IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
187	 42.52	-1	155066..156349	-	427	18311830	-	PAE0279	-	hypothetical protein
188	 53.78	0	156806..157387	-	193	18311831	-	PAE0280	-	hypothetical protein
189	 52.54	0	157359..159680	-	773	18311832	-	PAE0282	-	hypothetical protein
190	 56.10	0	160080..160505	-	141	18311833	-	PAE0284	-	hypothetical protein
191	 51.40	0	160575..160967	-	130	18311834	-	PAE0285	-	hypothetical protein
192	 51.52	0	160952..161050	-	32	18311835	-	PAE0286	-	paREP2b
193	 39.39	-2	161995..162159	-	54	18311836	-	PAE0288	-	hypothetical protein
194	 43.98	-1	162146..163159	-	337	18311837	-	PAE0289	-	metallo cofactor biosynthesis protein, conjectural
195	 41.09	-2	163159..163416	-	85	18311838	-	PAE0290	-	hypothetical protein
196	 41.05	-2	163413..163982	-	189	18311839	-	PAE0292	-	hypothetical protein
197	 46.46	-1	164013..164492	+	159	18311840	-	PAE0293	-	hypothetical protein
198	 58.18	+1	164489..165313	+	274	18311841	-	PAE0294	-	hypothetical protein
199	 48.39	0	165416..165508	-	30	18311842	-	PAE0294a	-	hypothetical protein
200	 52.48	0	165922..166062	+	46	18311843	-	PAE0294b	-	hypothetical protein
201	 51.39	0	166202..166417	-	71	18311844	-	PAE0296	-	helix-turn-helix protein, conjectural
202	 57.41	+1	166449..167366	-	305	18311845	-	PAE0297	-	hypothetical protein
203	 52.87	0	167482..167952	-	156	18311846	-	PAE0298	-	paREP2a
204	 54.60	0	168033..169259	+	408	18311847	-	PAE0299	-	paREP2b
205	 55.14	0	169487..169972	+	161	18311848	-	PAE0301	-	hypothetical protein
206	 52.62	0	169961..170437	-	158	18311849	-	PAE0302	-	paREP1
207	 53.20	0	170456..171220	-	254	18311850	-	PAE0303	-	hypothetical protein
208	 41.83	-1	171205..171357	-	50	18311851	-	PAE0304	-	hypothetical protein
209	 49.67	0	171399..171551	-	50	18311852	-	PAE0305	-	hypothetical protein
210	 52.78	0	171767..171946	-	59	18311853	-	PAE0307	-	hypothetical protein
211	 50.00	0	171931..172116	-	61	18311854	-	PAE0308	-	hypothetical protein
212	 57.67	+1	172151..173206	+	351	18311855	-	PAE0309	-	chlorohydrolase, conjectural
213	 45.11	-1	173486..173884	-	132	18311856	-	PAE0311	-	hypothetical protein
214	 47.79	0	173878..174126	-	82	18311857	-	PAE0312	-	hypothetical protein
215	 49.18	0	174245..174427	-	60	18311858	-	PAE0313	-	hypothetical protein
216	 51.78	0	174484..175128	-	214	18311859	-	PAE0314	-	hypothetical protein
217	 54.43	0	175597..176487	+	296	18311860	-	PAE0315	-	ABC-2 type transport system ATP-binding protein
218	 55.23	0	176474..177199	+	241	18311861	-	PAE0316	-	ABC-2 type transport system, membrane protein
219	 50.61	0	177307..177636	-	109	18311862	-	PAE0317	-	GTP cyclohydrolase I, conjectural
220	 56.03	0	177677..179293	+	538	18311863	-	PAE0318	-	hypothetical protein
221	 53.72	0	179299..180441	+	380	18311864	-	PAE0320	-	hypothetical protein
222	 55.21	0	180435..181586	+	383	18311865	-	PAE0322	-	dihydroorotase (pyrC)
223	 48.59	0	181627..183009	-	460	18311866	-	PAE0323	-	iron (II) transporter (feoB-2) part 1, conjectural, authentic frameshift
224	 48.75	0	183054..183332	-	92	18311867	-	PAE0324	-	iron (II) transporter (feoB-2) part 2, conjectural, authentic frameshift
225	 53.75	0	183602..184522	+	306	18311868	-	PAE0328	-	thiamine transport ATP-binding protein
226	 50.66	0	184519..185967	-	482	18311869	-	PAE0329	-	hypothetical protein
227	 47.87	0	186079..186945	-	288	18311870	-	PAE0331	-	thiamine-binding periplasmic protein
228	 52.50	0	187058..189280	-	740	18311871	-	PAE0332	-	elongation factor EF-2
229	 54.29	0	189328..190620	-	430	18311872	-	PAE0333	-	thiamine biosynthesis protein ThiC
230	 57.89	+1	190768..191052	+	94	18311873	-	PAE0335	-	hypothetical protein
231	 53.06	0	191049..191489	+	146	18311874	-	PAE0337	-	hypothetical protein
232	 44.85	-1	191524..191688	+	54	18311875	-	PAE0338	-	hypothetical protein
233	 53.44	0	191798..192757	-	319	18311876	-	PAE0339	-	cobalamin biosynthesis protein CbiG
234	 51.09	0	192744..193385	-	213	18311877	-	PAE0340	-	cobalt-precorrin-6Y C(5)-methyltransferase
235	 52.63	0	193478..193705	+	75	18311878	-	PAE0341	-	hypothetical protein
236	 55.37	0	193746..194294	+	182	18311879	-	PAE0342	-	hypothetical protein
237	 53.77	0	194282..195235	+	317	18311880	-	PAE0343	-	precorrin-8X methylmutase
238	 52.03	0	195225..195962	+	245	18311881	-	PAE0344	-	precorrin-3B C17-methyltransferase
239	 55.23	0	195959..196981	+	340	18311882	cbiD	PAE0346	-	cobalt-precorrin-6A synthase
240	 52.79	0	196978..197568	+	196	18311883	cbiT	PAE0347	-	cobalt-precorrin-6Y C(15)-methyltransferase
241	 51.36	0	197561..198187	+	208	18311884	-	PAE0348	-	cobalt-precorrin-2 C(20)-methyltransferase
242	 56.65	+1	198172..198960	+	262	18311885	-	PAE0349	-	cobalamin biosynthesis precorrin-3 methylase (cbiF)
243	 44.10	-1	199877..200164	-	95	18311886	-	PAE0351	-	hypothetical protein
244	 48.20	0	200276..200692	+	138	18311887	-	PAE0353	-	hypothetical protein
245	 45.47	-1	201001..201618	-	205	18311888	-	PAE0355	-	hypothetical protein
246	 50.65	0	202050..203054	-	334	18311889	-	PAE0356	-	hypothetical protein
247	 52.55	0	203378..204043	-	221	18311890	-	PAE0360	-	ABC transporter, ATP-binding protein
248	 53.33	0	204046..205620	-	524	18311891	-	PAE0362	-	paREP2b
249	 53.06	0	205731..205877	+	48	18311892	-	PAE0364	-	paREP2a
250	 56.10	0	205916..206833	-	305	18311893	-	PAE0366	-	iron (III) dicitrate transport system, permease protein, putative
251	 52.61	0	206830..208152	-	440	18311894	-	PAE0367	-	hypothetical protein
252	 59.64	+1	208175..209341	-	388	18311895	-	PAE0368	-	protease
253	 54.63	0	209386..210216	+	276	18311896	-	PAE0369	-	paREP1
254	 53.12	0	210547..211011	-	154	18311897	-	PAE0370	-	cob(I)alamin adenosyltransferase
255	 58.03	+1	211040..212035	-	331	18311898	-	PAE0371	-	hypothetical protein
256	 56.44	0	212025..213041	-	338	18311899	-	PAE0372	-	hypothetical protein
257	 52.81	0	213289..213894	+	201	18311900	-	PAE0374	-	hypothetical protein
258	 56.00	0	213891..214715	+	274	18311901	-	PAE0376	-	asparagine synthetase (asnB)
259	 56.86	+1	214660..215607	+	315	18311902	-	PAE0377	-	cobC aminotransferase, conjectural
260	 57.19	+1	215594..216268	+	224	18311903	-	PAE0379	-	cobalamin (5'-phosphate) synthase (cobS)
261	 55.97	0	216243..217214	+	323	18311904	-	PAE0381	-	cobalamin biosynthesis protein B (cbiB)
262	 45.61	-1	217626..217796	+	56	18311905	-	PAE0384	-	paREP4
263	 52.78	0	217818..218105	+	95	18311906	-	PAE0385	-	metal ion binding transcriptional regulator, conjectural
264	 55.27	0	218143..218379	-	78	18311907	-	PAE0388	-	hypothetical protein
265	 58.21	+1	218432..219046	-	204	18311908	-	PAE0389	-	sulfite oxidase, conjectural
266	 55.56	0	219219..219353	-	44	18311909	-	PAE0390	-	paREP1, degenerate
267	 46.28	-1	219654..219962	+	102	18311910	-	PAE0391a	-	hypothetical protein
268	 51.67	0	219938..220237	+	99	18311911	-	PAE0393	-	paREP6
269	 52.43	0	220346..220633	+	95	18311912	-	PAE0394	-	hypothetical protein
270	 53.28	0	220627..221037	+	136	18311913	-	PAE0396	-	hypothetical protein
271	 46.67	0	221058..221297	+	79	18311914	-	PAE0397	-	hypothetical protein
272	 56.47	0	221845..222207	+	120	18311915	-	PAE0398	-	hypothetical protein
273	 62.28	+2	222410..222637	+	75	18311916	-	PAE0399	-	hypothetical protein
274	 60.68	+1	222640..222990	+	116	18311917	-	PAE0401	-	hypothetical protein
275	 59.62	+1	222995..224002	+	335	18311918	-	PAE0402	-	hypothetical protein
276	 59.18	+1	224428..225429	+	333	18311919	-	PAE0404	-	hypothetical protein
277	 53.21	0	225611..225922	+	103	18311920	-	PAE0407	-	paREP8
278	 48.57	0	225966..226175	-	69	18311921	-	PAE0409	-	hypothetical protein
279	 43.25	-1	226397..226648	+	83	18311922	-	PAE0410	-	hypothetical protein
280	 53.68	0	226651..226935	+	94	18311923	-	PAE0411	-	hypothetical protein
281	 57.78	+1	226953..227087	+	44	18311924	-	PAE0412	-	hypothetical protein
282	 60.17	+1	227117..227578	+	153	18311925	-	PAE0413	-	hypothetical protein
283	 53.33	0	227611..227850	-	79	18311926	-	PAE0415	-	hypothetical protein
284	 55.38	0	227875..228441	+	188	18311927	-	PAE0417	-	paREP1
285	 58.59	+1	228549..228746	+	65	18311928	-	PAE0418	-	hypothetical protein
286	 63.84	+2	228788..229885	+	365	18311929	-	PAE0419	-	glycosyl transferase, putative
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.