IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2011	 55.12	0	1702190..1702492	+	100	18313654	-	PAE2875	-	hypothetical protein
2012	 56.27	0	1702533..1703552	-	339	18313655	-	PAE2876	-	aspartate-semialdehyde dehydrogenase
2013	 55.32	0	1703565..1704560	-	331	18313656	-	PAE2877	-	aspartate kinase
2014	 55.01	0	1704557..1705603	-	348	18313657	-	PAE2878	-	threonine synthase
2015	 51.44	0	1706071..1706451	+	126	18313658	-	PAE2879	-	hypothetical protein
2016	 52.18	0	1706448..1707503	+	351	18313659	argC	PAE2881	-	N-acetyl-gamma-glutamyl-phosphate reductase
2017	 51.65	0	1707500..1708285	+	261	18313660	-	PAE2882	-	acetylglutamate kinase
2018	 51.61	0	1708356..1708541	+	61	18313661	-	PAE2883	-	hypothetical protein
2019	 56.78	+1	1708785..1709735	+	316	18313662	-	PAE2884	-	argininosuccinate synthase (argG)
2020	 44.87	-1	1709784..1709939	+	51	18313663	-	PAE2886	-	hypothetical protein
2021	 54.03	0	1709939..1711228	+	429	18313664	-	PAE2887	-	argininosuccinate lyase
2022	 53.11	0	1711482..1712027	-	181	18313665	-	PAE2889	-	hypothetical protein
2023	 52.47	0	1712141..1713112	+	323	18313666	-	PAE2890	-	spermidine/putrescine transport ATP-binding protein
2024	 52.05	0	1713109..1713840	+	243	18313667	-	PAE2891	-	spermidine/putrescine transport permease protein
2025	 51.97	0	1713837..1714598	+	253	18313668	-	PAE2893	-	spermidine/putrescine transport permease protein
2026	 52.96	0	1714849..1715928	-	359	18313669	-	PAE2895	-	hypothetical protein
2027	 47.72	0	1715925..1717175	-	416	18313670	-	PAE2897	-	hypothetical protein
2028	 45.71	-1	1717205..1717624	-	139	18313671	-	PAE2898	-	hypothetical protein
2029	 44.93	-1	1717645..1718937	-	430	18313672	-	PAE2899	-	hypothetical protein
2030	 46.25	-1	1718937..1720043	-	368	18313673	-	PAE2901	-	hypothetical protein
2031	 47.88	0	1720197..1721468	+	423	18313674	-	PAE2902	-	hypothetical protein
2032	 51.51	0	1721465..1723291	+	608	18313675	-	PAE2903	-	hypothetical protein
2033	 53.71	0	1723288..1724445	+	385	18313676	-	PAE2904	-	exonuclease sbcD, conjectural
2034	 51.26	0	1724438..1726546	+	702	18313677	-	PAE2905	-	purine NTPase,
2035	 50.30	0	1726549..1727715	-	388	18313678	-	PAE2906	-	peptide chain release factor 1
2036	 47.66	0	1727794..1728114	+	106	18313679	rps10p	PAE2907	-	30S ribosomal protein S10P
2037	 54.56	0	1728146..1728946	+	266	18313680	-	PAE2908	-	surE stationary-phase survival protein
2038	 49.45	0	1728943..1729767	+	274	18313681	-	PAE2910	-	hypothetical protein
2039	 46.97	0	1729739..1730002	-	87	18313682	-	PAE2911	-	hypothetical protein
2040	 54.53	0	1730031..1730681	-	216	18313683	-	PAE2913	-	hypothetical protein
2041	 52.76	0	1730700..1731605	-	301	18313684	-	PAE2915	-	dihydrodipicolinate synthase
2042	 59.26	+1	1731685..1731846	+	53	18313685	-	PAE2916	-	hypothetical protein
2043	 52.77	0	1731870..1733243	+	457	18313686	-	PAE2918	-	tldD, putative modulator of DNA gyrase
2044	 50.93	0	1733240..1734523	+	427	18313687	-	PAE2919	-	pmbA, putative modulator of DNA gyrase
2045	 56.44	0	1734657..1734881	-	74	18313688	-	PAE2921	-	paREP10
2046	 50.85	0	1735149..1736330	-	393	18313689	-	PAE2923	-	hypothetical protein
2047	 43.49	-1	1736327..1736779	-	150	18313690	-	PAE2924	-	hypothetical protein
2048	 57.40	+1	1736928..1738211	+	427	18313691	-	PAE2925	-	resistance protein, conjectural
2049	 55.62	0	1738200..1738733	-	177	18313692	-	PAE2926	-	NADH-ubiquinone oxidoreductase subunit
2050	 56.37	0	1738736..1739308	-	190	18313693	-	PAE2928	-	NADH-ubiquinone oxidoreductase subunit
2051	 52.20	0	1739405..1740358	-	317	18313694	-	PAE2929	-	aldo-keto reductase, putative
2052	 48.02	0	1740816..1741877	-	353	18313695	-	PAE2931	-	alcohol dehydrogenase (Zinc)
2053	 47.96	0	1741874..1742290	-	138	18313696	-	PAE2932	-	hypothetical protein
2054	 49.67	0	1742585..1743343	-	252	18313697	-	PAE2934	-	hypothetical protein
2055	 49.33	0	1743400..1743924	+	174	18313698	-	PAE2935	-	hypothetical protein
2056	 55.21	0	1743917..1744501	+	194	18313699	-	PAE2936	-	hypothetical protein
2057	 56.30	0	1744484..1745380	-	298	18313700	-	PAE2937	-	dihydropteroate synthase
2058	 46.86	0	1745467..1745769	+	100	18313701	-	PAE2938	-	hypothetical protein
2059	 53.08	0	1745792..1747042	+	416	18313702	-	PAE2939	-	hypothetical protein
2060	 50.55	0	1747151..1748863	-	570	18313703	-	PAE2940	-	methionyl-tRNA synthetase
2061	 49.03	0	1748886..1749503	-	205	18313704	-	PAE2941	-	hypothetical protein
2062	 49.23	0	1749503..1750219	-	238	18313705	-	PAE2942	-	hypothetical protein
2063	 51.99	0	1750197..1750523	-	108	18313706	-	PAE2942a	-	methionyl-tRNA synthetase beta subunit
2064	 45.13	-1	1750569..1751534	+	321	18313707	-	PAE2944	-	hypothetical protein
2065	 50.38	0	1751675..1752067	-	130	18313708	-	PAE2945	-	hypothetical protein
2066	 47.92	0	1752073..1754499	-	808	18313709	-	PAE2946	-	hypothetical protein
2067	 49.54	0	1754465..1755217	+	250	18313710	-	PAE2947	-	hypothetical protein
2068	 52.94	0	1755204..1755968	-	254	18313711	-	PAE2948	-	hypothetical protein
2069	 52.17	0	1755965..1756171	-	68	18313712	-	PAE2949	-	hypothetical protein
2070	 48.25	0	1756212..1756526	-	104	18313713	-	PAE2950	-	hypothetical protein
2071	 50.40	0	1756574..1757710	+	378	18313714	-	PAE2951	-	hypothetical protein
2072	 51.74	0	1758011..1758814	+	267	18313715	-	PAE2954	-	solute-binding family 3 protein
2073	 54.90	0	1758799..1759206	+	135	18313716	-	PAE2955	-	hypothetical protein
2074	 52.38	0	1759755..1760363	+	202	18313717	-	PAE2958	-	hypothetical protein
2075	 53.20	0	1760324..1761088	+	254	18313718	-	PAE2959	-	NAD-dependent deacetylase
2076	 49.43	0	1761069..1761590	-	173	18313719	-	PAE2960	-	hypothetical protein
2077	 47.62	0	1761587..1762006	-	139	18313720	-	PAE2961	-	hypothetical protein
2078	 47.27	0	1762029..1762358	-	109	18313721	-	PAE2964	-	hypothetical protein
2079	 50.70	0	1762355..1762780	-	141	18313722	-	PAE2965	-	hypothetical protein
2080	 46.38	-1	1762777..1762914	-	45	18313723	-	PAE2966	-	hypothetical protein
2081	 43.19	-1	1762911..1763123	-	70	18313724	-	PAE2967	-	hypothetical protein
2082	 53.28	0	1763197..1763883	+	228	18313725	-	PAE2968	-	sugar-phosphate nucleotidyl transferase, putative
2083	 52.60	0	1763873..1765585	+	570	18313726	gltX	PAE2969	-	glutamyl-tRNA synthetase
2084	 53.17	0	1765578..1766570	+	330	18313727	-	PAE2970	-	hypothetical protein
2085	 48.72	0	1766599..1766988	+	129	18313728	-	PAE2971	-	hypothetical protein
2086	 52.82	0	1766954..1767538	-	194	18313729	-	PAE2972	-	hypothetical protein
2087	 52.78	0	1767516..1768811	-	431	18313730	-	PAE2973	-	asparaginyl-tRNA synthetase
2088	 48.59	0	1768815..1769063	-	82	18313731	-	PAE2975	-	hypothetical protein
2089	 52.28	0	1769060..1769872	-	270	18313732	-	PAE2977	-	3-hydroxyisobutyrate dehydrogenase, putative
2090	 54.75	0	1769921..1770952	+	343	18313733	-	PAE2978	-	sua5 family protein
2091	 48.72	0	1770949..1771728	+	259	18313734	-	PAE2979	-	methyltransferase
2092	 51.35	0	1771753..1772607	+	284	18313735	-	PAE2980	-	ribose-phosphate pyrophosphokinase
2093	 53.61	0	1772602..1773612	-	336	18313736	-	PAE2981	-	acetylpolyamine aminohydrolase, putative
2094	 47.40	0	1773672..1773863	+	63	18313737	-	PAE2982	-	hypothetical protein
2095	 49.52	0	1773841..1774470	-	209	18313738	-	PAE2983	-	hypothetical protein
2096	 51.50	0	1774557..1775222	+	221	18313739	-	PAE2984	-	hypothetical protein
2097	 49.85	0	1775219..1775902	+	227	18313740	-	PAE2985	-	hypothetical protein
2098	 53.89	0	1775910..1776551	+	213	18313741	-	PAE2986	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2099	 44.44	-1	1776535..1776948	-	137	18313742	-	PAE2987	-	hypothetical protein
2100	 54.22	0	1777001..1778077	+	358	18313743	-	PAE2989	-	hypothetical protein
2101	 53.75	0	1778072..1779232	-	386	18313744	-	PAE2990	-	nicotinate phosphoribosyltransferase
2102	 50.26	0	1779264..1781006	+	580	18313745	-	PAE2991	-	hypothetical protein
2103	 59.07	+1	1780978..1781451	-	157	18313746	-	PAE2992	-	hypothetical protein
2104	 50.91	0	1781522..1783330	+	602	18313747	-	PAE2993	-	DNA topoisomerase (topA)
2105	 52.63	0	1783323..1784234	+	303	18313748	-	PAE2994	-	hypothetical protein
2106	 48.91	0	1784241..1784561	+	106	18313749	-	PAE2996	-	hypothetical protein
2107	 51.47	0	1784601..1786166	+	521	18313750	-	PAE2998	-	hypothetical protein
2108	 52.36	0	1786176..1787510	-	444	18313751	-	PAE3000	-	elongation factor 1-alpha
2109	 54.62	0	1787626..1788231	-	201	18313752	-	PAE3001	-	isochorismatase, putative
2110	 54.67	0	1788559..1788708	+	49	18313753	-	PAE3002	-	paREP2a
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.