IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1815	 46.09	-1	1548376..1548861	+	161	18313458	-	PAE2598	-	hypothetical protein
1816	 49.43	0	1549001..1549696	+	231	18313459	-	PAE2599	-	hypothetical protein
1817	 50.59	0	1549674..1550096	-	140	18313460	-	PAE2600	-	hypothetical protein
1818	 50.88	0	1550093..1550320	-	75	18313461	-	PAE2601	-	hypothetical protein
1819	 53.57	0	1550445..1550696	+	83	18313462	-	PAE2602	-	hypothetical protein
1820	 56.30	0	1550693..1552399	+	568	18313463	-	PAE2603	-	hypothetical protein
1821	 49.59	0	1552396..1552764	+	122	18313464	-	PAE2604	-	hypothetical protein
1822	 54.34	0	1552837..1553193	-	118	18313465	-	PAE2605	-	hypothetical protein
1823	 55.05	0	1553244..1553708	+	154	18313466	-	PAE2606	-	hypothetical protein
1824	 54.31	0	1553761..1555128	+	455	18313467	sat	PAE2609	-	sulfate adenylyltransferase
1825	 49.57	0	1555125..1555469	+	114	18313468	-	PAE2610	-	hypothetical protein
1826	 53.49	0	1555800..1556558	+	252	18313469	-	PAE2614	-	nitrate reductase gamma subunit (narI)
1827	 75.23	+2	1556894..1557115	+	73	18313470	-	PAE2615	-	paREP13
1828	 50.35	0	1557134..1558144	+	336	18313471	-	PAE2616	-	iron-sulfur binding reductase, degenerate
1829	 51.62	0	1558429..1559571	+	380	18313472	-	PAE2618	-	flavoprotein reductase, conjectural
1830	 48.90	0	1559568..1560023	+	151	18313473	-	PAE2619	-	hypothetical protein
1831	 53.61	0	1560036..1560548	-	170	18313474	-	PAE2620	-	hypothetical protein
1832	 56.91	+1	1560631..1562034	+	467	18313475	-	PAE2623	-	mercuric reductase
1833	 54.13	0	1562190..1562516	+	108	18313476	-	PAE2626	-	hypothetical protein
1834	 51.22	0	1562501..1563691	-	396	18313477	-	PAE2628	-	flavoprotein reductase, conjectural
1835	 50.00	0	1563688..1564443	-	251	18313478	-	PAE2630	-	hypothetical protein
1836	 45.50	-1	1564440..1565738	-	432	18313479	-	PAE2631	-	hypothetical protein
1837	 45.45	-1	1565740..1566762	-	340	18313480	-	PAE2632	-	hypothetical protein
1838	 43.90	-1	1566857..1567102	+	81	18313481	-	PAE2633	-	hypothetical protein
1839	 51.20	0	1567110..1567484	+	124	18313482	-	PAE2634	-	hypothetical protein
1840	 50.80	0	1567486..1568733	+	415	18313483	-	PAE2635	-	putative inner membrane protein
1841	 49.79	0	1568726..1569904	+	392	18313484	-	PAE2637	-	hypothetical protein
1842	 48.80	0	1569880..1570506	+	208	18313485	-	PAE2638	-	senC-like protein
1843	 50.35	0	1570611..1571180	+	189	18313486	-	PAE2640	-	hypothetical protein
1844	 54.90	0	1571185..1571745	-	186	18313487	-	PAE2641	-	hypothetical protein
1845	 52.58	0	1571841..1572713	+	290	18313488	-	PAE2643	-	lipoyl synthase
1846	 53.89	0	1572744..1573862	+	372	18313489	-	PAE2644	-	pyruvate dehydrogenase E1 alpha subunit
1847	 56.28	0	1573862..1574824	+	320	18313490	-	PAE2646	-	pyruvate dehydrogenase E1 beta subunit
1848	 55.12	0	1574824..1575975	+	383	18313491	-	PAE2648	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1849	 60.78	+1	1575972..1577330	+	452	18313492	-	PAE2649	-	pyruvate dehydrogenase E3 (dihydrolipoamide dehydrogenase)
1850	 53.48	0	1577327..1578001	+	224	18313493	-	PAE2651	-	lipoate protein ligase B
1851	 47.97	0	1578062..1578307	+	81	18313494	-	PAE2653	-	hypothetical protein
1852	 46.35	-1	1578568..1579128	+	186	18313495	-	PAE2655	-	hypothetical protein
1853	 54.25	0	1579149..1580018	+	289	18313496	-	PAE2656	-	pirin-like protein
1854	 53.76	0	1580015..1580812	+	265	18313497	-	PAE2658	-	hypothetical protein
1855	 46.35	-1	1580933..1581493	-	186	18313498	-	PAE2659	-	formate dehydrogenase protein fdhE
1856	 47.09	0	1581480..1582184	-	234	18313499	-	PAE2660	-	hypothetical protein
1857	 52.96	0	1582221..1583066	-	281	18313500	-	PAE2661	-	formate dehydrogenase beta subunit
1858	 50.77	0	1583072..1586575	-	1167	18313501	-	PAE2662	-	formate dehydrogenase alpha subunit
1859	 49.36	0	1586785..1587489	-	234	18313502	-	PAE2664	-	formate dehydrogenase delta subunit
1860	 48.23	0	1587468..1588004	-	178	18313503	-	PAE2665	-	hypothetical protein
1861	 53.29	0	1588143..1588583	+	146	18313504	-	PAE2668	-	hypothetical protein
1862	 58.97	+1	1588612..1589391	+	259	18313505	-	PAE2669	-	hypothetical protein
1863	 46.78	0	1589410..1589766	-	118	18313506	-	PAE2671	-	paREP8
1864	 57.83	+1	1589896..1590585	+	229	18313507	-	PAE2672	-	hypothetical protein
1865	 51.30	0	1590606..1591067	+	153	18313508	-	PAE2673	-	paREP8
1866	 53.44	0	1591505..1591882	-	125	18313509	-	PAE2676	-	hypothetical protein
1867	 57.26	+1	1591879..1592229	-	116	18313510	-	PAE2678	-	hypothetical protein
1868	 55.43	0	1592309..1592833	-	174	18313511	-	PAE2679	-	transcriptional regulator, conjectural
1869	 49.36	0	1592818..1593360	-	180	18313512	-	PAE2680	-	hypothetical protein
1870	 56.67	+1	1593573..1593902	-	109	18313513	-	PAE2682	-	hypothetical protein
1871	 50.53	0	1594344..1594628	-	94	18313514	-	PAE2684	-	transcriptional regulator, conjectural
1872	 58.44	+1	1594684..1595376	-	230	18313515	-	PAE2685	-	hypothetical protein
1873	 60.63	+1	1595400..1595780	-	126	18313516	-	PAE2686	-	hypothetical protein
1874	 62.15	+2	1595777..1596772	-	331	18313517	-	PAE2687	-	alcohol dehydrogenase (Zinc)
1875	 56.24	0	1596769..1597689	-	306	18313518	-	PAE2688	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, conjectural
1876	 53.32	0	1597757..1598872	-	371	18313519	-	PAE2689	-	hypothetical protein
1877	 52.04	0	1598973..1599437	+	154	18313520	-	PAE2690	-	iron-sulfur protein, putative
1878	 51.03	0	1599412..1599846	-	144	18313521	-	PAE2691	-	hypothetical protein
1879	 54.62	0	1599843..1601345	-	500	18313522	-	PAE2693	-	4-hydroxyphenylacetate-3-hydroxylase, conjectural
1880	 44.15	-1	1601630..1602082	-	150	18313523	-	PAE2695	-	hypothetical protein
1881	 50.72	0	1602414..1603310	+	298	18313524	-	PAE2696	-	pseudocatalase
1882	 40.30	-2	1603314..1604045	-	243	18313525	-	PAE2697	-	transport protein, putative
1883	 49.68	0	1604039..1604662	-	207	18313526	-	PAE2699	-	iron (III) ABC transporter ATP-binding protein, putative
1884	 49.34	0	1604799..1605785	+	328	18313527	-	PAE2700	-	hypothetical protein
1885	 46.95	0	1605821..1606312	+	163	18313528	-	PAE2701	-	hypothetical protein
1886	 51.85	0	1606370..1606801	+	143	18313529	-	PAE2702	-	hypothetical protein
1887	 54.10	0	1606961..1608058	+	365	18313530	-	PAE2703	-	hypothetical protein
1888	 53.51	0	1608051..1608278	-	75	18313531	-	PAE2705	-	hypothetical protein
1889	 54.88	0	1608233..1608529	-	98	18313532	-	PAE2706	-	ferredoxin oxidoreductase, conjectural
1890	 47.42	0	1608595..1608885	-	96	18313533	-	PAE2707	-	hypothetical protein
1891	 50.94	0	1608885..1609151	-	88	18313534	-	PAE2708	-	hypothetical protein
1892	 45.78	-1	1609118..1609342	-	74	18313535	-	PAE2711a	-	hypothetical protein
1893	 50.22	0	1609397..1609858	-	153	18313536	-	PAE2712	-	hypothetical protein
1894	 46.18	-1	1609852..1610178	+	108	18313537	-	PAE2713	-	4a-hydroxytetrahydrobiopterin dehydratase
1895	 51.14	0	1610178..1611008	+	276	18313538	-	PAE2715	-	cation efflux system protein
1896	 52.93	0	1611076..1611621	+	181	18313539	-	PAE2716	-	paREP1
1897	 59.13	+1	1611632..1613635	-	667	18313540	-	PAE2717	-	hypothetical protein
1898	 51.74	0	1613797..1614285	+	162	18313541	-	PAE2718	-	paREP1
1899	 50.62	0	1614998..1615483	-	161	18313542	-	PAE2723	-	hypothetical protein
1900	 42.95	-1	1615483..1617084	-	533	18313543	-	PAE2724	-	hypothetical protein
1901	 58.95	+1	1617678..1618208	-	176	18313544	-	PAE2726	-	hypothetical protein
1902	 53.57	0	1618627..1619313	+	228	18313545	-	PAE2728	-	hypothetical protein
1903	 53.39	0	1619652..1621037	+	461	18313546	-	PAE2730	-	selenium binding protein,
1904	 51.77	0	1621041..1621577	+	178	18313547	-	PAE2731	-	hypothetical protein
1905	 49.69	0	1621616..1622104	-	162	18313548	-	PAE2732	-	bacterioferritin comigratory protein
1906	 52.72	0	1622312..1623157	+	281	18313549	-	PAE2733	-	thiosulfate sulfurtransferase
1907	 56.13	0	1623185..1623535	-	116	18313550	-	PAE2734	-	Rieske iron sulfur protein, putative
1908	 57.65	+1	1623594..1623848	+	84	18313551	-	PAE2735	-	hypothetical protein
1909	 56.54	+1	1623848..1625713	+	621	18313552	-	PAE2736	-	2-oxoacid ferredoxin oxidoreductase alpha subunit
1910	 52.31	0	1625703..1626656	+	317	18313553	-	PAE2737	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1911	 49.35	0	1626952..1627413	+	153	18313554	-	PAE2740	-	paREP5a
1912	 51.48	0	1627423..1627692	+	89	18313555	-	PAE2741	-	paREP5b
1913	 45.65	-1	1627811..1628143	+	110	18313556	-	PAE2742	-	hypothetical protein
1914	 53.65	0	1628145..1629473	+	442	18313557	fumC	PAE2743	-	fumarate hydratase
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.