IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2440	 51.28	0	2078386..2078814	-	142	18314083	-	PAE3460	-	hypothetical protein
2441	 46.07	-1	2078839..2079882	-	347	18314084	-	PAE3461	-	heat shock protein, htpX homolog, conjectural
2442	 44.12	-1	2080434..2080739	+	101	18314085	-	PAE3464	-	hypothetical protein
2443	 55.26	0	2080744..2082663	+	639	18314086	-	PAE3465	-	molybdenum cofactor biosynthesis protein (moaA)
2444	 55.74	0	2082664..2083908	-	414	18314087	-	PAE3466	-	molybdenum cofactor biosynthesis protein (moaA)
2445	 49.60	0	2083838..2084974	+	378	18314088	-	PAE3467	-	hypothetical protein
2446	 50.00	0	2084945..2085604	-	219	18314089	-	PAE3468	-	hypothetical protein
2447	 45.74	-1	2085604..2085861	-	85	18314090	-	PAE3469	-	AsnC family transcriptional regulator
2448	 44.33	-1	2085892..2086191	-	99	18314091	-	PAE3470	-	hypothetical protein
2449	 48.92	0	2086419..2086925	-	168	18314092	-	PAE3471	-	AsnC family transcriptional regulator
2450	 47.90	0	2087000..2087665	+	221	18314093	-	PAE3472	-	30S ribosomal protein S3Ae
2451	 47.54	0	2087662..2088189	-	175	18314094	-	PAE3473	-	putative RNA-processing protein
2452	 50.31	0	2088234..2089034	+	266	18314095	-	PAE3474	-	hypothetical protein
2453	 53.66	0	2089005..2089550	-	181	18314096	-	PAE3475	-	indolepyruvate oxidoreductase subunit B
2454	 51.41	0	2089535..2090707	-	390	18314097	-	PAE3477	-	indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift
2455	 52.18	0	2090743..2091315	-	190	18314098	-	PAE3478	-	indolepyruvate ferredoxin oxidoreductase alpha subunit part 1, authentic frameshift
2456	 47.78	0	2091399..2091668	+	89	18314099	-	PAE3480	-	transcription associated protein, conjectural
2457	 52.16	0	2091788..2092249	+	153	18314100	-	PAE3481	-	hypothetical protein
2458	 43.33	-1	2092236..2092475	-	79	18314101	-	PAE3482	-	hypothetical protein
2459	 47.13	0	2092456..2093499	-	347	18314102	-	PAE3484	-	hypothetical protein
2460	 49.56	0	2093528..2093983	-	151	18314103	rps15p	PAE3485	-	30S ribosomal protein S15P
2461	 51.22	0	2093922..2094782	+	286	18314104	-	PAE3486	-	hypothetical protein
2462	 50.17	0	2094779..2095657	+	292	18314105	-	PAE3487	-	putative deoxyhypusine synthase
2463	 51.30	0	2095659..2096621	+	320	18314106	-	PAE3488	-	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
2464	 46.15	-1	2096639..2096833	+	64	18314107	-	PAE3489	-	hypothetical protein
2465	 49.38	0	2096951..2097436	+	161	18314108	-	PAE3492	-	hypothetical protein
2466	 52.56	0	2097433..2098290	+	285	18314109	-	PAE3494	-	hypothetical protein
2467	 55.31	0	2098259..2098945	-	228	18314110	-	PAE3495	-	hypothetical protein
2468	 44.20	-1	2099116..2099520	-	134	18314111	-	PAE3497	-	hypothetical protein
2469	 53.01	0	2099567..2100298	+	243	18314112	-	PAE3498	-	hypothetical protein
2470	 54.46	0	2100274..2100609	-	111	18314113	-	PAE3499	-	hypothetical protein
2471	 58.40	+1	2100670..2101419	-	249	18314114	-	PAE3500	-	NAD-dependent deacetylase
2472	 45.61	-1	2101487..2101543	-	18	18314115	-	PAE3501a	-	hypothetical protein
2473	 44.52	-1	2102079..2102543	+	154	18314116	-	PAE3502	-	hypothetical protein
2474	 51.02	0	2102893..2103480	+	195	18314117	-	PAE3503	-	hypothetical protein
2475	 44.58	-1	2103456..2103695	+	79	18314118	-	PAE3504	-	hypothetical protein
2476	 54.73	0	2103787..2103987	+	66	18314119	-	PAE3506	-	hypothetical protein
2477	 53.81	0	2104211..2105875	+	554	18314120	-	PAE3507	-	hypothetical protein
2478	 50.51	0	2105865..2106161	-	98	18314121	-	PAE3509	-	hypothetical protein
2479	 51.66	0	2106303..2106815	+	170	18314122	-	PAE3512	-	hypothetical protein
2480	 55.82	0	2106812..2107567	+	251	18314123	-	PAE3513	-	resolvase, conjectural
2481	 51.83	0	2107642..2108187	-	181	18314124	-	PAE3514	-	xanthine-guanine phosphoribosyltransferase, conjectural
2482	 41.53	-1	2108235..2108954	-	239	18314125	-	PAE3515	-	hypothetical protein
2483	 46.34	-1	2108947..2109192	-	81	18314126	-	PAE3516	-	hypothetical protein
2484	 52.98	0	2109508..2111100	+	530	18314127	-	PAE3518	-	CTP synthetase
2485	 54.92	0	2111090..2111455	-	121	18314128	-	PAE3520	-	NADH dehydrogenase subunit A
2486	 53.10	0	2111502..2112275	+	257	18314129	-	PAE3521	-	hypothetical protein
2487	 54.67	0	2112298..2113047	+	249	18314130	-	PAE3523	-	surE stationary-phase survival protein
2488	 38.84	-2	2113177..2113521	+	114	18314131	-	PAE3524	-	hypothetical protein
2489	 48.51	0	2113530..2114735	+	401	18314132	-	PAE3526	-	hypothetical protein
2490	 39.34	-2	2114757..2115638	+	293	18314133	-	PAE3527	-	hypothetical protein
2491	 58.69	+1	2116048..2116950	-	300	18314134	-	PAE3530	-	paREP12, internal deletion
2492	 69.98	+2	2117092..2118300	-	402	18314135	-	PAE3532	-	hypothetical protein
2493	 66.79	+2	2118384..2119985	-	533	18314136	-	PAE3533	-	hypothetical protein
2494	 62.25	+2	2120034..2120825	-	263	18314137	-	PAE3535	-	hypothetical protein
2495	 63.24	+2	2121046..2121861	-	271	18314138	-	PAE3538	-	hypothetical protein
2496	 67.22	+2	2121970..2122689	-	239	18314139	-	PAE3540	-	hypothetical protein
2497	 56.41	0	2122854..2123009	-	51	18314140	-	PAE3541	-	hypothetical protein
2498	 70.29	+2	2123333..2123773	+	146	18314141	-	PAE3542	-	hypothetical protein
2499	 55.34	0	2124131..2125225	+	364	18314142	-	PAE3544	-	paREP2b
2500	 52.84	0	2125232..2127118	+	628	18314143	-	PAE3545	-	paREP2b
2501	 42.82	-1	2127179..2127547	+	122	18314144	-	PAE3546	-	hypothetical protein
2502	 49.16	0	2127576..2128466	+	296	18314145	-	PAE3547	-	heat shock protein, htpX homolog, conjectural
2503	 40.36	-2	2128450..2128833	+	127	18314146	-	PAE3548	-	hypothetical protein
2504	 48.55	0	2128919..2129365	-	148	18314147	-	PAE3550	-	hypothetical protein
2505	 55.65	0	2129551..2130276	+	241	18314148	-	PAE3553	-	hypothetical protein
2506	 52.79	0	2130268..2131341	-	357	18314149	-	PAE3554	-	mannose-1-phosphate guanyltransferase
2507	 51.58	0	2131349..2132044	-	231	18314150	-	PAE3556	-	hypothetical protein
2508	 51.21	0	2132119..2132325	+	68	18314151	-	PAE3558	-	hypothetical protein
2509	 52.76	0	2132355..2132807	+	150	18314152	-	PAE3559	-	HIT family protein
2510	 51.72	0	2132804..2133847	+	347	18314153	-	PAE3560	-	hypothetical protein
2511	 53.75	0	2133853..2134185	+	110	18314154	-	PAE3561	-	hypothetical protein
2512	 51.74	0	2134271..2134846	+	191	18314155	-	PAE3562	-	DNA-directed RNA polymerase subunit E'
2513	 49.10	0	2134843..2135064	+	73	18314156	-	PAE3563	-	DNA-directed RNA polymerase subunit E'' (rpoE2)
2514	 47.18	0	2135037..2135426	-	129	18314157	-	PAE3564	-	hypothetical protein
2515	 54.05	0	2135471..2138149	+	892	18314158	alaS	PAE3565	-	alanyl-tRNA synthetase
2516	 49.61	0	2138146..2138526	+	126	18314159	nac	PAE3566	-	nascent polypeptide-associated complex protein
2517	 56.17	0	2138574..2139116	+	180	18314160	rpl10e	PAE3567	-	50S ribosomal protein L10e
2518	 49.93	0	2139091..2139831	+	246	18314161	-	PAE3568	-	hypothetical protein
2519	 51.60	0	2139835..2140803	-	322	18314162	-	PAE3569	-	hypothetical protein
2520	 51.11	0	2140957..2141676	+	239	18314163	-	PAE3570	-	sulfate ABC transporter, permease protein, putative
2521	 55.00	0	2141661..2142320	+	219	18314164	-	PAE3571	-	ABC transporter ATP-binding protein, putative
2522	 54.82	0	2142315..2142905	-	196	18314165	-	PAE3573	-	hypothetical protein
2523	 51.70	0	2142978..2143799	+	273	18314166	-	PAE3574	-	hypothetical protein
2524	 48.70	0	2143835..2144374	+	179	18314167	rpl5p	PAE3575	-	50S ribosomal protein L5P
2525	 53.25	0	2144497..2145003	+	168	18314168	-	PAE3577	-	hypothetical protein
2526	 52.21	0	2145000..2146244	+	414	18314169	-	PAE3578	-	sun family protein
2527	 56.14	0	2146234..2147373	-	379	18314170	-	PAE3580	-	hypothetical protein
2528	 56.27	0	2147397..2148743	-	448	18314171	-	PAE3581	-	hypothetical protein
2529	 48.72	0	2148740..2149012	-	90	18314172	-	PAE3582	-	hypothetical protein
2530	 54.23	0	2149129..2150157	+	342	18314173	-	PAE3584	-	citrate synthase part 1, authentic frameshift
2531	 51.92	0	2150161..2150316	+	51	18314174	-	PAE3585	-	citrate synthase part 2, authentic frameshift
2532	 50.58	0	2150355..2151125	+	256	18314175	-	PAE3586	-	electron transfer flavoprotein beta subunit (etfB)
2533	 52.56	0	2151122..2152021	+	299	18314176	-	PAE3587	-	electron transfer flavoprotein alpha subunit (etfA)
2534	 50.24	0	2151986..2152405	-	139	18314177	-	PAE3588	-	hypothetical protein
2535	 52.40	0	2152872..2153642	+	256	18314178	-	PAE3592	-	acetyl-coenzyme A synthetase, degenerate
2536	 53.43	0	2154202..2154813	-	203	18314179	-	PAE3595	-	proteasome, beta subunit
2537	 54.73	0	2154878..2155924	+	348	18314180	-	PAE3596	-	RNA 3'-terminal-phosphate cyclase
2538	 49.56	0	2155912..2156823	-	303	18314181	ubiA	PAE3597	-	prenyltransferase
2539	 49.35	0	2156836..2157453	-	205	18314182	-	PAE3598	-	nitrite reductase (cytochrome C), conjectural
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.