IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
473	 48.64	0	386774..388060	-	428	18312116	aspC	PAE0703	-	aspartyl-tRNA synthetase
474	 45.40	-1	388089..388610	-	173	18312117	-	PAE0705	-	transcription elongation factor NusA-like protein
475	 52.06	0	388666..390363	+	565	18312118	-	PAE0707	-	hypothetical protein
476	 46.15	-1	390344..390538	-	64	18312119	-	PAE0708	-	hypothetical protein
477	 58.13	+1	390568..390930	-	120	18312120	-	PAE0710	-	peptidyl-tRNA hydrolase
478	 53.88	0	390998..394774	+	1258	18312121	-	PAE0712	-	surface layer-associated stable protease, conjectural
479	 49.54	0	394771..395208	-	145	18312122	-	PAE0714	-	diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein)
480	 45.77	-1	395247..395849	-	200	18312123	-	PAE0715	-	hypothetical protein
481	 49.20	0	395970..397715	+	581	18312124	sdhA	PAE0716	-	succinate dehydrogenase flavoprotein subunit
482	 46.78	0	397717..398430	+	237	18312125	sdhB	PAE0717	-	succinate dehydrogenase iron-sulfur subunit
483	 48.46	0	398427..398849	+	140	18312126	-	PAE0718	-	succinate dehydrogenase cytochrome b subunit (sdhC)
484	 47.62	0	398840..399196	+	118	18312127	-	PAE0719	-	succinate dehydrogenase subunit D (sdhD)
485	 45.40	-1	399274..400044	-	256	18312128	-	PAE0720	-	proliferating-cell nuclear antigen homolog (PCNA)
486	 51.20	0	400138..401178	-	346	18312129	-	PAE0721	-	electron transfer flavoprotein alpha subunit (etfA)
487	 50.31	0	401182..401976	-	264	18312130	-	PAE0722	-	electron transfer flavoprotein beta subunit (etfB)
488	 44.67	-1	401981..402271	-	96	18312131	-	PAE0723	-	ferredoxin like protein
489	 49.73	0	402268..403542	-	424	18312132	-	PAE0725	-	electron transfer flavoprotein-quinone oxidoreductase
490	 47.10	0	403769..404458	+	229	18312133	-	PAE0727	-	molybdenum cofactor biosynthesis protein D/E
491	 45.99	-1	404439..404825	-	128	18312134	-	PAE0728	-	hypothetical protein
492	 46.98	0	404887..405663	+	258	18312135	-	PAE0729	-	hypothetical protein
493	 49.60	0	405821..406195	+	124	18312136	-	PAE0730	-	hypothetical protein
494	 41.35	-2	406222..406458	+	78	18312137	-	PAE0731	-	transcriptional regulatory protein, conjectural
495	 45.59	-1	406526..406729	+	67	18312138	-	PAE0732	-	hypothetical protein
496	 48.07	0	406763..407434	+	223	18312139	-	PAE0733	-	30S ribosomal protein S7P
497	 48.59	0	407465..408454	+	329	18312140	rfc	PAE0734	-	replication factor C small subunit
498	 46.34	-1	408454..409722	+	422	18312141	-	PAE0735	-	replication factor C large subunit
499	 26.26	-2	409722..410018	+	98	18312142	-	PAE0736	-	hypothetical protein
500	 45.98	-1	410093..411262	+	389	18312143	cdc6	PAE0737	-	cell division control protein 6
501	 48.30	0	411259..411552	+	97	18312144	-	PAE0738	-	transcriptional regulatory protein (helix-turn-helix), putative
502	 46.82	0	411569..412102	+	177	18312145	-	PAE0739	-	hypothetical protein
503	 48.50	0	412177..413277	+	366	18312146	-	PAE0741	-	translation initiation factor IF-2B subunit alpha
504	 41.19	-2	413383..413700	+	105	18312147	-	PAE0742	-	hypothetical protein
505	 47.54	0	413700..414839	+	379	18312148	-	PAE0743	-	RNA binding protein
506	 36.84	-2	414823..415050	-	75	18312149	-	PAE0744	-	hypothetical protein
507	 48.29	0	415095..415736	+	213	18312150	-	PAE0745	-	hypothetical protein
508	 45.38	-1	415842..416306	-	154	18312151	-	PAE0746	-	hypothetical protein
509	 44.44	-1	416445..416615	-	56	18312152	-	PAE0748	-	hypothetical protein
510	 44.52	-1	416680..417966	-	428	18312153	-	PAE0749	-	hypothetical protein
511	 47.02	0	417963..418751	-	262	18312154	-	PAE0750	-	hypothetical protein
512	 37.42	-2	419345..419662	+	105	18312155	-	PAE0752	-	hypothetical protein
513	 41.50	-1	419659..420687	+	342	18312156	-	PAE0753	-	H+-transporting ATP synthase subunit C (atpC)
514	 51.89	0	420689..420952	-	87	18312157	-	PAE0754	-	H+-transporting ATP synthase subunit C (atpC)
515	 30.67	-2	420967..421116	-	49	18312158	-	PAE0756	-	hypothetical protein
516	 46.33	-1	421335..421934	-	199	18312159	-	PAE0758	-	H+-transporting ATP synthase subunit D (atpD)
517	 50.97	0	421982..422758	+	258	18312160	-	PAE0759	-	GTP binding protein, conjectural
518	 41.19	-2	422781..423251	+	156	18312161	-	PAE0760	-	hypothetical protein
519	 46.67	0	423353..423907	-	184	18312162	-	PAE0762	-	hypothetical protein
520	 46.20	-1	424026..425432	+	468	18312163	-	PAE0763	-	hypothetical protein
521	 46.20	-1	425414..426703	-	429	18312164	-	PAE0764	-	phosphomannomutase (pmm)
522	 48.84	0	426817..427932	+	371	18312165	-	PAE0766	-	hypothetical protein
523	 46.17	-1	427934..428533	-	199	18312166	-	PAE0768	-	orotidine-5'-monophosphate decarboxylase (pyrF)
524	 45.53	-1	428575..429492	+	305	18312167	pyrB	PAE0770	-	aspartate carbamoyltransferase catalytic subunit
525	 46.70	0	429489..430019	+	176	18312168	-	PAE0771	-	N-acyltransferase
526	 49.15	0	430063..431592	+	509	18312169	-	PAE0772	-	hypothetical protein
527	 50.17	0	431596..433080	+	494	18312170	-	PAE0773	-	hypothetical protein
528	 49.90	0	433267..433779	+	170	18312171	-	PAE0776	-	hypothetical protein
529	 46.98	0	433813..435300	+	495	18312172	-	PAE0777	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
530	 50.63	0	435361..436077	-	238	18312173	-	PAE0779	-	hypothetical protein
531	 44.25	-1	436074..436586	-	170	18312174	-	PAE0781	-	hypothetical protein
532	 46.77	0	436657..437817	-	386	18312175	-	PAE0782	-	hypothetical protein
533	 50.21	0	437807..438292	-	161	18312176	-	PAE0783	-	helix-turn-helix protein
534	 48.98	0	438301..438792	+	163	18312177	-	PAE0786	-	hypothetical protein
535	 42.27	-1	439023..439313	-	96	18312178	-	PAE0789	-	hypothetical protein
536	 43.62	-1	439522..439764	+	80	18312179	-	PAE0790	-	small nuclear ribonucleoprotein homolog (Sm-like)
537	 47.10	0	439982..440584	+	200	18312180	-	PAE0791	-	hypothetical protein
538	 48.92	0	440597..441520	+	307	18312181	-	PAE0793	-	hypothetical protein
539	 46.88	0	441514..441897	-	127	18312182	-	PAE0794	-	cytidine deaminase
540	 43.45	-1	441935..442873	+	312	18312183	-	PAE0796	-	hypothetical protein
541	 48.53	0	442904..443686	+	260	18312184	-	PAE0797	-	short chain dehydrogenase
542	 46.09	-1	443675..444967	-	430	18312185	glyA	PAE0798	-	serine hydroxymethyltransferase
543	 47.21	0	444998..445732	-	244	18312186	-	PAE0799	-	molybdenum cofactor biosynthesis protein (moaC)
544	 39.70	-2	445729..446058	-	109	18312187	-	PAE0800	-	hypothetical protein
545	 52.79	0	446088..447146	-	352	18312188	-	PAE0801	-	isopentenyl pyrophosphate isomerase
546	 54.25	0	447146..447886	-	246	18312189	rpl2p	PAE0803	-	50S ribosomal protein L2P
547	 45.83	-1	448017..448232	+	71	18312190	rps17E	PAE0804	-	30S ribosomal protein S17e
548	 49.13	0	448235..448924	+	229	18312191	-	PAE0805	-	FKBP-type peptidyl-prolyl cis-trans isomerase
549	 45.32	-1	448960..449568	+	202	18312192	-	PAE0807	-	proteasome beta subunit
550	 38.32	-2	449563..449943	-	126	18312193	-	PAE0808	-	hypothetical protein
551	 52.14	0	449983..450402	-	139	18312194	-	PAE0809	-	hypothetical protein
552	 49.37	0	450552..450869	-	105	18312195	-	PAE0810	-	mutT/nudix family protein
553	 45.13	-1	450855..451049	+	64	18312196	-	PAE0811	-	hypothetical protein
554	 53.02	0	451184..452443	+	419	18312197	-	PAE0812	-	enolase
555	 49.64	0	452474..452884	+	136	18312198	-	PAE0813	-	molybdenum-pterin-binding protein, conjectural
556	 46.41	-1	452869..453801	-	310	18312199	-	PAE0814	-	molybdenum cofactor biosynthesis protein (moaA)
557	 44.86	-1	454218..455327	+	369	18312200	-	PAE0815	-	serine/threonine protein kinase, putative
558	 50.77	0	455337..455789	+	150	18312201	-	PAE0816	-	hypothetical protein
559	 47.69	0	455825..456451	+	208	18312202	rps2P	PAE0817	-	30S ribosomal protein S2
560	 48.94	0	456451..457296	+	281	18312203	-	PAE0818	-	hypothetical protein
561	 49.06	0	457293..458678	-	461	18312204	-	PAE0819	-	pyruvate kinase
562	 47.19	0	458748..460652	-	634	18312205	-	PAE0820	-	mRNA 3'-end processing factor, conjectural
563	 51.37	0	460695..462119	+	474	18312206	-	PAE0821	-	cysteinyl-tRNA synthetase
564	 52.27	0	462104..462610	-	168	18312207	-	PAE0822	-	paREP1
565	 53.21	0	462711..463721	-	336	18312208	-	PAE0824	-	hypothetical protein
566	 51.26	0	463759..467316	-	1185	18312209	-	PAE0826	-	hypothetical protein
567	 52.89	0	467363..469285	+	640	18312210	-	PAE0827	-	hypothetical protein
568	 51.63	0	469327..477306	+	2659	18312211	-	PAE0829	-	hypothetical protein
569	 53.37	0	477366..477959	+	197	18312212	-	PAE0830	-	hypothetical protein
570	 56.82	+1	477989..478780	+	263	18312213	-	PAE0831	-	hypothetical protein
571	 50.47	0	478761..479291	+	176	18312214	-	PAE0832	-	adenylate cyclase
572	 52.71	0	479299..481053	+	584	18312215	-	PAE0833	-	ATP-dependent DNA ligase
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.