IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
350	 55.32	0	282999..283562	-	187	18311993	-	PAE0527	-	paREP1
351	 48.43	0	284293..284643	+	116	18311994	-	PAE0531	-	hypothetical protein
352	 53.70	0	284660..284875	-	71	18311995	-	PAE0532	-	hypothetical protein
353	 49.20	0	284869..285303	-	144	18311996	-	PAE0534	-	hypothetical protein
354	 51.95	0	285455..286018	+	187	18311997	-	PAE0536	-	hypothetical protein
355	 47.62	0	286156..286281	+	41	18311998	-	PAE0538	-	hypothetical protein
356	 40.24	-2	286523..287941	-	472	18311999	-	PAE0539	-	hypothetical protein
357	 41.52	-1	287989..289197	+	402	18312000	-	PAE0540	-	glycosyltransferase (type 1)
358	 39.15	-2	289194..290345	+	383	18312001	-	PAE0541	-	glycosyltransferase (type 1)
359	 39.50	-2	290342..291508	+	388	18312002	-	PAE0542	-	glycosyltransferase (type 1)
360	 37.87	-2	291498..292664	-	388	18312003	-	PAE0543	-	glycosyltransferase (type 1)
361	 38.91	-2	292661..293611	-	316	18312004	-	PAE0544	-	glycosyltransferase (type 2)
362	 32.29	-2	293608..294663	-	351	18312005	-	PAE0545	-	hypothetical protein
363	 57.71	+1	294660..295943	-	427	18312006	-	PAE0546	-	hypothetical protein
364	 57.89	+1	296071..296583	-	170	18312007	-	PAE0548	-	paREP7
365	 53.05	0	297210..297422	+	70	18312008	-	PAE0550	-	paREP7
366	 58.62	+1	297425..297511	+	28	18312009	-	PAE0551	-	hypothetical protein
367	 48.97	0	297519..297857	+	112	18312010	-	PAE0552	-	hypothetical protein
368	 52.87	0	298492..298839	+	115	18312011	-	PAE0555	-	hypothetical protein
369	 46.91	0	298884..300179	+	431	18312012	-	PAE0556	-	amino acid permease
370	 70.10	+2	300890..301762	+	290	18312013	-	PAE0558	-	hypothetical protein
371	 64.97	+2	301759..301935	-	58	18312014	-	PAE0559	-	hypothetical protein
372	 56.74	+1	302385..302807	-	140	18312015	-	PAE0562	-	paREP8
373	 55.36	0	302854..303366	-	170	18312016	-	PAE0563	-	ADP ribose hydrolase, putative (mutT/nudix family protein)
374	 55.10	0	303850..304809	+	319	18312017	-	PAE0564	-	hypothetical protein
375	 53.89	0	304862..305839	+	325	18312018	-	PAE0566	-	hypothetical protein
376	 54.17	0	305869..306156	+	95	18312019	-	PAE0567	-	hypothetical protein
377	 53.12	0	306065..307024	-	319	18312020	-	PAE0568	-	cation efflux system protein, conjectural
378	 54.27	0	307026..307775	-	249	18312021	-	PAE0570	-	indole-3-glycerol-phosphate synthase
379	 52.94	0	307829..308491	+	220	18312022	-	PAE0573	-	hypothetical protein
380	 53.81	0	308481..309281	-	266	18312023	uppP	PAE0576	-	undecaprenyl pyrophosphate phosphatase
381	 51.90	0	309321..309794	+	157	18312024	-	PAE0577	-	hypothetical protein
382	 51.60	0	310028..311182	+	384	18312025	-	PAE0579	-	metallo cofactor biosynthesis protein
383	 55.70	0	311160..312053	+	297	18312026	-	PAE0580	-	porphobilinogen deaminase (hemC)
384	 49.79	0	312057..313028	-	323	18312027	-	PAE0581	-	heme biosynthesis protein
385	 54.01	0	313492..314502	-	336	18312028	-	PAE0583	-	delta-aminolevulinic acid dehydratase
386	 53.42	0	314499..315155	-	218	18312029	-	PAE0585	-	siroheme synthesis protein, conjectural
387	 47.78	0	315183..315362	-	59	18312030	-	PAE0586	-	hypothetical protein
388	 53.99	0	315403..316041	-	212	18312031	-	PAE0589	-	hypothetical protein
389	 55.37	0	316023..316748	-	241	18312032	-	PAE0590	-	uroporphyrin-III C-methyltransferase
390	 54.09	0	316934..318205	+	423	18312033	-	PAE0594	-	glutamate-1-semialdehyde aminotransferase (hemL)
391	 53.53	0	318209..319327	+	372	18312034	-	PAE0596	-	metallo cofactor biosynthesis protein
392	 47.97	0	319683..319928	+	81	18312035	-	PAE0597	-	hypothetical protein
393	 55.50	0	319958..320539	+	193	18312036	-	PAE0598	-	hypothetical protein
394	 52.47	0	320793..321581	+	262	18312037	-	PAE0600	-	hypothetical protein
395	 53.77	0	321558..322751	-	397	18312038	-	PAE0601	-	glutamyl tRNA reductase (hemA)
396	 50.00	0	322879..322956	-	25	18312039	-	PAE0602a	-	hypothetical protein
397	 51.20	0	323299..324339	+	346	18312040	purP	PAE0604	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein
398	 53.25	0	324319..324549	-	76	18312041	-	PAE0605	-	hypothetical protein
399	 52.17	0	324596..325423	-	275	18312042	-	PAE0606	-	oxidoreductase, conjectural
400	 50.10	0	325463..326488	-	341	18312043	purP	PAE0608	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
401	 46.00	-1	326856..327368	+	170	18312044	-	PAE0611	-	hypothetical protein
402	 49.79	0	327449..327685	-	78	18312045	-	PAE0612	-	hypothetical protein
403	 51.95	0	327661..328326	-	221	18312046	-	PAE0613	-	hypothetical protein
404	 55.43	0	328374..329423	+	349	18312047	-	PAE0614	-	hypothetical protein
405	 55.65	0	329401..331089	-	562	18312048	-	PAE0615	-	dihydroxy-acid dehydratase
406	 52.83	0	331120..332160	-	346	18312049	-	PAE0616	-	metallo cofactor biosynthesis protein
407	 54.76	0	332161..332664	-	167	18312050	-	PAE0617	-	oxidoreductase, truncation
408	 50.44	0	332799..333137	-	112	18312051	-	PAE0620	-	hypothetical protein
409	 51.79	0	333345..335192	+	615	18312052	-	PAE0622	-	aldehyde ferredoxin oxidoreductase (aor)
410	 49.86	0	335264..335989	+	241	18312053	-	PAE0624	-	hypothetical protein
411	 49.40	0	335986..336321	+	111	18312054	-	PAE0626	-	hypothetical protein
412	 52.61	0	336309..336998	-	229	18312055	-	PAE0627	-	hypothetical protein
413	 50.90	0	337019..337519	-	166	18312056	-	PAE0628	-	hypothetical protein
414	 49.06	0	337562..338680	+	372	18312057	-	PAE0630	-	tyrosyl-tRNA synthetase
415	 47.31	0	338839..340269	-	476	18312058	-	PAE0632	-	hypothetical protein
416	 51.92	0	340308..341372	+	354	18312059	-	PAE0634	-	hypothetical protein
417	 49.68	0	341448..341759	-	103	18312060	-	PAE0635	-	hypothetical protein
418	 54.12	0	341851..342687	+	278	18312061	-	PAE0636	-	hypothetical protein
419	 52.98	0	342684..343706	-	340	18312062	-	PAE0637	-	peptidase ( proline dipeptidase)
420	 47.47	0	343729..344103	-	124	18312063	-	PAE0638	-	hypothetical protein
421	 50.81	0	344148..344639	+	163	18312064	-	PAE0639	-	hypothetical protein
422	 51.41	0	344633..344986	+	117	18312065	-	PAE0640	-	hypothetical protein
423	 48.81	0	344961..345380	-	139	18312066	-	PAE0641	-	hypothetical protein
424	 52.61	0	345590..346087	+	165	18312067	-	PAE0643	-	hypothetical protein
425	 49.07	0	346066..346656	-	196	18312068	-	PAE0644	-	hypothetical protein
426	 49.72	0	346669..347547	+	292	18312069	-	PAE0645	-	ribosomal protein S6 modification protein (rimK)
427	 44.91	-1	347756..347971	-	71	18312070	-	PAE0648	-	paREP10
428	 45.74	-1	347965..348633	-	222	18312071	-	PAE0649	-	hypothetical protein
429	 54.48	0	348706..349296	+	196	18312072	-	PAE0651	-	uracil DNA glycosylase (PA-UDGa)
430	 48.99	0	349320..350207	+	295	18312073	-	PAE0652	-	hypothetical protein
431	 50.09	0	350204..351814	+	536	18312074	-	PAE0653	-	hypothetical protein
432	 50.90	0	351906..352907	+	333	18312075	radA	PAE0654	-	DNA repair and recombination protein RadA
433	 51.17	0	352853..353491	-	212	18312076	-	PAE0655	-	hypothetical protein
434	 50.47	0	353595..355193	+	532	18312077	-	PAE0656	-	hypothetical protein
435	 51.30	0	355161..355622	-	153	18312078	-	PAE0658	-	hypothetical protein
436	 45.08	-1	355668..355982	+	104	18312079	-	PAE0659	-	hypothetical protein
437	 49.90	0	355982..356476	+	164	18312080	-	PAE0660	-	hypothetical protein
438	 45.02	-1	356507..356797	+	96	18312081	-	PAE0661	-	H+-transporting ATP synthase subunit F (atpF)
439	 44.27	-1	356827..357393	+	188	18312082	-	PAE0662	-	hypothetical protein
440	 54.49	0	357390..359171	+	593	18312083	-	PAE0663	-	V-type ATP synthase subunit A
441	 56.58	+1	359243..359470	+	75	18312084	rpoH	PAE0664	-	DNA-directed RNA polymerase subunit H
442	 51.03	0	359505..362888	+	1127	18312085	-	PAE0665	-	DNA-directed RNA polymerase subunit beta
443	 51.26	0	362969..365623	+	884	18312086	-	PAE0666	-	DNA-directed RNA polymerase subunit alpha
444	 47.81	0	365620..366759	+	379	18312087	-	PAE0667	-	DNA-directed RNA polymerase subunit A''
445	 48.22	0	366801..367109	+	102	18312088	-	PAE0668	-	ribosomal protein L30
446	 48.28	0	367102..367536	+	144	18312089	nusA	PAE0669	-	transcription elongation factor NusA-like protein
447	 52.48	0	367576..368019	+	147	18312090	rps12P	PAE0670	-	30S ribosomal protein S12P
448	 44.06	-1	368019..368801	+	260	18312091	-	PAE0671	-	DNA-directed RNA polymerase subunit D (rpoD)
449	 47.70	0	368827..369195	+	122	18312092	-	PAE0672	-	50S ribosomal protein L18e
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.