IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1852	 46.35	-1	1578568..1579128	+	186	18313495	-	PAE2655	-	hypothetical protein
1853	 54.25	0	1579149..1580018	+	289	18313496	-	PAE2656	-	pirin-like protein
1854	 53.76	0	1580015..1580812	+	265	18313497	-	PAE2658	-	hypothetical protein
1855	 46.35	-1	1580933..1581493	-	186	18313498	-	PAE2659	-	formate dehydrogenase protein fdhE
1856	 47.09	0	1581480..1582184	-	234	18313499	-	PAE2660	-	hypothetical protein
1857	 52.96	0	1582221..1583066	-	281	18313500	-	PAE2661	-	formate dehydrogenase beta subunit
1858	 50.77	0	1583072..1586575	-	1167	18313501	-	PAE2662	-	formate dehydrogenase alpha subunit
1859	 49.36	0	1586785..1587489	-	234	18313502	-	PAE2664	-	formate dehydrogenase delta subunit
1860	 48.23	0	1587468..1588004	-	178	18313503	-	PAE2665	-	hypothetical protein
1861	 53.29	0	1588143..1588583	+	146	18313504	-	PAE2668	-	hypothetical protein
1862	 58.97	+1	1588612..1589391	+	259	18313505	-	PAE2669	-	hypothetical protein
1863	 46.78	0	1589410..1589766	-	118	18313506	-	PAE2671	-	paREP8
1864	 57.83	+1	1589896..1590585	+	229	18313507	-	PAE2672	-	hypothetical protein
1865	 51.30	0	1590606..1591067	+	153	18313508	-	PAE2673	-	paREP8
1866	 53.44	0	1591505..1591882	-	125	18313509	-	PAE2676	-	hypothetical protein
1867	 57.26	+1	1591879..1592229	-	116	18313510	-	PAE2678	-	hypothetical protein
1868	 55.43	0	1592309..1592833	-	174	18313511	-	PAE2679	-	transcriptional regulator, conjectural
1869	 49.36	0	1592818..1593360	-	180	18313512	-	PAE2680	-	hypothetical protein
1870	 56.67	+1	1593573..1593902	-	109	18313513	-	PAE2682	-	hypothetical protein
1871	 50.53	0	1594344..1594628	-	94	18313514	-	PAE2684	-	transcriptional regulator, conjectural
1872	 58.44	+1	1594684..1595376	-	230	18313515	-	PAE2685	-	hypothetical protein
1873	 60.63	+1	1595400..1595780	-	126	18313516	-	PAE2686	-	hypothetical protein
1874	 62.15	+2	1595777..1596772	-	331	18313517	-	PAE2687	-	alcohol dehydrogenase (Zinc)
1875	 56.24	0	1596769..1597689	-	306	18313518	-	PAE2688	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, conjectural
1876	 53.32	0	1597757..1598872	-	371	18313519	-	PAE2689	-	hypothetical protein
1877	 52.04	0	1598973..1599437	+	154	18313520	-	PAE2690	-	iron-sulfur protein, putative
1878	 51.03	0	1599412..1599846	-	144	18313521	-	PAE2691	-	hypothetical protein
1879	 54.62	0	1599843..1601345	-	500	18313522	-	PAE2693	-	4-hydroxyphenylacetate-3-hydroxylase, conjectural
1880	 44.15	-1	1601630..1602082	-	150	18313523	-	PAE2695	-	hypothetical protein
1881	 50.72	0	1602414..1603310	+	298	18313524	-	PAE2696	-	pseudocatalase
1882	 40.30	-2	1603314..1604045	-	243	18313525	-	PAE2697	-	transport protein, putative
1883	 49.68	0	1604039..1604662	-	207	18313526	-	PAE2699	-	iron (III) ABC transporter ATP-binding protein, putative
1884	 49.34	0	1604799..1605785	+	328	18313527	-	PAE2700	-	hypothetical protein
1885	 46.95	0	1605821..1606312	+	163	18313528	-	PAE2701	-	hypothetical protein
1886	 51.85	0	1606370..1606801	+	143	18313529	-	PAE2702	-	hypothetical protein
1887	 54.10	0	1606961..1608058	+	365	18313530	-	PAE2703	-	hypothetical protein
1888	 53.51	0	1608051..1608278	-	75	18313531	-	PAE2705	-	hypothetical protein
1889	 54.88	0	1608233..1608529	-	98	18313532	-	PAE2706	-	ferredoxin oxidoreductase, conjectural
1890	 47.42	0	1608595..1608885	-	96	18313533	-	PAE2707	-	hypothetical protein
1891	 50.94	0	1608885..1609151	-	88	18313534	-	PAE2708	-	hypothetical protein
1892	 45.78	-1	1609118..1609342	-	74	18313535	-	PAE2711a	-	hypothetical protein
1893	 50.22	0	1609397..1609858	-	153	18313536	-	PAE2712	-	hypothetical protein
1894	 46.18	-1	1609852..1610178	+	108	18313537	-	PAE2713	-	4a-hydroxytetrahydrobiopterin dehydratase
1895	 51.14	0	1610178..1611008	+	276	18313538	-	PAE2715	-	cation efflux system protein
1896	 52.93	0	1611076..1611621	+	181	18313539	-	PAE2716	-	paREP1
1897	 59.13	+1	1611632..1613635	-	667	18313540	-	PAE2717	-	hypothetical protein
1898	 51.74	0	1613797..1614285	+	162	18313541	-	PAE2718	-	paREP1
1899	 50.62	0	1614998..1615483	-	161	18313542	-	PAE2723	-	hypothetical protein
1900	 42.95	-1	1615483..1617084	-	533	18313543	-	PAE2724	-	hypothetical protein
1901	 58.95	+1	1617678..1618208	-	176	18313544	-	PAE2726	-	hypothetical protein
1902	 53.57	0	1618627..1619313	+	228	18313545	-	PAE2728	-	hypothetical protein
1903	 53.39	0	1619652..1621037	+	461	18313546	-	PAE2730	-	selenium binding protein,
1904	 51.77	0	1621041..1621577	+	178	18313547	-	PAE2731	-	hypothetical protein
1905	 49.69	0	1621616..1622104	-	162	18313548	-	PAE2732	-	bacterioferritin comigratory protein
1906	 52.72	0	1622312..1623157	+	281	18313549	-	PAE2733	-	thiosulfate sulfurtransferase
1907	 56.13	0	1623185..1623535	-	116	18313550	-	PAE2734	-	Rieske iron sulfur protein, putative
1908	 57.65	+1	1623594..1623848	+	84	18313551	-	PAE2735	-	hypothetical protein
1909	 56.54	+1	1623848..1625713	+	621	18313552	-	PAE2736	-	2-oxoacid ferredoxin oxidoreductase alpha subunit
1910	 52.31	0	1625703..1626656	+	317	18313553	-	PAE2737	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1911	 49.35	0	1626952..1627413	+	153	18313554	-	PAE2740	-	paREP5a
1912	 51.48	0	1627423..1627692	+	89	18313555	-	PAE2741	-	paREP5b
1913	 45.65	-1	1627811..1628143	+	110	18313556	-	PAE2742	-	hypothetical protein
1914	 53.65	0	1628145..1629473	+	442	18313557	fumC	PAE2743	-	fumarate hydratase
1915	 48.89	0	1629885..1630874	-	329	18313558	-	PAE2744	-	thioredoxin reductase (trxB)
1916	 45.56	-1	1631049..1631228	-	59	18313559	-	PAE2746	-	ribosomal protein L24, conjectural
1917	 47.57	0	1631265..1631861	-	198	18313560	-	PAE2747	-	hypothetical protein
1918	 44.86	-1	1631965..1632441	+	158	18313561	-	PAE2748	-	hypothetical protein
1919	 44.31	-1	1632711..1633220	+	169	18313562	-	PAE2750	-	hypothetical protein
1920	 41.33	-2	1633202..1634227	+	341	18313563	-	PAE2751	-	cytochrome C-type biogenesis protein (ccdA), conjectural
1921	 54.74	0	1634659..1634985	+	108	18313564	-	PAE2753	-	hypothetical protein
1922	 58.46	+1	1635106..1635507	-	133	18313565	-	PAE2754	-	hypothetical protein
1923	 59.56	+1	1635497..1635721	-	74	18313566	-	PAE2755	-	hypothetical protein
1924	 52.15	0	1635846..1636031	+	61	18313567	-	PAE2756	-	hypothetical protein
1925	 56.67	+1	1636096..1638465	+	789	18313568	-	PAE2758	-	cation-transporting ATPase (P-type)
1926	 44.90	-1	1638507..1638869	+	120	18313569	-	PAE2759	-	hypothetical protein
1927	 50.41	0	1638885..1639247	+	120	18313570	-	PAE2760	-	paREP11
1928	 59.76	+1	1639309..1639815	-	168	18313571	-	PAE2762	-	hypothetical protein
1929	 52.94	0	1640019..1640171	+	50	18313572	-	PAE2766	-	hypothetical protein
1930	 51.77	0	1640226..1641494	-	422	18313573	-	PAE2767	-	transport protein, putative
1931	 51.78	0	1641660..1642727	-	355	18313574	-	PAE2769	-	hypothetical protein
1932	 47.25	0	1643440..1643712	+	90	18313575	-	PAE2770	-	paREP12, degenerate
1933	 47.50	0	1644153..1644632	-	159	18313576	-	PAE2773	-	hypothetical protein
1934	 57.47	+1	1644770..1645606	+	278	18313577	-	PAE2775	-	hypothetical protein
1935	 57.01	+1	1645709..1646029	+	106	18313578	-	PAE2777	-	hypothetical protein
1936	 55.98	0	1646026..1646895	+	289	18313579	-	PAE2778	-	type II secretion system protein, conjectural
1937	 55.60	0	1646892..1647677	+	261	18313580	-	PAE2779	-	hypothetical protein
1938	 42.71	-1	1647743..1648030	+	95	18313581	-	PAE2780	-	hypothetical protein
1939	 48.93	0	1648097..1648564	-	155	18313582	-	PAE2782	-	hypothetical protein
1940	 55.16	0	1648620..1649045	+	141	18313583	-	PAE2783	-	hypothetical protein
1941	 60.75	+1	1649015..1649386	+	123	18313584	-	PAE2784	-	hypothetical protein
1942	 53.30	0	1649370..1650035	-	221	18313585	-	PAE2785	-	ABC transporter ATP-binding protein, putative
1943	 44.39	-1	1650118..1650768	+	216	18313586	-	PAE2786	-	paREP5ab, internal deletion and authentic frameshift
1944	 52.47	0	1650864..1651511	-	215	18313587	-	PAE2788	-	hypothetical protein
1945	 49.89	0	1651508..1651978	-	156	18313588	-	PAE2789	-	hypothetical protein
1946	 53.58	0	1651980..1652468	-	162	18313589	-	PAE2791	-	hypothetical protein
1947	 53.40	0	1652504..1653106	+	200	18313590	-	PAE2792	-	hypothetical protein
1948	 55.06	0	1653082..1653417	+	111	18313591	-	PAE2794a	-	hypothetical protein
1949	 53.61	0	1653368..1655014	-	548	18313592	-	PAE2794	-	protease IV, conjectural
1950	 54.64	0	1654995..1655942	+	315	18313593	-	PAE2795	-	serine protease
1951	 55.86	0	1655939..1656271	-	110	18313594	-	PAE2796	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.