IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
297	 67.87	+2	236871..237203	-	110	18311940	-	PAE0434	-	hypothetical protein
298	 69.34	+2	237185..237970	-	261	18311941	-	PAE0435	-	hypothetical protein
299	 67.53	+2	237967..239244	-	425	18311942	-	PAE0436	-	hypothetical protein
300	 59.75	+1	239296..240480	+	394	18311943	-	PAE0437	-	glycosyltransferase (type 2)
301	 59.10	+1	240552..240908	+	118	18311944	-	PAE0438	-	hypothetical protein
302	 45.09	-1	241225..242160	+	311	18311945	-	PAE0439	-	dolichol-phosphate mannosyltransferase
303	 52.26	0	242168..243250	+	360	18311946	-	PAE0440	-	glycosyltransferase (type 1)
304	 38.44	-2	243247..244068	+	273	18311947	-	PAE0441	-	glycosyltransferase (type 2)
305	 34.49	-2	244436..245560	+	374	18311948	-	PAE0442	-	glycosyltransferase (type 1)
306	 38.75	-2	245595..246314	+	239	18311949	-	PAE0443	-	hypothetical protein
307	 41.75	-1	246298..249042	+	914	18311950	-	PAE0445	-	hypothetical protein
308	 51.69	0	249094..249921	+	275	18311951	-	PAE0446	-	glycosyltransferase (type 2)
309	 59.74	+1	251058..252212	-	384	18311952	-	PAE0455	-	hypothetical protein
310	 50.39	0	252334..252462	+	42	18311953	-	PAE0457	-	hypothetical protein
311	 52.94	0	252540..252743	+	67	18311954	-	PAE0458	-	hypothetical protein
312	 48.91	0	252772..254286	+	504	18311955	-	PAE0459	-	hypothetical protein
313	 46.50	0	255103..255459	+	118	18311956	-	PAE0462	-	hypothetical protein
314	 49.69	0	255493..256293	+	266	18311957	-	PAE0463	-	hypothetical protein
315	 54.12	0	256569..257102	+	177	18311958	-	PAE0465	-	hypothetical protein
316	 45.28	-1	257226..258146	+	306	18311959	-	PAE0466	-	hypothetical protein
317	 42.48	-1	258622..258960	-	112	18311960	-	PAE0467	-	glycosyltransferase (type 1)
318	 42.72	-1	259081..259293	-	70	18311961	-	PAE0468	-	hypothetical protein
319	 47.31	0	259434..259526	-	30	18311962	-	PAE0469	-	hypothetical protein
320	 51.52	0	259516..259680	+	54	18311963	-	PAE0470	-	hypothetical protein
321	 50.98	0	259809..259961	+	50	18311964	-	PAE0471	-	hypothetical protein
322	 51.59	0	260079..260423	+	114	18311965	-	PAE0473	-	hypothetical protein
323	 54.55	0	260877..260975	-	32	18311966	-	PAE0475	-	hypothetical protein
324	 50.00	0	261049..261144	-	31	18311967	-	PAE0476	-	hypothetical protein
325	 52.55	0	261302..261634	+	110	18311968	-	PAE0477	-	hypothetical protein
326	 55.85	0	261627..264002	+	791	18311969	-	PAE0478	-	hypothetical protein
327	 51.59	0	264309..264434	-	41	18311970	-	PAE0479	-	hypothetical protein
328	 45.48	-1	264825..265244	-	139	18311971	-	PAE0481	-	paREP15, putative coiled-coil protein
329	 44.68	-1	265267..265407	-	46	18311972	-	PAE0482	-	hypothetical protein
330	 56.48	0	266150..266257	+	35	18311973	-	PAE0485	-	hypothetical protein
331	 52.32	0	266293..266529	+	78	18311974	-	PAE0486	-	paREP8
332	 64.96	+2	267069..267302	+	77	18311975	-	PAE0487	-	hypothetical protein
333	 58.85	+1	267650..268186	-	178	18311976	-	PAE0489	-	paREP1
334	 63.49	+2	268243..268494	+	83	18311977	-	PAE0490	-	hypothetical protein
335	 44.22	-1	268704..269144	+	146	18311978	-	PAE0492	-	paREP15, putative coiled-coil protein
336	 46.78	0	270282..270452	+	56	18311979	-	PAE0496	-	hypothetical protein
337	 54.22	0	270814..271062	+	82	18311980	-	PAE0497	-	hypothetical protein
338	 43.59	-1	271218..271451	+	77	18311981	-	PAE0498	-	hypothetical protein
339	 42.65	-1	271587..271790	+	67	18311982	-	PAE0499	-	hypothetical protein
340	 49.56	0	273325..273663	+	112	18311983	-	PAE0505	-	hypothetical protein
341	 43.58	-1	273975..274706	+	243	18311984	-	PAE0506	-	paREP15, putative coiled-coil protein
342	 46.45	-1	275620..275802	+	60	18311985	-	PAE0507	-	hypothetical protein
343	 59.79	+1	276135..276323	+	62	18311986	-	PAE0510	-	hypothetical protein
344	 53.33	0	276685..277419	-	244	18311987	-	PAE0512	-	hypothetical protein
345	 48.52	0	277542..278759	-	405	18311988	-	PAE0513	-	hypothetical protein
346	 48.11	0	278747..279382	-	211	18311989	-	PAE0514	-	hypothetical protein
347	 57.31	+1	279434..280438	-	334	18311990	-	PAE0515	-	hypothetical protein
348	 55.56	0	281068..281526	-	152	18311991	-	PAE0518	-	hypothetical protein
349	 40.13	-2	281977..282447	+	156	18311992	-	PAE0522	-	paREP15, putative coiled-coil protein
350	 55.32	0	282999..283562	-	187	18311993	-	PAE0527	-	paREP1
351	 48.43	0	284293..284643	+	116	18311994	-	PAE0531	-	hypothetical protein
352	 53.70	0	284660..284875	-	71	18311995	-	PAE0532	-	hypothetical protein
353	 49.20	0	284869..285303	-	144	18311996	-	PAE0534	-	hypothetical protein
354	 51.95	0	285455..286018	+	187	18311997	-	PAE0536	-	hypothetical protein
355	 47.62	0	286156..286281	+	41	18311998	-	PAE0538	-	hypothetical protein
356	 40.24	-2	286523..287941	-	472	18311999	-	PAE0539	-	hypothetical protein
357	 41.52	-1	287989..289197	+	402	18312000	-	PAE0540	-	glycosyltransferase (type 1)
358	 39.15	-2	289194..290345	+	383	18312001	-	PAE0541	-	glycosyltransferase (type 1)
359	 39.50	-2	290342..291508	+	388	18312002	-	PAE0542	-	glycosyltransferase (type 1)
360	 37.87	-2	291498..292664	-	388	18312003	-	PAE0543	-	glycosyltransferase (type 1)
361	 38.91	-2	292661..293611	-	316	18312004	-	PAE0544	-	glycosyltransferase (type 2)
362	 32.29	-2	293608..294663	-	351	18312005	-	PAE0545	-	hypothetical protein
363	 57.71	+1	294660..295943	-	427	18312006	-	PAE0546	-	hypothetical protein
364	 57.89	+1	296071..296583	-	170	18312007	-	PAE0548	-	paREP7
365	 53.05	0	297210..297422	+	70	18312008	-	PAE0550	-	paREP7
366	 58.62	+1	297425..297511	+	28	18312009	-	PAE0551	-	hypothetical protein
367	 48.97	0	297519..297857	+	112	18312010	-	PAE0552	-	hypothetical protein
368	 52.87	0	298492..298839	+	115	18312011	-	PAE0555	-	hypothetical protein
369	 46.91	0	298884..300179	+	431	18312012	-	PAE0556	-	amino acid permease
370	 70.10	+2	300890..301762	+	290	18312013	-	PAE0558	-	hypothetical protein
371	 64.97	+2	301759..301935	-	58	18312014	-	PAE0559	-	hypothetical protein
372	 56.74	+1	302385..302807	-	140	18312015	-	PAE0562	-	paREP8
373	 55.36	0	302854..303366	-	170	18312016	-	PAE0563	-	ADP ribose hydrolase, putative (mutT/nudix family protein)
374	 55.10	0	303850..304809	+	319	18312017	-	PAE0564	-	hypothetical protein
375	 53.89	0	304862..305839	+	325	18312018	-	PAE0566	-	hypothetical protein
376	 54.17	0	305869..306156	+	95	18312019	-	PAE0567	-	hypothetical protein
377	 53.12	0	306065..307024	-	319	18312020	-	PAE0568	-	cation efflux system protein, conjectural
378	 54.27	0	307026..307775	-	249	18312021	-	PAE0570	-	indole-3-glycerol-phosphate synthase
379	 52.94	0	307829..308491	+	220	18312022	-	PAE0573	-	hypothetical protein
380	 53.81	0	308481..309281	-	266	18312023	uppP	PAE0576	-	undecaprenyl pyrophosphate phosphatase
381	 51.90	0	309321..309794	+	157	18312024	-	PAE0577	-	hypothetical protein
382	 51.60	0	310028..311182	+	384	18312025	-	PAE0579	-	metallo cofactor biosynthesis protein
383	 55.70	0	311160..312053	+	297	18312026	-	PAE0580	-	porphobilinogen deaminase (hemC)
384	 49.79	0	312057..313028	-	323	18312027	-	PAE0581	-	heme biosynthesis protein
385	 54.01	0	313492..314502	-	336	18312028	-	PAE0583	-	delta-aminolevulinic acid dehydratase
386	 53.42	0	314499..315155	-	218	18312029	-	PAE0585	-	siroheme synthesis protein, conjectural
387	 47.78	0	315183..315362	-	59	18312030	-	PAE0586	-	hypothetical protein
388	 53.99	0	315403..316041	-	212	18312031	-	PAE0589	-	hypothetical protein
389	 55.37	0	316023..316748	-	241	18312032	-	PAE0590	-	uroporphyrin-III C-methyltransferase
390	 54.09	0	316934..318205	+	423	18312033	-	PAE0594	-	glutamate-1-semialdehyde aminotransferase (hemL)
391	 53.53	0	318209..319327	+	372	18312034	-	PAE0596	-	metallo cofactor biosynthesis protein
392	 47.97	0	319683..319928	+	81	18312035	-	PAE0597	-	hypothetical protein
393	 55.50	0	319958..320539	+	193	18312036	-	PAE0598	-	hypothetical protein
394	 52.47	0	320793..321581	+	262	18312037	-	PAE0600	-	hypothetical protein
395	 53.77	0	321558..322751	-	397	18312038	-	PAE0601	-	glutamyl tRNA reductase (hemA)
396	 50.00	0	322879..322956	-	25	18312039	-	PAE0602a	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.