IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2185	 55.24	0	1848054..1848998	+	314	18313828	-	PAE3108	-	mevalonate kinase
2186	 44.87	-1	1848995..1849228	+	77	18313829	-	PAE3109	-	hypothetical protein
2187	 56.87	+1	1849244..1850029	+	261	18313830	-	PAE3111	-	uridine phosphorylase
2188	 45.15	-1	1850001..1850237	+	78	18313831	-	PAE3112	-	hypothetical protein
2189	 49.18	0	1850260..1850688	+	142	18313832	-	PAE3113	-	hypothetical protein
2190	 52.71	0	1850685..1852232	-	515	18313833	-	PAE3114	-	nicotinate-nucleotide pyrophosphorylase and protein
2191	 50.22	0	1852229..1853152	-	307	18313834	-	PAE3115	-	quinolinate synthetase
2192	 52.95	0	1853256..1854137	-	293	18313835	-	PAE3116	-	hypothetical protein
2193	 51.15	0	1854146..1854493	-	115	18313836	-	PAE3117	-	small heat shock protein, hsp20 homolog, conjectural
2194	 51.40	0	1854520..1855410	-	296	18313837	-	PAE3118	-	ribose ABC transporter, permease protein
2195	 54.96	0	1855407..1856414	-	335	18313838	-	PAE3119	-	ribose ABC transporter, permease protein
2196	 50.38	0	1856411..1857847	-	478	18313839	-	PAE3120	-	ribose ABC transport system ATP-binding
2197	 51.93	0	1857847..1859088	-	413	18313840	-	PAE3121	-	sugar binding protein
2198	 46.90	0	1859111..1859449	-	112	18313841	-	PAE3123	-	hypothetical protein
2199	 48.68	0	1859433..1861523	-	696	18313842	-	PAE3124	-	penicillin amidase
2200	 45.51	-1	1861604..1862137	-	177	18313843	-	PAE3125	-	hypothetical protein
2201	 43.03	-1	1862107..1863570	-	487	18313844	-	PAE3127	-	hypothetical protein
2202	 44.71	-1	1863667..1864431	-	254	18313845	-	PAE3129	-	hypothetical protein
2203	 51.78	0	1864581..1864889	+	102	18313846	-	PAE3130	-	hypothetical protein
2204	 48.00	0	1864890..1865189	+	99	18313847	-	PAE3132	-	hypothetical protein
2205	 52.33	0	1865372..1866613	+	413	18313848	-	PAE3134	-	hypothetical protein
2206	 50.50	0	1866650..1867447	+	265	18313849	-	PAE3135	-	hypothetical protein
2207	 53.56	0	1867554..1867988	+	144	18313850	rpl14p	PAE3136	-	50S ribosomal protein L14P
2208	 49.84	0	1868056..1868376	+	106	18313851	-	PAE3137	-	hypothetical protein
2209	 48.66	0	1868358..1868729	+	123	18313852	-	PAE3138	-	hypothetical protein
2210	 51.29	0	1868763..1870076	-	437	18313853	-	PAE3140	-	S-adenosyl-L-homocysteine hydrolase
2211	 52.02	0	1870244..1870837	-	197	18313854	-	PAE3141	-	hypothetical protein
2212	 54.61	0	1871674..1872519	+	281	18313855	-	PAE3143	-	hypothetical protein
2213	 50.34	0	1872521..1872955	+	144	18313856	-	PAE3144	-	hypothetical protein
2214	 50.08	0	1872946..1873608	+	220	18313857	-	PAE3145	-	hypothetical protein
2215	 51.65	0	1873600..1874904	-	434	18313858	-	PAE3146	-	hypothetical protein
2216	 51.68	0	1875008..1875601	+	197	18313859	-	PAE3148	-	hypothetical protein
2217	 55.49	0	1875563..1876045	-	160	18313860	-	PAE3151	-	hypothetical protein
2218	 50.10	0	1876042..1876542	-	166	18313861	-	PAE3152	-	thiol:disulphide interchange protein, putative
2219	 50.96	0	1876657..1877388	+	243	18313862	-	PAE3153	-	hypothetical protein
2220	 55.10	0	1877462..1880011	+	849	18313863	-	PAE3155	-	ribonucleotide reductase
2221	 48.85	0	1880063..1880539	+	158	18313864	-	PAE3156	-	hypothetical protein
2222	 45.93	-1	1880574..1880843	+	89	18313865	-	PAE3157	-	hypothetical protein
2223	 49.12	0	1880874..1882229	+	451	18313866	-	PAE3158	-	seryl-tRNA synthetase
2224	 50.61	0	1882342..1882995	-	217	18313867	pyrH	PAE3159	-	uridylate kinase
2225	 49.62	0	1882979..1883500	-	173	18313868	-	PAE3161	-	hypothetical protein
2226	 51.93	0	1883749..1884162	+	137	18313869	-	PAE3162	-	HIT family protein
2227	 52.04	0	1884193..1884657	+	154	18313870	-	PAE3163	-	LuxR family regulatory protein conjectural
2228	 52.67	0	1884650..1885849	-	399	18313871	-	PAE3165	-	translation-associated GTPase
2229	 52.85	0	1885991..1886113	+	40	18313872	-	PAE3166	-	paREP2a
2230	 54.84	0	1886180..1887397	+	405	18313873	-	PAE3167	-	hypothetical protein
2231	 53.17	0	1887427..1889397	+	656	18313874	-	PAE3169	-	hypothetical protein
2232	 53.54	0	1889431..1891647	+	738	18313875	-	PAE3171	-	AAA family ATPase, CDC48 subfamily protein
2233	 49.62	0	1891678..1892205	+	175	18313876	-	PAE3172	-	small heat shock protein, hsp20 homolog, conjectural
2234	 48.44	0	1892202..1892651	-	149	18313877	-	PAE3173	-	hypothetical protein
2235	 57.25	+1	1892717..1893820	+	367	18313878	-	PAE3175	-	hypothetical protein
2236	 52.80	0	1893887..1894225	+	112	18313879	-	PAE3176	-	hypothetical protein
2237	 53.27	0	1894255..1894575	+	106	18313880	-	PAE3177	-	hypothetical protein
2238	 57.96	+1	1894599..1895000	+	133	18313881	rps11p	PAE3179	-	30S ribosomal protein S11P
2239	 52.01	0	1895000..1895272	+	90	18313882	-	PAE3180	-	hypothetical protein
2240	 51.93	0	1895552..1897057	+	501	18313883	-	PAE3182	-	hypothetical protein
2241	 57.89	+1	1897231..1897344	-	37	18313884	-	PAE3183	-	hypothetical protein
2242	 56.04	0	1897479..1898570	+	363	18313885	-	PAE3184	-	pyruvate formate-lyase activating enzyme-like protein
2243	 54.50	0	1899907..1900284	+	125	18313886	-	PAE3185	-	paREP9, associated with SRSRs
2244	 51.45	0	1900588..1901244	+	218	18313887	-	PAE3187	-	hypothetical protein
2245	 58.95	+1	1901244..1902008	+	254	18313888	-	PAE3188	-	hypothetical protein
2246	 56.40	0	1901965..1902636	-	223	18313889	-	PAE3189	-	hypothetical protein
2247	 47.70	0	1902668..1902841	-	57	18313890	-	PAE3192	-	paREP4
2248	 64.44	+2	1902925..1903014	+	29	18313891	-	PAE3193	-	hypothetical protein
2249	 62.62	+2	1903036..1903455	+	139	18313892	-	PAE3193a	-	hypothetical protein
2250	 57.44	+1	1903367..1903951	+	194	18313893	-	PAE3195	-	hypothetical protein
2251	 65.27	+2	1904252..1905253	+	333	18313894	-	PAE3196	-	hypothetical protein
2252	 49.03	0	1905244..1907256	-	670	18313895	-	PAE3197	-	hypothetical protein
2253	 45.32	-1	1907253..1911080	-	1275	18313896	-	PAE3198	-	ATP-dependant helicase,
2254	 51.08	0	1911260..1911952	-	230	18313897	-	PAE3199	-	U/G & T/G mismatch specific glycosylase (PA-MIG)
2255	 43.02	-1	1911993..1913024	+	343	18313898	-	PAE3200	-	hypothetical protein
2256	 52.16	0	1913015..1914406	-	463	18313899	-	PAE3201	-	C-5 cytosine-specific DNA methylase
2257	 57.09	+1	1914869..1915129	+	86	18313900	-	PAE3202	-	hypothetical protein
2258	 61.04	+1	1915250..1916245	+	331	18313901	-	PAE3203	-	hypothetical protein
2259	 63.44	+2	1916232..1917500	+	422	18313902	-	PAE3204	-	hypothetical protein
2260	 65.60	+2	1917475..1918131	+	218	18313903	-	PAE3205	-	hypothetical protein
2261	 56.36	0	1918181..1918636	+	151	18313904	-	PAE3206	-	paREP8
2262	 53.55	0	1918759..1919223	+	154	18313905	-	PAE3207	-	paREP8
2263	 51.90	0	1919555..1921105	+	516	18313906	-	PAE3208	-	helix-turn-helix protein
2264	 53.26	0	1921102..1921944	+	280	18313907	-	PAE3209	-	hypothetical protein
2265	 44.09	-1	1921952..1922044	-	30	18313908	-	PAE3209a	-	hypothetical protein
2266	 58.33	+1	1922134..1922829	+	231	18313909	-	PAE3211	-	hypothetical protein
2267	 45.97	-1	1922864..1923607	+	247	18313910	-	PAE3212	-	hypothetical protein
2268	 44.44	-1	1923611..1924420	+	269	18313911	-	PAE3214	-	hypothetical protein
2269	 52.17	0	1924912..1925904	-	330	18313912	-	PAE3215	-	hypothetical protein
2270	 51.70	0	1925964..1927520	+	518	18313913	-	PAE3216	-	ATPase
2271	 48.53	0	1927517..1928266	+	249	18313914	-	PAE3217	-	hypothetical protein
2272	 52.43	0	1928256..1929119	-	287	18313915	-	PAE3218	-	hypothetical protein
2273	 55.52	0	1929123..1930181	-	352	18313916	-	PAE3219	-	paREP2b
2274	 52.30	0	1930221..1930394	-	57	18313917	-	PAE3220	-	paREP2b
2275	 55.90	0	1930451..1931137	-	228	18313918	-	PAE3221	-	dimethyladenosine transferase
2276	 53.48	0	1931170..1932996	+	608	18313919	-	PAE3222	-	glutamyl-tRNA(Gln) amidotransferase subunit E
2277	 49.02	0	1933217..1933471	+	84	18313920	-	PAE3224	-	ribosomal protein L34
2278	 47.03	0	1933477..1934031	+	184	18313921	-	PAE3225	-	cytidylate kinase
2279	 54.12	0	1934085..1935128	+	347	18313922	-	PAE3227	-	putative glutamate synthase subunit beta
2280	 50.42	0	1935129..1935836	-	235	18313923	-	PAE3228	-	fibrillarin
2281	 51.34	0	1936064..1937329	-	421	18313924	-	PAE3232	-	nop family pre-rRNA processing protein
2282	 55.68	0	1937914..1938468	+	184	18313925	-	PAE3235	-	paREP1
2283	 49.74	0	1938496..1939842	-	448	18313926	-	PAE3237	-	beta-lactamase-like protein
2284	 53.85	0	1939845..1940780	-	311	18313927	-	PAE3238	-	DNA repair protein radA
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.