IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.51 STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2345	 47.67	0	1989828..1990622	+	264	18313988	-	PAE3323	-	hypothetical protein
2346	 43.26	-1	1990603..1991025	-	140	18313989	-	PAE3324	-	hypothetical protein
2347	 45.71	-1	1991088..1992347	-	419	18313990	-	PAE3325	-	tRNA CCA-pyrophosphorylase
2348	 43.26	-1	1992344..1992907	-	187	18313991	-	PAE3326	-	hypothetical protein
2349	 44.52	-1	1992904..1993341	-	145	18313992	-	PAE3327	-	DNA binding transcriptional repressor, conjectural
2350	 46.71	0	1993374..1994270	-	298	18313993	-	PAE3329	-	transcription initiation factor IIB (TFIIB)
2351	 42.17	-1	1994267..1994515	-	82	161485619	-	PAE3330	-	H/ACA RNA-protein complex component Gar1
2352	 47.98	0	1994625..1995020	+	131	18313995	-	PAE3331	-	30S ribosomal protein S8e
2353	 47.22	0	1995017..1995304	+	95	18313996	-	PAE3332	-	signal recognition particle
2354	 46.13	-1	1995304..1996053	+	249	18313997	-	PAE3333	-	GTPase
2355	 45.21	-1	1996038..1996340	-	100	18313998	-	PAE3334	-	50S ribosomal protein L21e
2356	 41.96	-1	1996428..1996763	+	111	18313999	-	PAE3335	-	hypothetical protein
2357	 43.08	-1	1996760..1997344	+	194	18314000	-	PAE3336	-	hypothetical protein
2358	 48.12	0	1997346..1997744	-	132	18314001	-	PAE3337	-	translation initiation factor IF-5A
2359	 50.83	0	1997775..1998614	-	279	18314002	-	PAE3338	-	5'-methylthioadenosine phosphorylase II
2360	 49.90	0	1998646..1999134	+	162	18314003	-	PAE3339	-	hypothetical protein
2361	 43.80	-1	1999160..1999522	+	120	18314004	-	PAE3340	-	translation initiation factor SUI1-like protein
2362	 47.39	0	1999780..2000277	-	165	18314005	-	PAE3342	-	hypothetical protein
2363	 49.13	0	2000331..2002223	-	630	18314006	argS	PAE3343	-	arginyl-tRNA synthetase
2364	 49.57	0	2002290..2002523	+	77	18314007	rps28e	PAE3344	-	30S ribosomal protein S28e
2365	 46.89	0	2002520..2002696	+	58	18314008	-	PAE3345	-	ribosomal protein L24
2366	 51.32	0	2002697..2003152	-	151	18314009	rpl7ae	PAE3347	-	50S ribosomal protein L7Ae
2367	 44.41	-1	2003184..2004275	-	363	18314010	-	PAE3348	-	branched-chain amino acid transport permease protein
2368	 43.12	-1	2004272..2005231	-	319	18314011	-	PAE3350	-	branched-chain amino acid transport permease protein
2369	 49.85	0	2005342..2006691	+	449	18314012	-	PAE3353	-	branched-chain amino acid binding protein
2370	 45.40	-1	2006724..2007494	+	256	18314013	-	PAE3354	-	branched-chain amino acid transport ATP-binding protein
2371	 47.58	0	2007897..2010269	+	790	18314014	-	PAE3356	-	hypothetical protein
2372	 49.33	0	2010262..2011686	+	474	18314015	-	PAE3357	-	antibiotic resistance (efflux) protein, conjectural
2373	 52.93	0	2011696..2012787	+	363	18314016	-	PAE3359	-	hypothetical protein
2374	 48.10	0	2012769..2013188	+	139	18314017	-	PAE3361	-	hypothetical protein
2375	 45.98	-1	2013263..2014108	+	281	18314018	-	PAE3364	-	hypothetical protein
2376	 47.93	0	2014139..2015440	+	433	18314019	-	PAE3365	-	signal recognition particle
2377	 48.35	0	2015524..2015916	+	130	18314020	-	PAE3367	-	hypothetical protein
2378	 47.90	0	2015936..2017171	+	411	18314021	-	PAE3368	-	hypothetical protein
2379	 50.99	0	2017200..2018717	+	505	18314022	guaA	PAE3369	-	bifunctional GMP synthase/glutamine amidotransferase protein
2380	 55.53	0	2018908..2020299	+	463	18314023	-	PAE3371	-	gamma-glutamyltransferase
2381	 56.72	+1	2020895..2021095	-	66	18314024	-	PAE3373	-	paREP2b
2382	 48.07	0	2021219..2021503	+	94	18314025	-	PAE3375	-	hypothetical protein
2383	 49.84	0	2021500..2022444	-	314	18314026	-	PAE3376	-	beta-lactamase-like protein
2384	 55.00	0	2022708..2023427	+	239	18314027	-	PAE3378	-	sugar fermentation stimulation protein, conjectural
2385	 53.87	0	2023407..2024258	-	283	18314028	-	PAE3380	-	hypothetical protein
2386	 52.48	0	2024297..2024881	+	194	18314029	-	PAE3381	-	beta-lactamase-like protein
2387	 50.87	0	2025224..2027971	+	915	18314030	-	PAE3383	-	pyruvate phosphate dikinase
2388	 48.15	0	2028163..2028432	+	89	18314031	-	PAE3386	-	hypothetical protein
2389	 43.66	-1	2028820..2029158	-	112	18314032	-	PAE3387	-	hypothetical protein
2390	 53.62	0	2029215..2029490	-	91	18314033	-	PAE3390	-	hypothetical protein
2391	 37.68	-2	2029529..2029873	-	114	18314034	-	PAE3391	-	hypothetical protein
2392	 41.70	-1	2029927..2030595	-	222	18314035	-	PAE3393	-	hypothetical protein
2393	 47.70	0	2030663..2031031	-	122	18314036	-	PAE3394a	-	hypothetical protein
2394	 45.24	-1	2031071..2031532	-	153	18314037	-	PAE3397	-	hypothetical protein
2395	 47.56	0	2031561..2033282	-	573	18314038	-	PAE3399	-	hypothetical protein
2396	 51.67	0	2033393..2034172	+	259	18314039	-	PAE3402	-	hypothetical protein
2397	 47.62	0	2034162..2034644	+	160	18314040	-	PAE3403	-	hypothetical protein
2398	 52.65	0	2034655..2035596	-	313	18314041	-	PAE3404	-	acyl coenzyme A thioester hydrolase
2399	 51.69	0	2035643..2036410	+	255	18314042	-	PAE3406	-	hypothetical protein
2400	 57.69	+1	2036523..2037302	-	259	18314043	-	PAE3407	-	hypothetical protein
2401	 54.88	0	2037295..2038134	-	279	18314044	-	PAE3409	-	2-dehydropantoate 2-reductase (ketopantoate reductase)
2402	 54.25	0	2038167..2038955	+	262	18314045	panB	PAE3410	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2403	 51.45	0	2039154..2040014	-	286	18314046	-	PAE3411	-	sugar transport permease protein
2404	 55.35	0	2040005..2040967	-	320	18314047	-	PAE3412	-	ribose ABC transporter, permease protein
2405	 49.18	0	2040964..2042358	-	464	18314048	-	PAE3413	-	ribose ABC transport system ATP-binding protein
2406	 52.93	0	2042360..2043655	-	431	18314049	-	PAE3414	-	hypothetical protein
2407	 51.99	0	2043807..2045189	-	460	18314050	-	PAE3416	-	phosphoenolpyruvate carboxylase
2408	 53.97	0	2045228..2046172	-	314	18314051	-	PAE3418	-	hypothetical protein
2409	 56.25	0	2046236..2046379	-	47	18314052	-	PAE3419	-	paREP2b
2410	 53.06	0	2046661..2048115	-	484	18314053	-	PAE3421	-	thiamine biosynthesis protein ThiI
2411	 51.96	0	2048133..2049587	-	484	18314054	-	PAE3422	-	hypothetical protein
2412	 48.41	0	2050011..2050607	+	198	18314055	-	PAE3424	-	hypothetical protein
2413	 54.86	0	2051210..2053039	-	609	18314056	-	PAE3427	-	aldehyde ferredoxin oxidoreductase (aor)
2414	 52.62	0	2053132..2054505	+	457	18314057	-	PAE3428	-	hypothetical protein
2415	 53.17	0	2054507..2055958	+	483	18314058	-	PAE3429	-	glycogen synthase, putative
2416	 48.28	0	2055988..2057211	+	407	18314059	-	PAE3430	-	glucose-1-phosphate adenylyltransferase
2417	 50.80	0	2057188..2058000	-	270	18314060	-	PAE3431	-	hypothetical protein
2418	 47.92	0	2058001..2058144	-	47	18314061	-	PAE3432	-	hypothetical protein
2419	 58.59	+1	2058230..2058328	-	32	18314062	-	PAE3434	-	paREP2b
2420	 45.00	-1	2058399..2059778	-	459	18314063	-	PAE3435	-	preprotein translocase subunit SecY
2421	 49.26	0	2059775..2060245	-	156	18314064	rpl15p	PAE3436	-	50S ribosomal protein L15P
2422	 50.06	0	2060281..2061171	-	296	18314065	-	PAE3437	-	glucokinase (ROK family protein), conjectural
2423	 51.09	0	2061272..2062555	+	427	18314066	-	PAE3438	-	glutamate dehydrogenase
2424	 35.90	-2	2062538..2062654	-	38	18314067	-	PAE3440	-	hypothetical protein
2425	 41.78	-1	2062651..2063100	-	149	18314068	-	PAE3441	-	hypothetical protein
2426	 54.96	0	2063246..2064535	-	429	18314069	-	PAE3442	-	glutamine synthetase
2427	 48.68	0	2064862..2066601	+	579	18314070	-	PAE3443	-	glutamate synthase subunit, conjectural
2428	 49.52	0	2066598..2068667	+	689	18314071	-	PAE3444	-	glutamate synthase subunit, conjectural
2429	 48.63	0	2068641..2069006	-	121	18314072	-	PAE3445	-	hypothetical protein
2430	 50.30	0	2069006..2070160	-	384	18314073	-	PAE3447	-	aminotransferase, class-V
2431	 46.20	-1	2070160..2070462	-	100	18314074	-	PAE3450	-	hypothetical protein
2432	 55.14	0	2070642..2070962	-	106	18314075	-	PAE3449a	-	hypothetical protein
2433	 40.00	-2	2071010..2071219	-	69	18314076	-	PAE3452	-	hypothetical protein
2434	 53.46	0	2071305..2072099	-	264	18314077	-	PAE3453	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2435	 48.07	0	2072150..2075149	+	999	18314078	-	PAE3454	-	pullulanase
2436	 45.80	-1	2075181..2076455	+	424	18314079	-	PAE3455	-	maltose ABC transporter, maltose binding protein
2437	 46.97	0	2076456..2077379	+	307	18314080	-	PAE3456	-	maltose ABC transporter, permease protein
2438	 46.59	0	2077369..2078175	+	268	18314081	-	PAE3457	-	maltose ABC transporter, permease protein
2439	 53.45	0	2078172..2078345	-	57	18314082	-	PAE3458	-	hypothetical protein
2440	 51.28	0	2078386..2078814	-	142	18314083	-	PAE3460	-	hypothetical protein
2441	 46.07	-1	2078839..2079882	-	347	18314084	-	PAE3461	-	heat shock protein, htpX homolog, conjectural
2442	 44.12	-1	2080434..2080739	+	101	18314085	-	PAE3464	-	hypothetical protein
2443	 55.26	0	2080744..2082663	+	639	18314086	-	PAE3465	-	molybdenum cofactor biosynthesis protein (moaA)
2444	 55.74	0	2082664..2083908	-	414	18314087	-	PAE3466	-	molybdenum cofactor biosynthesis protein (moaA)
51.51	MEAN

5.01	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.