IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2475	 44.58	-1	2103456..2103695	+	79	18314118	-	PAE3504	-	hypothetical protein
2476	 54.73	0	2103787..2103987	+	66	18314119	-	PAE3506	-	hypothetical protein
2477	 53.81	0	2104211..2105875	+	554	18314120	-	PAE3507	-	hypothetical protein
2478	 50.51	0	2105865..2106161	-	98	18314121	-	PAE3509	-	hypothetical protein
2479	 51.66	0	2106303..2106815	+	170	18314122	-	PAE3512	-	hypothetical protein
2480	 55.82	0	2106812..2107567	+	251	18314123	-	PAE3513	-	resolvase, conjectural
2481	 51.83	0	2107642..2108187	-	181	18314124	-	PAE3514	-	xanthine-guanine phosphoribosyltransferase, conjectural
2482	 41.53	-1	2108235..2108954	-	239	18314125	-	PAE3515	-	hypothetical protein
2483	 46.34	-1	2108947..2109192	-	81	18314126	-	PAE3516	-	hypothetical protein
2484	 52.98	0	2109508..2111100	+	530	18314127	-	PAE3518	-	CTP synthetase
2485	 54.92	0	2111090..2111455	-	121	18314128	-	PAE3520	-	NADH dehydrogenase subunit A
2486	 53.10	0	2111502..2112275	+	257	18314129	-	PAE3521	-	hypothetical protein
2487	 54.67	0	2112298..2113047	+	249	18314130	-	PAE3523	-	surE stationary-phase survival protein
2488	 38.84	-2	2113177..2113521	+	114	18314131	-	PAE3524	-	hypothetical protein
2489	 48.51	0	2113530..2114735	+	401	18314132	-	PAE3526	-	hypothetical protein
2490	 39.34	-2	2114757..2115638	+	293	18314133	-	PAE3527	-	hypothetical protein
2491	 58.69	+1	2116048..2116950	-	300	18314134	-	PAE3530	-	paREP12, internal deletion
2492	 69.98	+2	2117092..2118300	-	402	18314135	-	PAE3532	-	hypothetical protein
2493	 66.79	+2	2118384..2119985	-	533	18314136	-	PAE3533	-	hypothetical protein
2494	 62.25	+2	2120034..2120825	-	263	18314137	-	PAE3535	-	hypothetical protein
2495	 63.24	+2	2121046..2121861	-	271	18314138	-	PAE3538	-	hypothetical protein
2496	 67.22	+2	2121970..2122689	-	239	18314139	-	PAE3540	-	hypothetical protein
2497	 56.41	0	2122854..2123009	-	51	18314140	-	PAE3541	-	hypothetical protein
2498	 70.29	+2	2123333..2123773	+	146	18314141	-	PAE3542	-	hypothetical protein
2499	 55.34	0	2124131..2125225	+	364	18314142	-	PAE3544	-	paREP2b
2500	 52.84	0	2125232..2127118	+	628	18314143	-	PAE3545	-	paREP2b
2501	 42.82	-1	2127179..2127547	+	122	18314144	-	PAE3546	-	hypothetical protein
2502	 49.16	0	2127576..2128466	+	296	18314145	-	PAE3547	-	heat shock protein, htpX homolog, conjectural
2503	 40.36	-2	2128450..2128833	+	127	18314146	-	PAE3548	-	hypothetical protein
2504	 48.55	0	2128919..2129365	-	148	18314147	-	PAE3550	-	hypothetical protein
2505	 55.65	0	2129551..2130276	+	241	18314148	-	PAE3553	-	hypothetical protein
2506	 52.79	0	2130268..2131341	-	357	18314149	-	PAE3554	-	mannose-1-phosphate guanyltransferase
2507	 51.58	0	2131349..2132044	-	231	18314150	-	PAE3556	-	hypothetical protein
2508	 51.21	0	2132119..2132325	+	68	18314151	-	PAE3558	-	hypothetical protein
2509	 52.76	0	2132355..2132807	+	150	18314152	-	PAE3559	-	HIT family protein
2510	 51.72	0	2132804..2133847	+	347	18314153	-	PAE3560	-	hypothetical protein
2511	 53.75	0	2133853..2134185	+	110	18314154	-	PAE3561	-	hypothetical protein
2512	 51.74	0	2134271..2134846	+	191	18314155	-	PAE3562	-	DNA-directed RNA polymerase subunit E'
2513	 49.10	0	2134843..2135064	+	73	18314156	-	PAE3563	-	DNA-directed RNA polymerase subunit E'' (rpoE2)
2514	 47.18	0	2135037..2135426	-	129	18314157	-	PAE3564	-	hypothetical protein
2515	 54.05	0	2135471..2138149	+	892	18314158	alaS	PAE3565	-	alanyl-tRNA synthetase
2516	 49.61	0	2138146..2138526	+	126	18314159	nac	PAE3566	-	nascent polypeptide-associated complex protein
2517	 56.17	0	2138574..2139116	+	180	18314160	rpl10e	PAE3567	-	50S ribosomal protein L10e
2518	 49.93	0	2139091..2139831	+	246	18314161	-	PAE3568	-	hypothetical protein
2519	 51.60	0	2139835..2140803	-	322	18314162	-	PAE3569	-	hypothetical protein
2520	 51.11	0	2140957..2141676	+	239	18314163	-	PAE3570	-	sulfate ABC transporter, permease protein, putative
2521	 55.00	0	2141661..2142320	+	219	18314164	-	PAE3571	-	ABC transporter ATP-binding protein, putative
2522	 54.82	0	2142315..2142905	-	196	18314165	-	PAE3573	-	hypothetical protein
2523	 51.70	0	2142978..2143799	+	273	18314166	-	PAE3574	-	hypothetical protein
2524	 48.70	0	2143835..2144374	+	179	18314167	rpl5p	PAE3575	-	50S ribosomal protein L5P
2525	 53.25	0	2144497..2145003	+	168	18314168	-	PAE3577	-	hypothetical protein
2526	 52.21	0	2145000..2146244	+	414	18314169	-	PAE3578	-	sun family protein
2527	 56.14	0	2146234..2147373	-	379	18314170	-	PAE3580	-	hypothetical protein
2528	 56.27	0	2147397..2148743	-	448	18314171	-	PAE3581	-	hypothetical protein
2529	 48.72	0	2148740..2149012	-	90	18314172	-	PAE3582	-	hypothetical protein
2530	 54.23	0	2149129..2150157	+	342	18314173	-	PAE3584	-	citrate synthase part 1, authentic frameshift
2531	 51.92	0	2150161..2150316	+	51	18314174	-	PAE3585	-	citrate synthase part 2, authentic frameshift
2532	 50.58	0	2150355..2151125	+	256	18314175	-	PAE3586	-	electron transfer flavoprotein beta subunit (etfB)
2533	 52.56	0	2151122..2152021	+	299	18314176	-	PAE3587	-	electron transfer flavoprotein alpha subunit (etfA)
2534	 50.24	0	2151986..2152405	-	139	18314177	-	PAE3588	-	hypothetical protein
2535	 52.40	0	2152872..2153642	+	256	18314178	-	PAE3592	-	acetyl-coenzyme A synthetase, degenerate
2536	 53.43	0	2154202..2154813	-	203	18314179	-	PAE3595	-	proteasome, beta subunit
2537	 54.73	0	2154878..2155924	+	348	18314180	-	PAE3596	-	RNA 3'-terminal-phosphate cyclase
2538	 49.56	0	2155912..2156823	-	303	18314181	ubiA	PAE3597	-	prenyltransferase
2539	 49.35	0	2156836..2157453	-	205	18314182	-	PAE3598	-	nitrite reductase (cytochrome C), conjectural
2540	 50.43	0	2157539..2159176	+	545	18314183	-	PAE3600	-	nitrite reductase (cytochrome d1), conjectural
2541	 55.90	0	2159149..2159733	+	194	18314184	-	PAE3601	-	uroporphyrin-III C-methyltransferase
2542	 54.26	0	2159730..2160857	-	375	18314185	-	PAE3602	-	hypothetical protein
2543	 52.03	0	2161205..2163370	+	721	18314186	-	PAE3603	-	nitric oxide reductase, cytochrome b subunit
2544	 47.10	0	2163448..2163912	+	154	18314187	-	PAE3604	-	hypothetical protein
2545	 47.22	0	2163904..2164227	-	107	18314188	-	PAE3605	-	hypothetical protein
2546	 54.23	0	2164455..2165033	+	192	18314189	-	PAE3607	-	hypothetical protein
2547	 55.70	0	2165030..2166370	+	446	18314190	-	PAE3608	-	hypothetical protein
2548	 50.57	0	2166357..2166797	-	146	18314191	-	PAE3609	-	hypothetical protein
2549	 51.55	0	2166844..2167392	-	182	18314192	-	PAE3610	-	nitrate reductase delta subunit (narJ)
2550	 54.36	0	2167486..2171370	+	1294	18314193	-	PAE3611	-	nitrate reductase alpha subunit (narG)
2551	 54.22	0	2171367..2172788	+	473	18314194	-	PAE3612	-	nitrate reductase beta subunit (narH)
2552	 58.87	+1	2172785..2173708	+	307	18314195	-	PAE3613	-	nitrate reductase subunit, conjectural
2553	 49.93	0	2173709..2174407	+	232	18314196	-	PAE3614	-	hypothetical protein
2554	 54.74	0	2174379..2175200	+	273	18314197	-	PAE3615	-	hypothetical protein
2555	 52.04	0	2175236..2175946	+	236	18314198	-	PAE3617	-	hypothetical protein
2556	 56.33	0	2175987..2176547	-	186	18314199	-	PAE3618	-	hypothetical protein
2557	 56.51	0	2176532..2177122	-	196	18314200	-	PAE3619	-	nitrate ABC transport, ATP-binding protein, putative
2558	 55.16	0	2177199..2178128	+	309	18314201	-	PAE3621	-	transport protein, putative
2559	 54.78	0	2178125..2178511	+	128	18314202	-	PAE3623	-	hypothetical protein
2560	 58.04	+1	2178483..2180591	+	702	18314203	-	PAE3624	-	cytochrome C-type biogenesis protein,
2561	 54.92	0	2180581..2181525	+	314	18314204	-	PAE3625	-	hypothetical protein
2562	 53.60	0	2181533..2182573	-	346	18314205	-	PAE3626	-	hypothetical protein
2563	 54.10	0	2182617..2183396	+	259	18314206	-	PAE3627	-	hypothetical protein
2564	 49.59	0	2183638..2183760	+	40	18314207	-	PAE3628	-	hypothetical protein
2565	 55.39	0	2184155..2184775	-	206	18314208	-	PAE3630	-	hypothetical protein
2566	 50.28	0	2184831..2185739	+	302	18314209	-	PAE3631	-	NAD dependent epimerase/dehydratase, putative
2567	 40.44	-2	2185741..2186796	-	351	18314210	-	PAE3632	-	hypothetical protein
2568	 47.57	0	2187622..2187909	+	95	18314211	-	PAE3634	-	hypothetical protein
2569	 54.12	0	2187939..2188520	+	193	18314212	-	PAE3635	-	hypothetical protein
2570	 51.96	0	2188688..2189428	-	246	18314213	-	PAE3636	-	hypothetical protein
2571	 55.11	0	2189484..2190452	+	322	18314214	-	PAE3638	-	hypothetical protein
2572	 58.92	+1	2190449..2190745	+	98	18314215	-	PAE3640	-	hypothetical protein
2573	 57.11	+1	2190775..2191695	+	306	18314216	-	PAE3641	-	hypothetical protein
2574	 53.79	0	2191692..2192483	-	263	18314217	-	PAE3642	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.