IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
541	 48.53	0	442904..443686	+	260	18312184	-	PAE0797	-	short chain dehydrogenase
542	 46.09	-1	443675..444967	-	430	18312185	glyA	PAE0798	-	serine hydroxymethyltransferase
543	 47.21	0	444998..445732	-	244	18312186	-	PAE0799	-	molybdenum cofactor biosynthesis protein (moaC)
544	 39.70	-2	445729..446058	-	109	18312187	-	PAE0800	-	hypothetical protein
545	 52.79	0	446088..447146	-	352	18312188	-	PAE0801	-	isopentenyl pyrophosphate isomerase
546	 54.25	0	447146..447886	-	246	18312189	rpl2p	PAE0803	-	50S ribosomal protein L2P
547	 45.83	-1	448017..448232	+	71	18312190	rps17E	PAE0804	-	30S ribosomal protein S17e
548	 49.13	0	448235..448924	+	229	18312191	-	PAE0805	-	FKBP-type peptidyl-prolyl cis-trans isomerase
549	 45.32	-1	448960..449568	+	202	18312192	-	PAE0807	-	proteasome beta subunit
550	 38.32	-2	449563..449943	-	126	18312193	-	PAE0808	-	hypothetical protein
551	 52.14	0	449983..450402	-	139	18312194	-	PAE0809	-	hypothetical protein
552	 49.37	0	450552..450869	-	105	18312195	-	PAE0810	-	mutT/nudix family protein
553	 45.13	-1	450855..451049	+	64	18312196	-	PAE0811	-	hypothetical protein
554	 53.02	0	451184..452443	+	419	18312197	-	PAE0812	-	enolase
555	 49.64	0	452474..452884	+	136	18312198	-	PAE0813	-	molybdenum-pterin-binding protein, conjectural
556	 46.41	-1	452869..453801	-	310	18312199	-	PAE0814	-	molybdenum cofactor biosynthesis protein (moaA)
557	 44.86	-1	454218..455327	+	369	18312200	-	PAE0815	-	serine/threonine protein kinase, putative
558	 50.77	0	455337..455789	+	150	18312201	-	PAE0816	-	hypothetical protein
559	 47.69	0	455825..456451	+	208	18312202	rps2P	PAE0817	-	30S ribosomal protein S2
560	 48.94	0	456451..457296	+	281	18312203	-	PAE0818	-	hypothetical protein
561	 49.06	0	457293..458678	-	461	18312204	-	PAE0819	-	pyruvate kinase
562	 47.19	0	458748..460652	-	634	18312205	-	PAE0820	-	mRNA 3'-end processing factor, conjectural
563	 51.37	0	460695..462119	+	474	18312206	-	PAE0821	-	cysteinyl-tRNA synthetase
564	 52.27	0	462104..462610	-	168	18312207	-	PAE0822	-	paREP1
565	 53.21	0	462711..463721	-	336	18312208	-	PAE0824	-	hypothetical protein
566	 51.26	0	463759..467316	-	1185	18312209	-	PAE0826	-	hypothetical protein
567	 52.89	0	467363..469285	+	640	18312210	-	PAE0827	-	hypothetical protein
568	 51.63	0	469327..477306	+	2659	18312211	-	PAE0829	-	hypothetical protein
569	 53.37	0	477366..477959	+	197	18312212	-	PAE0830	-	hypothetical protein
570	 56.82	+1	477989..478780	+	263	18312213	-	PAE0831	-	hypothetical protein
571	 50.47	0	478761..479291	+	176	18312214	-	PAE0832	-	adenylate cyclase
572	 52.71	0	479299..481053	+	584	18312215	-	PAE0833	-	ATP-dependent DNA ligase
573	 49.70	0	481041..481541	-	166	18312216	-	PAE0834	-	hypothetical protein
574	 53.38	0	481582..482499	+	305	18312217	-	PAE0835	-	sugar kinase, phosphofructokinase
575	 48.83	0	482519..482860	+	113	18312218	-	PAE0836	-	hypothetical protein
576	 48.53	0	482857..483534	+	225	18312219	-	PAE0837	-	sugar-phosphate nucleotidyl transferase
577	 47.13	0	483565..484296	+	243	18312220	-	PAE0838	-	hypothetical protein
578	 45.95	-1	484293..484847	+	184	18312221	-	PAE0839	-	hypothetical protein
579	 51.71	0	484816..485196	-	126	18312222	-	PAE0840	-	hypothetical protein
580	 54.33	0	485223..486284	+	353	18312223	-	PAE0841	-	hypothetical protein
581	 51.74	0	486748..487263	+	171	18312224	-	PAE0843	-	paREP1
582	 50.33	0	487416..487568	+	50	18312225	-	PAE0845	-	paREP2a
583	 51.11	0	487555..487734	+	59	18312226	-	PAE0846	-	paREP2a
584	 63.91	+2	488323..496680	+	2785	18312227	-	PAE0850	-	paREP2b
585	 56.99	+1	496670..496855	+	61	18312228	-	PAE0852	-	paREP2b
586	 44.69	-1	497136..497408	-	90	18312229	-	PAE0855	-	hypothetical protein
587	 52.84	0	497432..498328	-	298	18312230	-	PAE0857	-	hypothetical protein
588	 43.57	-1	498341..498682	-	113	18312231	-	PAE0858	-	hypothetical protein
589	 48.08	0	499073..499384	+	103	18312232	-	PAE0862	-	50S ribosomal protein L14e
590	 49.60	0	499381..500382	+	333	18312233	-	PAE0865	-	H/ACA RNA-protein complex component Cbf5p
591	 51.36	0	500455..500748	+	97	18312234	-	PAE0866	-	hypothetical protein
592	 52.12	0	500745..501239	+	164	18312235	-	PAE0867	-	hypothetical protein
593	 47.28	0	501260..501718	+	152	18312236	-	PAE0868	-	hypothetical protein
594	 52.20	0	501715..502647	+	310	18312237	-	PAE0870	-	NAD/P oxidoreductase
595	 46.70	0	502707..503252	+	181	18312238	-	PAE0871	-	hypothetical protein
596	 50.69	0	503249..503830	-	193	18312239	-	PAE0872	-	hypothetical protein
597	 48.56	0	503859..504344	+	161	18312240	-	PAE0874	-	hypothetical protein
598	 51.19	0	504334..505134	-	266	18312241	-	PAE0875	-	competence damage-inducible protein A
599	 51.31	0	505145..506023	-	292	18312242	-	PAE0876	-	hypothetical protein
600	 51.93	0	506064..506477	+	137	18312243	-	PAE0877	-	antioxidant protein, putative
601	 50.00	0	506474..506707	+	77	18312244	-	PAE0878	-	hypothetical protein
602	 48.72	0	506676..507065	-	129	18312245	-	PAE0879	-	hypothetical protein
603	 51.34	0	507117..507788	-	223	18312246	-	PAE0880	-	DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
604	 49.28	0	507834..508322	+	162	18312247	-	PAE0882	-	hypothetical protein
605	 51.02	0	508367..509152	+	261	18312248	-	PAE0883	-	hypothetical protein
606	 48.37	0	509526..511001	+	491	18312249	-	PAE0885	-	thermostable carboxypeptidase
607	 52.58	0	510998..511636	-	212	18312250	-	PAE0886	-	hypothetical protein
608	 52.14	0	511677..512144	+	155	18312251	-	PAE0887	-	phosphopantetheine adenylyltransferase
609	 53.64	0	512115..513434	-	439	18312252	-	PAE0888	-	hypothetical protein
610	 40.52	-2	513451..513798	-	115	18312253	-	PAE0889	-	hypothetical protein
611	 50.54	0	513918..514196	+	92	18312254	-	PAE0890	-	hypothetical protein
612	 52.47	0	514177..514986	-	269	18312255	-	PAE0891	-	hypothetical protein
613	 52.28	0	515091..516035	+	314	18312256	-	PAE0893	-	chorismate mutase/prephenate dehydratase (P-protein)
614	 54.66	0	516025..518139	-	704	18312257	-	PAE0894	-	ATP-dependent, DNA binding helicase
615	 54.63	0	518173..518388	-	71	18312258	-	PAE0894a	-	hypothetical protein
616	 53.30	0	518871..520913	+	680	18312259	-	PAE0901	-	DNA replication licensing factor (mcm)
617	 51.73	0	520969..521430	+	153	18312260	-	PAE0902	-	paREP8
618	 53.82	0	521829..522077	+	82	18312261	-	PAE0903	-	hypothetical protein
619	 50.79	0	522079..522456	+	125	18312262	-	PAE0904	-	hypothetical protein
620	 57.23	+1	522435..522773	+	112	18312263	-	PAE0905	-	hypothetical protein
621	 50.97	0	522813..524048	+	411	18312264	-	PAE0906	-	paREP7
622	 52.31	0	524292..524507	-	71	18312265	-	PAE0908	-	hypothetical protein
623	 68.06	+2	524593..524664	+	23	18312266	-	PAE0908a	-	hypothetical protein
624	 41.54	-1	524767..525168	+	133	18312267	-	PAE0909	-	hypothetical protein
625	 51.22	0	525864..526232	+	122	18312268	-	PAE0910	-	hypothetical protein
626	 54.21	0	526248..526544	+	98	18312269	-	PAE0910a	-	hypothetical protein
627	 54.87	0	526519..526857	+	112	18312270	-	PAE0913	-	hypothetical protein
628	 51.90	0	526940..529723	+	927	18312271	-	PAE0915	-	hypothetical protein
629	 55.15	0	529749..530486	+	245	18312272	-	PAE0916	-	hypothetical protein
630	 58.43	+1	530491..530757	+	88	18312273	-	PAE0917	-	hypothetical protein
631	 59.09	+1	530729..531718	-	329	18312274	-	PAE0918	-	histidinol-phosphate aminotransferase (hisC)
632	 41.32	-2	531732..532307	-	191	18312275	-	PAE0920	-	paREP15, putative coiled-coil protein
633	 56.00	0	532338..533753	-	471	18312276	-	PAE0922	-	hypothetical protein
634	 53.85	0	533900..534094	+	64	18312277	-	PAE0923	-	hypothetical protein
635	 52.78	0	534081..534620	+	179	18312278	-	PAE0924	-	hypothetical protein
636	 53.47	0	534608..534895	+	95	18312279	-	PAE0925	-	hypothetical protein
637	 51.35	0	534874..535428	+	184	18312280	-	PAE0926	-	hypothetical protein
638	 48.52	0	535423..535929	-	168	18312281	-	PAE0927	-	hypothetical protein
639	 47.91	0	535953..536549	-	198	18312282	-	PAE0928	-	hypothetical protein
640	 49.07	0	536546..537727	-	393	18312283	-	PAE0929	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.