IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2278	 47.03	0	1933477..1934031	+	184	18313921	-	PAE3225	-	cytidylate kinase
2279	 54.12	0	1934085..1935128	+	347	18313922	-	PAE3227	-	putative glutamate synthase subunit beta
2280	 50.42	0	1935129..1935836	-	235	18313923	-	PAE3228	-	fibrillarin
2281	 51.34	0	1936064..1937329	-	421	18313924	-	PAE3232	-	nop family pre-rRNA processing protein
2282	 55.68	0	1937914..1938468	+	184	18313925	-	PAE3235	-	paREP1
2283	 49.74	0	1938496..1939842	-	448	18313926	-	PAE3237	-	beta-lactamase-like protein
2284	 53.85	0	1939845..1940780	-	311	18313927	-	PAE3238	-	DNA repair protein radA
2285	 48.63	0	1940801..1940983	-	60	18313928	-	PAE3239	-	hypothetical protein
2286	 48.73	0	1941134..1942036	+	300	18313929	-	PAE3241	-	hypothetical protein
2287	 40.39	-2	1942033..1942287	-	84	18313930	-	PAE3242	-	hypothetical protein
2288	 51.11	0	1942268..1942762	-	164	18313931	-	PAE3243	-	hypothetical protein
2289	 52.47	0	1942935..1943744	+	269	18313932	-	PAE3244	-	chromosome partitioning ATPase, parA family protein, conjectural
2290	 50.00	0	1943887..1944114	-	75	18313933	-	PAE3245	-	hypothetical protein
2291	 52.46	0	1944155..1944682	-	175	18313934	-	PAE3246	-	hypothetical protein
2292	 52.55	0	1944663..1945484	-	273	18313935	-	PAE3247	-	morphine 6-dehydrogenase, conjectural
2293	 53.22	0	1945514..1946212	-	232	18313936	-	PAE3249	-	hypothetical protein
2294	 52.45	0	1946209..1947594	-	461	18313937	-	PAE3250	-	hypothetical protein
2295	 51.17	0	1947673..1948401	+	242	18313938	-	PAE3251	-	hypothetical protein
2296	 47.62	0	1948398..1948964	-	188	18313939	-	PAE3252	-	hypothetical protein
2297	 45.49	-1	1949066..1949542	+	158	18313940	-	PAE3253	-	hypothetical protein
2298	 51.87	0	1949537..1951462	-	641	18313941	-	PAE3254	-	hypothetical protein
2299	 50.62	0	1951510..1951671	+	53	18313942	rpl40e	PAE3255	-	50S ribosomal protein L40e
2300	 49.88	0	1951861..1952688	-	275	18313943	-	PAE3257	-	DNA-(apurinic or apyrimidinic site) lyase (endonuclease IV)
2301	 51.11	0	1952863..1954707	+	614	18313944	-	PAE3259	-	hypothetical protein
2302	 49.12	0	1954764..1955276	-	170	18313945	-	PAE3260	-	hypothetical protein
2303	 47.06	0	1955300..1957456	-	718	18313946	-	PAE3261	-	hypothetical protein
2304	 54.22	0	1957504..1958001	+	165	18313947	-	PAE3262	-	hypothetical protein
2305	 53.24	0	1957973..1958866	-	297	18313948	-	PAE3263	-	dihydroorotate dehydrogenase (pyrD)
2306	 56.79	+1	1958854..1959420	-	188	18313949	pyrE	PAE3264	-	orotate phosphoribosyltransferase
2307	 50.66	0	1959432..1959887	-	151	18313950	-	PAE3265	-	aspartate carbamoyltransferase regulatory subunit
2308	 49.89	0	1960386..1961708	-	440	18313951	-	PAE3268	-	branched-chain amino acid binding protein, putative
2309	 48.70	0	1961778..1962506	+	242	18313952	-	PAE3269	-	branched-chain amino acid ABC transporter, ATP-binding protein, putative
2310	 47.98	0	1962668..1962988	-	106	18313953	rpoK	PAE3271	-	DNA-directed RNA polymerase subunit K
2311	 50.84	0	1963066..1964727	-	553	18313954	-	PAE3273	-	thermosome (chaperonin) beta subunit
2312	 53.25	0	1964773..1965681	-	302	18313955	-	PAE3274	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
2313	 49.87	0	1965678..1966832	-	384	18313956	-	PAE3275	-	2-ketoacid ferredoxin oxidoreductase alpha subunit
2314	 51.98	0	1966829..1967080	-	83	18313957	-	PAE3276	-	2-ketoacid ferredoxin oxidoreductase delta subunit
2315	 49.82	0	1967227..1967778	+	183	18313958	-	PAE3279	-	2-ketoacid ferredoxin oxidoreductase gamma subunit
2316	 50.07	0	1967775..1969124	-	449	18313959	-	PAE3281	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, conjectural
2317	 48.73	0	1969170..1969877	+	235	18313960	-	PAE3282	-	hypothetical protein
2318	 48.46	0	1969958..1970380	+	140	18313961	-	PAE3284	-	hypothetical protein
2319	 47.33	0	1970404..1971039	+	211	18313962	-	PAE3285	-	hypothetical protein
2320	 41.67	-1	1971029..1971184	-	51	18313963	-	PAE3286	-	hypothetical protein
2321	 44.44	-1	1971332..1972330	+	332	18313964	-	PAE3287	-	cell division protein pelota (pelA), conjectural
2322	 47.13	0	1972365..1972538	-	57	18313965	-	PAE3289	-	paREP4
2323	 45.81	-1	1972784..1973272	+	162	18313966	-	PAE3290	-	hypothetical protein
2324	 47.32	0	1973255..1973776	-	173	18313967	-	PAE3292	-	putative NTPase
2325	 46.72	0	1973819..1974610	-	263	18313968	-	PAE3294	-	polyprenyl synthetase
2326	 43.92	-1	1974652..1974840	-	62	18313969	-	PAE3295	-	hypothetical protein
2327	 49.01	0	1974924..1975376	+	150	18313970	ribH	PAE3296	-	riboflavin synthase subunit beta
2328	 47.04	0	1975373..1976284	-	303	18313971	-	PAE3297	-	branched-chain amino acid aminotransferase
2329	 48.53	0	1976281..1977267	-	328	18313972	-	PAE3298	-	ketol-acid reductoisomerase
2330	 43.86	-1	1977280..1977507	-	75	18313973	-	PAE3299	-	acetolactate synthase small subunit
2331	 47.70	0	1977497..1979167	-	556	18313974	-	PAE3300	-	acetolactate synthase large subunit (ilvB)
2332	 43.99	-1	1979284..1979724	-	146	18313975	-	PAE3301	-	mutT/nudix family protein
2333	 42.71	-1	1979774..1980274	+	166	18313976	-	PAE3303	-	hypothetical protein
2334	 44.44	-1	1980249..1980563	-	104	18313977	-	PAE3304	-	hypothetical protein
2335	 47.56	0	1981116..1982408	-	430	18313978	-	PAE3309	-	mRNA 3'-end processing factor, conjectural
2336	 45.16	-1	1982618..1982989	+	123	18313979	rpl24p	PAE3312	-	50S ribosomal protein L24P
2337	 46.72	0	1982994..1983710	+	238	18313980	-	PAE3313	-	30S ribosomal protein S4e
2338	 46.85	0	1983707..1984135	-	142	18313981	-	PAE3314	-	hypothetical protein
2339	 46.69	0	1984167..1985132	-	321	18313982	-	PAE3316	-	oligopeptide transport ATP-binding protein, putative
2340	 46.23	-1	1985135..1986103	-	322	18313983	-	PAE3317	-	oligopeptide transport ATP-binding protein, putative
2341	 48.91	0	1986150..1986932	+	260	18313984	-	PAE3318	-	kinase, conjectural
2342	 44.02	-1	1986898..1987758	-	286	18313985	-	PAE3319	-	hypothetical protein
2343	 46.21	-1	1987908..1988831	+	307	18313986	-	PAE3320	-	D-3-phosphoglycerate dehydrogenase (serA)
2344	 47.84	0	1988828..1989847	+	339	18313987	-	PAE3321	-	aminotransferase (class 5)
2345	 47.67	0	1989828..1990622	+	264	18313988	-	PAE3323	-	hypothetical protein
2346	 43.26	-1	1990603..1991025	-	140	18313989	-	PAE3324	-	hypothetical protein
2347	 45.71	-1	1991088..1992347	-	419	18313990	-	PAE3325	-	tRNA CCA-pyrophosphorylase
2348	 43.26	-1	1992344..1992907	-	187	18313991	-	PAE3326	-	hypothetical protein
2349	 44.52	-1	1992904..1993341	-	145	18313992	-	PAE3327	-	DNA binding transcriptional repressor, conjectural
2350	 46.71	0	1993374..1994270	-	298	18313993	-	PAE3329	-	transcription initiation factor IIB (TFIIB)
2351	 42.17	-1	1994267..1994515	-	82	161485619	-	PAE3330	-	H/ACA RNA-protein complex component Gar1
2352	 47.98	0	1994625..1995020	+	131	18313995	-	PAE3331	-	30S ribosomal protein S8e
2353	 47.22	0	1995017..1995304	+	95	18313996	-	PAE3332	-	signal recognition particle
2354	 46.13	-1	1995304..1996053	+	249	18313997	-	PAE3333	-	GTPase
2355	 45.21	-1	1996038..1996340	-	100	18313998	-	PAE3334	-	50S ribosomal protein L21e
2356	 41.96	-1	1996428..1996763	+	111	18313999	-	PAE3335	-	hypothetical protein
2357	 43.08	-1	1996760..1997344	+	194	18314000	-	PAE3336	-	hypothetical protein
2358	 48.12	0	1997346..1997744	-	132	18314001	-	PAE3337	-	translation initiation factor IF-5A
2359	 50.83	0	1997775..1998614	-	279	18314002	-	PAE3338	-	5'-methylthioadenosine phosphorylase II
2360	 49.90	0	1998646..1999134	+	162	18314003	-	PAE3339	-	hypothetical protein
2361	 43.80	-1	1999160..1999522	+	120	18314004	-	PAE3340	-	translation initiation factor SUI1-like protein
2362	 47.39	0	1999780..2000277	-	165	18314005	-	PAE3342	-	hypothetical protein
2363	 49.13	0	2000331..2002223	-	630	18314006	argS	PAE3343	-	arginyl-tRNA synthetase
2364	 49.57	0	2002290..2002523	+	77	18314007	rps28e	PAE3344	-	30S ribosomal protein S28e
2365	 46.89	0	2002520..2002696	+	58	18314008	-	PAE3345	-	ribosomal protein L24
2366	 51.32	0	2002697..2003152	-	151	18314009	rpl7ae	PAE3347	-	50S ribosomal protein L7Ae
2367	 44.41	-1	2003184..2004275	-	363	18314010	-	PAE3348	-	branched-chain amino acid transport permease protein
2368	 43.12	-1	2004272..2005231	-	319	18314011	-	PAE3350	-	branched-chain amino acid transport permease protein
2369	 49.85	0	2005342..2006691	+	449	18314012	-	PAE3353	-	branched-chain amino acid binding protein
2370	 45.40	-1	2006724..2007494	+	256	18314013	-	PAE3354	-	branched-chain amino acid transport ATP-binding protein
2371	 47.58	0	2007897..2010269	+	790	18314014	-	PAE3356	-	hypothetical protein
2372	 49.33	0	2010262..2011686	+	474	18314015	-	PAE3357	-	antibiotic resistance (efflux) protein, conjectural
2373	 52.93	0	2011696..2012787	+	363	18314016	-	PAE3359	-	hypothetical protein
2374	 48.10	0	2012769..2013188	+	139	18314017	-	PAE3361	-	hypothetical protein
2375	 45.98	-1	2013263..2014108	+	281	18314018	-	PAE3364	-	hypothetical protein
2376	 47.93	0	2014139..2015440	+	433	18314019	-	PAE3365	-	signal recognition particle
2377	 48.35	0	2015524..2015916	+	130	18314020	-	PAE3367	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.