IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2114	 58.54	+1	1790290..1790412	-	40	18313757	-	PAE3006	-	paREP2a
2115	 51.82	0	1790419..1790802	-	127	18313758	-	PAE3007	-	paREP2a
2116	 53.97	0	1790812..1792032	+	406	18313759	-	PAE3008	-	paREP2b
2117	 50.39	0	1792431..1793069	+	212	18313760	-	PAE3009	-	hypothetical protein
2118	 56.35	0	1793082..1793585	-	167	18313761	-	PAE3010	-	hypothetical protein
2119	 49.64	0	1793711..1794826	-	371	18313762	-	PAE3011	-	hypothetical protein
2120	 48.55	0	1795152..1795427	-	91	18313763	-	PAE3014	-	hypothetical protein
2121	 49.23	0	1795399..1796115	-	238	18313764	-	PAE3015	-	hypothetical protein
2122	 50.70	0	1796296..1796508	-	70	18313765	-	PAE3016	-	hypothetical protein
2123	 47.09	0	1796589..1797017	-	142	18313766	-	PAE3017	-	hypothetical protein
2124	 50.26	0	1797426..1797614	-	62	18313767	-	PAE3020	-	hypothetical protein
2125	 60.69	+1	1798431..1799183	+	250	18313768	-	PAE3023	-	carbon nitrogen hydrolase, conjectural
2126	 55.49	0	1799463..1800554	-	363	18313769	-	PAE3024	-	sugar-phosphate nucleotidyl transferase
2127	 55.17	0	1800556..1802364	-	602	18313770	-	PAE3025	-	D-fructose-6-phosphate amidotransferase
2128	 54.78	0	1802425..1803375	-	316	18313771	-	PAE3027	-	hypothetical protein
2129	 53.37	0	1803491..1804024	+	177	18313772	-	PAE3028	-	hypothetical protein
2130	 53.14	0	1804297..1806654	+	785	18313773	-	PAE3030	-	oligosaccharyl transferase STT3-like protein
2131	 46.58	0	1806644..1806862	-	72	18313774	-	PAE3031	-	H/ACA RNA-protein complex component Nop10p
2132	 46.62	0	1806859..1807656	-	265	18313775	-	PAE3032	-	translation initiation factor IF-2 subunit alpha
2133	 55.39	0	1807697..1807900	-	67	18313776	rps27e	PAE3033	-	30S ribosomal protein S27e
2134	 45.29	-1	1807902..1808177	-	91	18313777	rpl44e	PAE3034	-	50S ribosomal protein L44e
2135	 50.72	0	1808209..1808691	-	160	18313778	-	PAE3035	-	hypothetical protein
2136	 47.71	0	1808684..1809622	-	312	18313779	-	PAE3036	-	DNA primase related protein
2137	 48.93	0	1809619..1810368	-	249	18313780	-	PAE3038	-	proliferating-cell nuclear antigen homolog (PCNA)
2138	 49.85	0	1810471..1810803	-	110	18313781	-	PAE3040	-	putative DNA-directed RNA polymerase subunit M
2139	 52.41	0	1810905..1811381	+	158	18313782	-	PAE3043	-	30S ribosomal protein S19e
2140	 54.05	0	1811381..1811713	+	110	18313783	-	PAE3044	-	hypothetical protein
2141	 49.12	0	1811751..1811807	+	18	18313784	-	PAE3044a	-	ribosomal protein L39E, frameshift
2142	 49.44	0	1811898..1812617	-	239	18313785	-	PAE3045	-	geranylgeranylglyceryl phosphate synthase-like protein
2143	 49.67	0	1812604..1812909	-	101	18313786	-	PAE3047	-	hypothetical protein
2144	 54.61	0	1813039..1814274	+	411	18313787	-	PAE3048	-	molybdenum cofactor biosynthesis protein (moaA)
2145	 50.08	0	1814254..1814916	-	220	18313788	-	PAE3049	-	phosphoribosyl transferase
2146	 53.33	0	1814958..1815947	-	329	18313789	-	PAE3051	-	hypothetical protein
2147	 45.99	-1	1816041..1816427	-	128	18313790	-	PAE3053	-	hypothetical protein
2148	 54.58	0	1816411..1817163	-	250	18313791	-	PAE3055	-	extragenic suppressor protein suhB-like protein
2149	 50.49	0	1817287..1818312	-	341	18313792	-	PAE3057	-	hypothetical protein
2150	 53.33	0	1818452..1818691	-	79	18313793	-	PAE3058	-	hypothetical protein
2151	 44.78	-1	1819970..1820362	-	130	18313794	-	PAE3060	-	hypothetical protein
2152	 46.58	0	1820389..1820607	+	72	18313795	-	PAE3062	-	hypothetical protein
2153	 47.53	0	1820978..1822618	+	546	18313796	-	PAE3063	-	hypothetical protein
2154	 50.33	0	1822587..1823351	-	254	18313797	-	PAE3064	-	ABC-2 type transport system, membrane protein
2155	 54.33	0	1823344..1824105	-	253	18313798	-	PAE3065	-	ABC-2 type transport system, membrane protein
2156	 51.98	0	1824077..1825009	-	310	18313799	-	PAE3066	-	ABC-2 type transport system ATP-binding protein
2157	 54.73	0	1825713..1826315	+	200	18313800	-	PAE3068	-	phosphoglycolate phosphatase (pgp), conjectural
2158	 51.52	0	1826870..1827133	-	87	18313801	-	PAE3072	-	paREP2b
2159	 62.50	+2	1827370..1827465	-	31	18313802	-	PAE3075	-	paREP2b
2160	 56.86	+1	1827570..1828589	+	339	18313803	-	PAE3076	-	hypothetical protein
2161	 49.21	0	1828771..1828959	+	62	18313804	-	PAE3077	-	hypothetical protein
2162	 53.92	0	1829177..1829890	-	237	18313805	-	PAE3079	-	hypothetical protein
2163	 49.15	0	1829929..1830282	+	117	18313806	-	PAE3080	-	hypothetical protein
2164	 51.24	0	1830313..1830513	+	66	18313807	-	PAE3081	-	hypothetical protein
2165	 57.22	+1	1830510..1831409	-	299	18313808	-	PAE3083	-	asparaginase
2166	 52.50	0	1831406..1831885	-	159	18313809	rps4p	PAE3084	-	30S ribosomal protein S4
2167	 53.59	0	1831917..1832375	-	152	18313810	rps13p	PAE3085	-	30S ribosomal protein S13P
2168	 41.60	-1	1832404..1833819	-	471	18313811	-	PAE3086	-	oligopeptide ABC transporter, permease protein
2169	 42.48	-1	1833816..1834886	-	356	18313812	-	PAE3087	-	oligopeptide ABC transporter, permease protein
2170	 45.82	-1	1834936..1837530	-	864	18313813	-	PAE3088	-	oligopeptide binding protein, putative
2171	 49.96	0	1837776..1838930	-	384	18313814	-	PAE3090	-	pullulanase
2172	 52.39	0	1839545..1840672	-	375	18313815	-	PAE3091	-	tryptophanyl-tRNA synthetase
2173	 53.24	0	1840707..1841369	-	220	18313816	-	PAE3092	-	DNA-(apurinic or apyrimidinic site) lyase, conjectural
2174	 55.03	0	1841444..1842208	-	254	18313817	-	PAE3093	-	molybdenum cofactor biosynthesis protein (moaA)
2175	 48.91	0	1842418..1842693	+	91	18313818	-	PAE3095	-	ribosomal protein L31
2176	 53.54	0	1842693..1843355	+	220	18313819	-	PAE3097	-	translation initiation factor IF-6
2177	 44.30	-1	1843412..1843648	+	78	18313820	-	PAE3098	-	ribosomal protein LX
2178	 55.64	0	1843650..1844048	+	132	18313821	-	PAE3099	-	prefoldin subunit alpha
2179	 48.91	0	1844048..1844965	+	305	18313822	-	PAE3100	-	signal recognition particle protein
2180	 46.67	0	1844995..1845294	+	99	18313823	-	PAE3102	-	hypothetical protein
2181	 50.43	0	1845296..1845757	+	153	18313824	nusG	PAE3103	-	transcription antitermination protein NusG
2182	 47.42	0	1845793..1846296	+	167	18313825	-	PAE3104	-	ribosomal protein L11
2183	 51.42	0	1846293..1846961	+	222	18313826	rpl1P	PAE3106	-	50S ribosomal protein L1P
2184	 53.28	0	1847001..1848038	+	345	18313827	rplP0	PAE3107	-	acidic ribosomal protein P0
2185	 55.24	0	1848054..1848998	+	314	18313828	-	PAE3108	-	mevalonate kinase
2186	 44.87	-1	1848995..1849228	+	77	18313829	-	PAE3109	-	hypothetical protein
2187	 56.87	+1	1849244..1850029	+	261	18313830	-	PAE3111	-	uridine phosphorylase
2188	 45.15	-1	1850001..1850237	+	78	18313831	-	PAE3112	-	hypothetical protein
2189	 49.18	0	1850260..1850688	+	142	18313832	-	PAE3113	-	hypothetical protein
2190	 52.71	0	1850685..1852232	-	515	18313833	-	PAE3114	-	nicotinate-nucleotide pyrophosphorylase and protein
2191	 50.22	0	1852229..1853152	-	307	18313834	-	PAE3115	-	quinolinate synthetase
2192	 52.95	0	1853256..1854137	-	293	18313835	-	PAE3116	-	hypothetical protein
2193	 51.15	0	1854146..1854493	-	115	18313836	-	PAE3117	-	small heat shock protein, hsp20 homolog, conjectural
2194	 51.40	0	1854520..1855410	-	296	18313837	-	PAE3118	-	ribose ABC transporter, permease protein
2195	 54.96	0	1855407..1856414	-	335	18313838	-	PAE3119	-	ribose ABC transporter, permease protein
2196	 50.38	0	1856411..1857847	-	478	18313839	-	PAE3120	-	ribose ABC transport system ATP-binding
2197	 51.93	0	1857847..1859088	-	413	18313840	-	PAE3121	-	sugar binding protein
2198	 46.90	0	1859111..1859449	-	112	18313841	-	PAE3123	-	hypothetical protein
2199	 48.68	0	1859433..1861523	-	696	18313842	-	PAE3124	-	penicillin amidase
2200	 45.51	-1	1861604..1862137	-	177	18313843	-	PAE3125	-	hypothetical protein
2201	 43.03	-1	1862107..1863570	-	487	18313844	-	PAE3127	-	hypothetical protein
2202	 44.71	-1	1863667..1864431	-	254	18313845	-	PAE3129	-	hypothetical protein
2203	 51.78	0	1864581..1864889	+	102	18313846	-	PAE3130	-	hypothetical protein
2204	 48.00	0	1864890..1865189	+	99	18313847	-	PAE3132	-	hypothetical protein
2205	 52.33	0	1865372..1866613	+	413	18313848	-	PAE3134	-	hypothetical protein
2206	 50.50	0	1866650..1867447	+	265	18313849	-	PAE3135	-	hypothetical protein
2207	 53.56	0	1867554..1867988	+	144	18313850	rpl14p	PAE3136	-	50S ribosomal protein L14P
2208	 49.84	0	1868056..1868376	+	106	18313851	-	PAE3137	-	hypothetical protein
2209	 48.66	0	1868358..1868729	+	123	18313852	-	PAE3138	-	hypothetical protein
2210	 51.29	0	1868763..1870076	-	437	18313853	-	PAE3140	-	S-adenosyl-L-homocysteine hydrolase
2211	 52.02	0	1870244..1870837	-	197	18313854	-	PAE3141	-	hypothetical protein
2212	 54.61	0	1871674..1872519	+	281	18313855	-	PAE3143	-	hypothetical protein
2213	 50.34	0	1872521..1872955	+	144	18313856	-	PAE3144	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.