IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1912	 51.48	0	1627423..1627692	+	89	18313555	-	PAE2741	-	paREP5b
1913	 45.65	-1	1627811..1628143	+	110	18313556	-	PAE2742	-	hypothetical protein
1914	 53.65	0	1628145..1629473	+	442	18313557	fumC	PAE2743	-	fumarate hydratase
1915	 48.89	0	1629885..1630874	-	329	18313558	-	PAE2744	-	thioredoxin reductase (trxB)
1916	 45.56	-1	1631049..1631228	-	59	18313559	-	PAE2746	-	ribosomal protein L24, conjectural
1917	 47.57	0	1631265..1631861	-	198	18313560	-	PAE2747	-	hypothetical protein
1918	 44.86	-1	1631965..1632441	+	158	18313561	-	PAE2748	-	hypothetical protein
1919	 44.31	-1	1632711..1633220	+	169	18313562	-	PAE2750	-	hypothetical protein
1920	 41.33	-2	1633202..1634227	+	341	18313563	-	PAE2751	-	cytochrome C-type biogenesis protein (ccdA), conjectural
1921	 54.74	0	1634659..1634985	+	108	18313564	-	PAE2753	-	hypothetical protein
1922	 58.46	+1	1635106..1635507	-	133	18313565	-	PAE2754	-	hypothetical protein
1923	 59.56	+1	1635497..1635721	-	74	18313566	-	PAE2755	-	hypothetical protein
1924	 52.15	0	1635846..1636031	+	61	18313567	-	PAE2756	-	hypothetical protein
1925	 56.67	+1	1636096..1638465	+	789	18313568	-	PAE2758	-	cation-transporting ATPase (P-type)
1926	 44.90	-1	1638507..1638869	+	120	18313569	-	PAE2759	-	hypothetical protein
1927	 50.41	0	1638885..1639247	+	120	18313570	-	PAE2760	-	paREP11
1928	 59.76	+1	1639309..1639815	-	168	18313571	-	PAE2762	-	hypothetical protein
1929	 52.94	0	1640019..1640171	+	50	18313572	-	PAE2766	-	hypothetical protein
1930	 51.77	0	1640226..1641494	-	422	18313573	-	PAE2767	-	transport protein, putative
1931	 51.78	0	1641660..1642727	-	355	18313574	-	PAE2769	-	hypothetical protein
1932	 47.25	0	1643440..1643712	+	90	18313575	-	PAE2770	-	paREP12, degenerate
1933	 47.50	0	1644153..1644632	-	159	18313576	-	PAE2773	-	hypothetical protein
1934	 57.47	+1	1644770..1645606	+	278	18313577	-	PAE2775	-	hypothetical protein
1935	 57.01	+1	1645709..1646029	+	106	18313578	-	PAE2777	-	hypothetical protein
1936	 55.98	0	1646026..1646895	+	289	18313579	-	PAE2778	-	type II secretion system protein, conjectural
1937	 55.60	0	1646892..1647677	+	261	18313580	-	PAE2779	-	hypothetical protein
1938	 42.71	-1	1647743..1648030	+	95	18313581	-	PAE2780	-	hypothetical protein
1939	 48.93	0	1648097..1648564	-	155	18313582	-	PAE2782	-	hypothetical protein
1940	 55.16	0	1648620..1649045	+	141	18313583	-	PAE2783	-	hypothetical protein
1941	 60.75	+1	1649015..1649386	+	123	18313584	-	PAE2784	-	hypothetical protein
1942	 53.30	0	1649370..1650035	-	221	18313585	-	PAE2785	-	ABC transporter ATP-binding protein, putative
1943	 44.39	-1	1650118..1650768	+	216	18313586	-	PAE2786	-	paREP5ab, internal deletion and authentic frameshift
1944	 52.47	0	1650864..1651511	-	215	18313587	-	PAE2788	-	hypothetical protein
1945	 49.89	0	1651508..1651978	-	156	18313588	-	PAE2789	-	hypothetical protein
1946	 53.58	0	1651980..1652468	-	162	18313589	-	PAE2791	-	hypothetical protein
1947	 53.40	0	1652504..1653106	+	200	18313590	-	PAE2792	-	hypothetical protein
1948	 55.06	0	1653082..1653417	+	111	18313591	-	PAE2794a	-	hypothetical protein
1949	 53.61	0	1653368..1655014	-	548	18313592	-	PAE2794	-	protease IV, conjectural
1950	 54.64	0	1654995..1655942	+	315	18313593	-	PAE2795	-	serine protease
1951	 55.86	0	1655939..1656271	-	110	18313594	-	PAE2796	-	hypothetical protein
1952	 55.30	0	1656268..1656531	-	87	18313595	-	PAE2797	-	hypothetical protein
1953	 57.80	+1	1656594..1657619	+	341	18313596	-	PAE2798	-	M20/M25/M40 family peptidase
1954	 51.57	0	1657655..1658866	+	403	18313597	-	PAE2799	-	hypothetical protein
1955	 48.42	0	1658863..1659147	+	94	18313598	-	PAE2800	-	hypothetical protein
1956	 54.39	0	1659168..1659566	+	132	18313599	-	PAE2801	-	hypothetical protein
1957	 45.33	-1	1659753..1659827	+	24	18313600	-	PAE2804a	-	paREP8, degenerate
1958	 59.06	+1	1660082..1660699	+	205	18313601	-	PAE2806	-	hypothetical protein
1959	 57.91	+1	1660704..1661240	+	178	18313602	-	PAE2808	-	hypothetical protein
1960	 51.11	0	1661268..1661402	-	44	18313603	-	PAE2809	-	hypothetical protein
1961	 43.91	-1	1661667..1662980	-	437	18313604	-	PAE2811	-	hypothetical protein
1962	 50.65	0	1663162..1663623	-	153	18313605	-	PAE2812	-	paREP8
1963	 45.02	-1	1664059..1664460	+	133	18313606	-	PAE2813	-	hypothetical protein
1964	 54.03	0	1664925..1665470	+	181	18313607	-	PAE2814	-	paREP1
1965	 55.79	0	1666365..1667375	+	336	18313608	-	PAE2819	-	pyridoxine biosynthesis protein
1966	 55.61	0	1667372..1667986	+	204	18313609	-	PAE2820	-	glutamine amidotransferase subunit PdxT
1967	 49.59	0	1667983..1668474	-	163	18313610	-	PAE2821	-	paREP1
1968	 49.60	0	1668506..1669132	-	208	18313611	-	PAE2822	-	hypothetical protein
1969	 50.00	0	1669151..1669354	-	67	18313612	-	PAE2823	-	hypothetical protein
1970	 51.82	0	1669444..1669773	-	109	18313613	-	PAE2824	-	hypothetical protein
1971	 48.36	0	1669822..1670034	+	70	18313614	-	PAE2825	-	hypothetical protein
1972	 54.99	0	1670018..1671130	-	370	18313615	-	PAE2826	-	polyferredoxin
1973	 50.28	0	1671157..1672791	-	544	18313616	-	PAE2827	-	CoA transferase, putative
1974	 46.67	0	1672925..1673149	+	74	18313617	-	PAE2828	-	hypothetical protein
1975	 44.93	-1	1673133..1673546	+	137	18313618	-	PAE2829	-	hypothetical protein
1976	 53.95	0	1673553..1674008	-	151	18313619	-	PAE2830	-	paREP8
1977	 50.68	0	1674320..1675057	-	245	18313620	fabG	PAE2832	-	3-ketoacyl-(acyl-carrier-protein) reductase
1978	 51.62	0	1675069..1675500	-	143	18313621	-	PAE2833	-	hypothetical protein
1979	 52.02	0	1675497..1676657	-	386	18313622	-	PAE2834	-	hypothetical protein
1980	 56.12	0	1676729..1677553	-	274	18313623	-	PAE2836	-	molybdopterin oxidoreductase, membrane subunit
1981	 49.07	0	1677556..1678254	-	232	18313624	-	PAE2837	-	molybdopterin oxidoreductase, iron-sulfur binding subunit
1982	 54.05	0	1678251..1679360	-	369	18313625	-	PAE2839	-	molybdopterin oxidoreductase, molybdopterin binding subunit part 2, authentic frameshift
1983	 52.11	0	1679360..1681447	-	695	18313626	-	PAE2840	-	molybdopterin oxidoreductase, molybdopterin binding subunit part 1, authentic frameshift
1984	 44.98	-1	1681542..1681979	-	145	18313627	-	PAE2842	-	hypothetical protein
1985	 44.95	-1	1682014..1682607	-	197	18313628	-	PAE2843	-	hypothetical protein
1986	 44.19	-1	1682588..1682845	-	85	18313629	-	PAE2844	-	hypothetical protein
1987	 47.74	0	1683120..1683695	+	191	18313630	-	PAE2846	-	paREP5ab, internal deletion and authentic frameshift
1988	 58.60	+1	1683715..1683900	-	61	18313631	-	PAE2848	-	hypothetical protein
1989	 49.57	0	1683915..1684031	-	38	18313632	-	PAE2847	-	hypothetical protein
1990	 44.59	-1	1684077..1684298	-	73	18313633	-	PAE2849	-	paREP6
1991	 51.41	0	1684277..1684807	-	176	18313634	-	PAE2851	-	hypothetical protein
1992	 54.30	0	1684788..1685369	-	193	18313635	-	PAE2853	-	paREP6
1993	 51.89	0	1685597..1686577	+	326	18313636	-	PAE2855	-	hypothetical protein
1994	 55.07	0	1686584..1686928	-	114	18313637	-	PAE2856	-	hypothetical protein
1995	 47.49	0	1686977..1687315	-	112	18313638	-	PAE2857	-	hypothetical protein
1996	 49.59	0	1687408..1687530	-	40	18313639	-	PAE2858	-	hypothetical protein
1997	 48.76	0	1687942..1690392	+	816	18313640	-	PAE2859	-	molybdopterin oxidoreductase, molybdopterin binding subunit
1998	 51.50	0	1690389..1690955	+	188	18313641	-	PAE2860	-	molybdopterin oxidoreductase, iron-sulfur binding subunit
1999	 49.37	0	1690952..1691824	+	290	18313642	-	PAE2861	-	molybdopterin oxidoreductase, membrane subunit
2000	 47.17	0	1691944..1692420	+	158	18313643	-	PAE2862	-	paREP1
2001	 50.00	0	1692490..1692879	-	129	18313644	-	PAE2864	-	hypothetical protein
2002	 50.31	0	1693117..1695072	-	651	18313645	-	PAE2865	-	acetyl-coenzyme A synthetase
2003	 42.79	-1	1695105..1695548	-	147	18313646	-	PAE2866a	-	hypothetical protein
2004	 47.25	0	1695487..1697175	-	562	18313647	-	PAE2866	-	sugar transporter, putative
2005	 54.55	0	1697172..1699184	-	670	18313648	-	PAE2867	-	acetyl-CoA synthetase
2006	 53.88	0	1699419..1700333	-	304	18313649	-	PAE2868	-	homoserine dehydrogenase
2007	 52.03	0	1700382..1700873	+	163	18313650	-	PAE2869	-	paREP1
2008	 48.67	0	1700963..1701262	-	99	18313651	-	PAE2870	-	paREP11
2009	 46.93	0	1701309..1701536	-	75	18313652	-	PAE2872	-	hypothetical protein
2010	 48.94	0	1701848..1702129	+	93	18313653	-	PAE2874	-	hypothetical protein
2011	 55.12	0	1702190..1702492	+	100	18313654	-	PAE2875	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.