327..547626	-	99	18312293	-	PAE0941	-	hypothetical protein
651	 52.71	0	547614..547964	-	116	18312294	-	PAE0942	-	hypothetical protein
652	 48.56	0	547964..548206	-	80	18312295	-	PAE0943	-	hypothetical protein
653	 53.92	0	548441..549640	-	399	18312296	-	PAE0944	-	hypothetical protein
654	 40.52	-2	549647..550147	+	166	18312297	-	PAE0945	-	hypothetical protein
655	 53.99	0	550213..551253	+	346	18312298	-	PAE0946	-	carbamoyl phosphate synthase small subunit
656	 52.72	0	551243..554317	+	1024	18312299	carB	PAE0947	-	carbamoyl phosphate synthase large subunit
657	 53.58	0	554311..555105	+	264	18312300	-	PAE0948	-	ribosomal protein S6 modification protein (rimK)
658	 56.07	0	555092..556072	-	326	18312301	-	PAE0949	-	hydrogenase expression/formation protein HypE
659	 52.63	0	556099..556974	+	291	18312302	-	PAE0951	-	aminotransferase, conjectural
660	 51.95	0	556988..557551	+	187	18312303	-	PAE0952	-	hypothetical protein
661	 50.48	0	557545..558699	+	384	18312304	-	PAE0953	-	putrescine/spermidine binding protein, conjectural
662	 55.22	0	558872..560479	-	535	18312305	-	PAE0954	-	paREP2b
663	 54.05	0	560482..560592	+	36	18312306	-	PAE0955	-	paREP2a
664	 56.02	0	560623..561195	+	190	18312307	hisH	PAE0956	-	imidazole glycerol phosphate synthase subunit HisH
665	 53.03	0	561175..561570	-	131	18312308	-	PAE0957	-	phosphoribosyl-AMP cyclohydrolase
666	 54.63	0	561671..562717	+	348	18312309	-	PAE0958	-	histidinol-phosphate aminotransferase (hisC)
667	 50.00	0	562759..562860	+	33	18312310	-	PAE0959	-	paREP1, degenerate
668	 54.06	0	563219..564067	+	282	18312311	hisG	PAE0961	-	ATP phosphoribosyltransferase
669	 54.23	0	564570..565148	+	192	18312312	-	PAE0964	-	thymidylate kinase (tmk)
670	 49.09	0	565141..565635	-	164	18312313	-	PAE0965	-	hypothetical protein
671	 48.80	0	565682..566263	+	193	18312314	-	PAE0966	-	hypothetical protein
672	 53.11	0	566260..566790	-	176	18312315	-	PAE0967	-	hypothetical protein
673	 50.87	0	566787..567305	-	172	18312316	-	PAE0969	-	molybdenum cofactor biosynthesis protein (moaB)
674	 48.56	0	567322..567702	-	126	18312317	-	PAE0970	-	hypothetical protein
675	 46.58	0	567733..568215	+	160	18312318	-	PAE0971	-	hypothetical protein
676	 55.20	0	568207..569418	-	403	18312319	-	PAE0972	-	adenylosuccinate lyase (purB)
677	 51.67	0	569424..569903	-	159	18312320	-	PAE0973	-	paREP1
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.