IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
395	 53.77	0	321558..322751	-	397	18312038	-	PAE0601	-	glutamyl tRNA reductase (hemA)
396	 50.00	0	322879..322956	-	25	18312039	-	PAE0602a	-	hypothetical protein
397	 51.20	0	323299..324339	+	346	18312040	purP	PAE0604	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
398	 53.25	0	324319..324549	-	76	18312041	-	PAE0605	-	hypothetical protein
399	 52.17	0	324596..325423	-	275	18312042	-	PAE0606	-	oxidoreductase, conjectural
400	 50.10	0	325463..326488	-	341	18312043	purP	PAE0608	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
401	 46.00	-1	326856..327368	+	170	18312044	-	PAE0611	-	hypothetical protein
402	 49.79	0	327449..327685	-	78	18312045	-	PAE0612	-	hypothetical protein
403	 51.95	0	327661..328326	-	221	18312046	-	PAE0613	-	hypothetical protein
404	 55.43	0	328374..329423	+	349	18312047	-	PAE0614	-	hypothetical protein
405	 55.65	0	329401..331089	-	562	18312048	-	PAE0615	-	dihydroxy-acid dehydratase
406	 52.83	0	331120..332160	-	346	18312049	-	PAE0616	-	metallo cofactor biosynthesis protein
407	 54.76	0	332161..332664	-	167	18312050	-	PAE0617	-	oxidoreductase, truncation
408	 50.44	0	332799..333137	-	112	18312051	-	PAE0620	-	hypothetical protein
409	 51.79	0	333345..335192	+	615	18312052	-	PAE0622	-	aldehyde ferredoxin oxidoreductase (aor)
410	 49.86	0	335264..335989	+	241	18312053	-	PAE0624	-	hypothetical protein
411	 49.40	0	335986..336321	+	111	18312054	-	PAE0626	-	hypothetical protein
412	 52.61	0	336309..336998	-	229	18312055	-	PAE0627	-	hypothetical protein
413	 50.90	0	337019..337519	-	166	18312056	-	PAE0628	-	hypothetical protein
414	 49.06	0	337562..338680	+	372	18312057	-	PAE0630	-	tyrosyl-tRNA synthetase
415	 47.31	0	338839..340269	-	476	18312058	-	PAE0632	-	hypothetical protein
416	 51.92	0	340308..341372	+	354	18312059	-	PAE0634	-	hypothetical protein
417	 49.68	0	341448..341759	-	103	18312060	-	PAE0635	-	hypothetical protein
418	 54.12	0	341851..342687	+	278	18312061	-	PAE0636	-	hypothetical protein
419	 52.98	0	342684..343706	-	340	18312062	-	PAE0637	-	peptidase ( proline dipeptidase)
420	 47.47	0	343729..344103	-	124	18312063	-	PAE0638	-	hypothetical protein
421	 50.81	0	344148..344639	+	163	18312064	-	PAE0639	-	hypothetical protein
422	 51.41	0	344633..344986	+	117	18312065	-	PAE0640	-	hypothetical protein
423	 48.81	0	344961..345380	-	139	18312066	-	PAE0641	-	hypothetical protein
424	 52.61	0	345590..346087	+	165	18312067	-	PAE0643	-	hypothetical protein
425	 49.07	0	346066..346656	-	196	18312068	-	PAE0644	-	hypothetical protein
426	 49.72	0	346669..347547	+	292	18312069	-	PAE0645	-	ribosomal protein S6 modification protein (rimK)
427	 44.91	-1	347756..347971	-	71	18312070	-	PAE0648	-	paREP10
428	 45.74	-1	347965..348633	-	222	18312071	-	PAE0649	-	hypothetical protein
429	 54.48	0	348706..349296	+	196	18312072	-	PAE0651	-	uracil DNA glycosylase (PA-UDGa)
430	 48.99	0	349320..350207	+	295	18312073	-	PAE0652	-	hypothetical protein
431	 50.09	0	350204..351814	+	536	18312074	-	PAE0653	-	hypothetical protein
432	 50.90	0	351906..352907	+	333	18312075	radA	PAE0654	-	DNA repair and recombination protein RadA
433	 51.17	0	352853..353491	-	212	18312076	-	PAE0655	-	hypothetical protein
434	 50.47	0	353595..355193	+	532	18312077	-	PAE0656	-	hypothetical protein
435	 51.30	0	355161..355622	-	153	18312078	-	PAE0658	-	hypothetical protein
436	 45.08	-1	355668..355982	+	104	18312079	-	PAE0659	-	hypothetical protein
437	 49.90	0	355982..356476	+	164	18312080	-	PAE0660	-	hypothetical protein
438	 45.02	-1	356507..356797	+	96	18312081	-	PAE0661	-	H+-transporting ATP synthase subunit F (atpF)
439	 44.27	-1	356827..357393	+	188	18312082	-	PAE0662	-	hypothetical protein
440	 54.49	0	357390..359171	+	593	18312083	-	PAE0663	-	V-type ATP synthase subunit A
441	 56.58	+1	359243..359470	+	75	18312084	rpoH	PAE0664	-	DNA-directed RNA polymerase subunit H
442	 51.03	0	359505..362888	+	1127	18312085	-	PAE0665	-	DNA-directed RNA polymerase subunit beta
443	 51.26	0	362969..365623	+	884	18312086	-	PAE0666	-	DNA-directed RNA polymerase subunit alpha
444	 47.81	0	365620..366759	+	379	18312087	-	PAE0667	-	DNA-directed RNA polymerase subunit A''
445	 48.22	0	366801..367109	+	102	18312088	-	PAE0668	-	ribosomal protein L30
446	 48.28	0	367102..367536	+	144	18312089	nusA	PAE0669	-	transcription elongation factor NusA-like protein
447	 52.48	0	367576..368019	+	147	18312090	rps12P	PAE0670	-	30S ribosomal protein S12P
448	 44.06	-1	368019..368801	+	260	18312091	-	PAE0671	-	DNA-directed RNA polymerase subunit D (rpoD)
449	 47.70	0	368827..369195	+	122	18312092	-	PAE0672	-	50S ribosomal protein L18e
450	 46.99	0	369192..369755	+	187	18312093	-	PAE0673	-	ribosomal protein L13
451	 50.11	0	369758..370198	+	146	18312094	rps9p	PAE0674	-	30S ribosomal protein S9P
452	 49.25	0	370195..370395	+	66	18312095	-	PAE0675a	-	DNA-directed RNA polymerase subunit N
453	 46.51	0	370446..370703	+	85	18312096	-	PAE0676	-	small nuclear ribonucleoprotein homolog (Sm-like)
454	 45.49	-1	370700..371908	+	402	18312097	-	PAE0677	-	S-adenosylmethionine synthetase
455	 46.03	-1	371905..373668	-	587	18312098	-	PAE0678	-	hypothetical protein
456	 45.28	-1	373672..374592	-	306	18312099	-	PAE0680	-	hypothetical protein
457	 52.98	0	374624..375127	+	167	18312100	-	PAE0681	-	hypothetical protein
458	 44.40	-1	375280..375966	+	228	18312101	-	PAE0683	-	cytidyltransferase
459	 52.01	0	375947..376594	+	215	18312102	-	PAE0684	-	DNA endonuclease V, conjectural
460	 50.75	0	376559..376960	-	133	18312103	-	PAE0685	-	hypothetical protein
461	 49.00	0	376969..377772	-	267	18312104	-	PAE0686	-	multiple sugar transport permease protein
462	 37.09	-2	377769..378593	-	274	18312105	-	PAE0688	-	multiple sugar transport permease protein
463	 50.74	0	378590..380002	-	470	18312106	-	PAE0689	-	multiple sugar binding protein
464	 58.33	+1	380353..380580	-	75	18312107	-	PAE0692	-	hypothetical protein
465	 55.56	0	381568..381765	+	65	18312108	-	PAE0694	-	hypothetical protein
466	 44.80	-1	381814..382092	+	92	18312109	-	PAE0695	-	translation elongation factor aEF-1 beta subunit
467	 51.18	0	382129..384324	+	731	18312110	-	PAE0696	-	AAA family ATPase, CDC48 subfamily protein
468	 42.79	-1	384321..384542	+	73	18312111	-	PAE0697	-	hypothetical protein
469	 50.24	0	384568..385608	+	346	18312112	-	PAE0698	-	flap endonuclease-1
470	 42.86	-1	385708..385875	+	55	18312113	-	PAE0700	-	hypothetical protein
471	 51.29	0	385857..386474	+	205	18312114	-	PAE0701	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
472	 44.71	-1	386523..386777	+	84	18312115	-	PAE0702	-	hypothetical protein
473	 48.64	0	386774..388060	-	428	18312116	aspC	PAE0703	-	aspartyl-tRNA synthetase
474	 45.40	-1	388089..388610	-	173	18312117	-	PAE0705	-	transcription elongation factor NusA-like protein
475	 52.06	0	388666..390363	+	565	18312118	-	PAE0707	-	hypothetical protein
476	 46.15	-1	390344..390538	-	64	18312119	-	PAE0708	-	hypothetical protein
477	 58.13	+1	390568..390930	-	120	18312120	-	PAE0710	-	peptidyl-tRNA hydrolase
478	 53.88	0	390998..394774	+	1258	18312121	-	PAE0712	-	surface layer-associated stable protease, conjectural
479	 49.54	0	394771..395208	-	145	18312122	-	PAE0714	-	diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein)
480	 45.77	-1	395247..395849	-	200	18312123	-	PAE0715	-	hypothetical protein
481	 49.20	0	395970..397715	+	581	18312124	sdhA	PAE0716	-	succinate dehydrogenase flavoprotein subunit
482	 46.78	0	397717..398430	+	237	18312125	sdhB	PAE0717	-	succinate dehydrogenase iron-sulfur subunit
483	 48.46	0	398427..398849	+	140	18312126	-	PAE0718	-	succinate dehydrogenase cytochrome b subunit (sdhC)
484	 47.62	0	398840..399196	+	118	18312127	-	PAE0719	-	succinate dehydrogenase subunit D (sdhD)
485	 45.40	-1	399274..400044	-	256	18312128	-	PAE0720	-	proliferating-cell nuclear antigen homolog (PCNA)
486	 51.20	0	400138..401178	-	346	18312129	-	PAE0721	-	electron transfer flavoprotein alpha subunit (etfA)
487	 50.31	0	401182..401976	-	264	18312130	-	PAE0722	-	electron transfer flavoprotein beta subunit (etfB)
488	 44.67	-1	401981..402271	-	96	18312131	-	PAE0723	-	ferredoxin like protein
489	 49.73	0	402268..403542	-	424	18312132	-	PAE0725	-	electron transfer flavoprotein-quinone oxidoreductase
490	 47.10	0	403769..404458	+	229	18312133	-	PAE0727	-	molybdenum cofactor biosynthesis protein D/E
491	 45.99	-1	404439..404825	-	128	18312134	-	PAE0728	-	hypothetical protein
492	 46.98	0	404887..405663	+	258	18312135	-	PAE0729	-	hypothetical protein
493	 49.60	0	405821..406195	+	124	18312136	-	PAE0730	-	hypothetical protein
494	 41.35	-2	406222..406458	+	78	18312137	-	PAE0731	-	transcriptional regulatory protein, conjectural
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.