IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1742	 52.67	0	1490561..1491703	+	380	18313385	-	PAE2491	-	acyl-CoA dehydrogenase
1743	 59.51	+1	1492090..1492620	+	176	18313386	-	PAE2493	-	paREP7
1744	 50.63	0	1493028..1493825	-	265	18313387	-	PAE2496	-	hypothetical protein
1745	 47.15	0	1494605..1495516	+	303	18313388	-	PAE2498	-	hypothetical protein
1746	 51.20	0	1495559..1496185	+	208	18313389	-	PAE2499	-	phosphoribosyl anthranilate isomerase
1747	 72.22	+2	1496567..1496764	+	65	18313390	-	PAE2500	-	paREP13
1748	 63.07	+2	1496570..1497208	-	212	18313391	-	PAE2503	-	hypothetical protein
1749	 50.85	0	1497354..1497530	-	58	18313392	-	PAE2504	-	hypothetical protein
1750	 53.89	0	1497587..1497907	-	106	18313393	-	PAE2505	-	hypothetical protein
1751	 56.18	0	1497957..1498709	+	250	18313394	-	PAE2506	-	paREP11
1752	 58.18	+1	1498697..1499509	-	270	18313395	-	PAE2508	-	hypothetical protein
1753	 52.58	0	1499696..1499908	+	70	18313396	-	PAE2509	-	paREP7
1754	 52.94	0	1500280..1500789	-	169	18313397	-	PAE2511	-	hypothetical protein
1755	 48.03	0	1500897..1501352	+	151	18313398	-	PAE2513	-	hypothetical protein
1756	 54.76	0	1501418..1502005	+	195	18313399	-	PAE2514	-	hypothetical protein
1757	 55.56	0	1502052..1503203	-	383	18313400	-	PAE2515	-	acetylornithine aminotransferase (argD)
1758	 48.02	0	1503233..1503409	+	58	18313401	-	PAE2516	-	hypothetical protein
1759	 50.22	0	1503459..1503689	+	76	18313402	-	PAE2518	-	hypothetical protein
1760	 60.09	+1	1503755..1505260	+	501	18313403	-	PAE2520	-	hypothetical protein
1761	 57.95	+1	1505278..1505736	-	152	18313404	-	PAE2521	-	paREP8
1762	 55.21	0	1505798..1505989	+	63	18313405	-	PAE2521a	-	hypothetical protein
1763	 52.39	0	1505996..1507144	-	382	18313406	-	PAE2522	-	paREP12
1764	 52.75	0	1507704..1508357	+	217	18313407	-	PAE2525	-	hypothetical protein
1765	 49.13	0	1508572..1509204	-	210	18313408	-	PAE2526	-	hypothetical protein
1766	 57.52	+1	1509401..1509892	+	163	18313409	-	PAE2529	-	hypothetical protein
1767	 55.69	0	1509879..1510388	+	169	18313410	-	PAE2531	-	hypothetical protein
1768	 56.10	0	1510385..1511482	+	365	18313411	-	PAE2532	-	ribose ABC transporter, ATP-binding protein, putative
1769	 56.23	0	1511454..1512047	+	197	18313412	-	PAE2534	-	hypothetical protein
1770	 56.67	+1	1512125..1513474	+	449	18313413	-	PAE2535	-	phosphomethylpyrimidine kinase
1771	 53.33	0	1513500..1514219	-	239	18313414	-	PAE2536	-	hypothetical protein
1772	 58.78	+1	1514264..1515112	+	282	18313415	-	PAE2539	-	hypothetical protein
1773	 50.14	0	1515109..1516191	-	360	18313416	-	PAE2540	-	hypothetical protein
1774	 52.88	0	1516462..1517208	+	248	18313417	-	PAE2541a	-	hypothetical protein
1775	 54.60	0	1517144..1518958	+	604	18313418	-	PAE2544	-	hypothetical protein
1776	 49.69	0	1519215..1519691	+	158	18313419	-	PAE2546	-	paREP11
1777	 56.25	0	1519724..1519867	-	47	18313420	-	PAE2547	-	hypothetical protein
1778	 55.92	0	1519912..1520274	+	120	18313421	-	PAE2548	-	hypothetical protein
1779	 51.75	0	1520294..1520863	-	189	18313422	-	PAE2549	-	hypothetical protein
1780	 47.11	0	1520935..1521297	+	120	18313423	-	PAE2550	-	hypothetical protein
1781	 51.15	0	1521287..1521679	+	130	18313424	-	PAE2551	-	hypothetical protein
1782	 47.89	0	1522164..1522898	+	244	18313425	-	PAE2552	-	hypothetical protein
1783	 45.24	-1	1522895..1523188	+	97	18313426	-	PAE2553	-	hypothetical protein
1784	 55.12	0	1523720..1525009	+	429	18313427	-	PAE2556	-	glutamine synthetase
1785	 51.77	0	1525307..1526353	+	348	18313428	-	PAE2557	-	asparagine synthetase A
1786	 58.47	+1	1526457..1527542	-	361	18313429	-	PAE2559	-	tetracycline resistance protein
1787	 49.94	0	1527584..1528414	-	276	18313430	-	PAE2560	-	hypothetical protein
1788	 50.93	0	1528544..1528759	+	71	18313431	-	PAE2561	-	adenylylsulfate reductase beta subunit part 1, authentic frameshift
1789	 54.21	0	1528762..1529034	+	90	18313432	-	PAE2562	-	adenylylsulfate reductase beta subunit part 2, authentic frameshift
1790	 56.01	0	1529036..1530424	+	462	18313433	-	PAE2563	-	adenylylsulfate reductase
1791	 52.15	0	1530431..1530919	+	162	18313434	-	PAE2564	-	adenylylsulfate reductase alpha subunit part 2, authentic frameshift
1792	 50.99	0	1531015..1531518	+	167	18313435	-	PAE2565	-	hypothetical protein
1793	 50.89	0	1531527..1531862	-	111	18313436	-	PAE2566	-	siroheme-sulfite reductase gamma subunit-like protein
1794	 47.58	0	1531993..1532343	+	116	18313437	-	PAE2568	-	hypothetical protein
1795	 49.44	0	1532344..1532610	-	88	18313438	-	PAE2569	-	glutathione-S-transferase-like protein
1796	 52.31	0	1532817..1533965	-	382	18313439	-	PAE2571	-	sulfite reductase beta subunit
1797	 54.25	0	1533962..1535209	-	415	18313440	-	PAE2572	-	sulfite reductase alpha subunit
1798	 50.61	0	1535352..1536011	-	219	18313441	-	PAE2573	-	uroporphyrin-III C-methyltransferase
1799	 36.08	-2	1536116..1536370	-	84	18313442	-	PAE2574	-	hypothetical protein
1800	 42.79	-1	1536367..1537170	-	267	18313443	-	PAE2575	-	phosphoadenosine phosphosulfate reductase
1801	 41.83	-1	1537172..1537783	-	203	18313444	-	PAE2576	-	hypothetical protein
1802	 43.43	-1	1537780..1539384	-	534	18313445	-	PAE2577	-	ferredoxin-nitrite reductase
1803	 42.45	-1	1539494..1540360	+	288	18313446	-	PAE2578	-	hypothetical protein
1804	 41.20	-2	1540457..1540723	+	88	18313447	-	PAE2580	-	hypothetical protein
1805	 41.95	-1	1540714..1541409	+	231	18313448	-	PAE2582	-	thiosulfate sulfurtransferase
1806	 53.97	0	1541596..1541847	+	83	18313449	-	PAE2584	-	paREP1
1807	 53.90	0	1542038..1543165	-	375	18313450	-	PAE2587	-	cobyrinic acid a,c-diamide synthase (cbiA) part 2, authentic frameshift
1808	 53.54	0	1543249..1543347	-	32	18313451	-	PAE2589	-	cobyrinic acid a,c-diamide synthase (cbiA) part 1, authentic frameshift
1809	 51.30	0	1543397..1543975	-	192	18313452	-	PAE2590	-	hypothetical protein
1810	 52.67	0	1544052..1544444	-	130	18313453	-	PAE2592	-	hypothetical protein
1811	 60.59	+1	1544486..1545193	+	235	18313454	-	PAE2593	-	uroporphyrinogen-III synthase (hemD), conjectural
1812	 57.66	+1	1545137..1545958	-	273	18313455	-	PAE2594	-	uroporphyrinogen-III synthase (hemD), conjectural
1813	 53.41	0	1546018..1547262	+	414	18313456	-	PAE2596	-	sulfite reductase alpha subunit
1814	 53.14	0	1547259..1548374	+	371	18313457	-	PAE2597	-	sulfite reductase beta subunit
1815	 46.09	-1	1548376..1548861	+	161	18313458	-	PAE2598	-	hypothetical protein
1816	 49.43	0	1549001..1549696	+	231	18313459	-	PAE2599	-	hypothetical protein
1817	 50.59	0	1549674..1550096	-	140	18313460	-	PAE2600	-	hypothetical protein
1818	 50.88	0	1550093..1550320	-	75	18313461	-	PAE2601	-	hypothetical protein
1819	 53.57	0	1550445..1550696	+	83	18313462	-	PAE2602	-	hypothetical protein
1820	 56.30	0	1550693..1552399	+	568	18313463	-	PAE2603	-	hypothetical protein
1821	 49.59	0	1552396..1552764	+	122	18313464	-	PAE2604	-	hypothetical protein
1822	 54.34	0	1552837..1553193	-	118	18313465	-	PAE2605	-	hypothetical protein
1823	 55.05	0	1553244..1553708	+	154	18313466	-	PAE2606	-	hypothetical protein
1824	 54.31	0	1553761..1555128	+	455	18313467	sat	PAE2609	-	sulfate adenylyltransferase
1825	 49.57	0	1555125..1555469	+	114	18313468	-	PAE2610	-	hypothetical protein
1826	 53.49	0	1555800..1556558	+	252	18313469	-	PAE2614	-	nitrate reductase gamma subunit (narI)
1827	 75.23	+2	1556894..1557115	+	73	18313470	-	PAE2615	-	paREP13
1828	 50.35	0	1557134..1558144	+	336	18313471	-	PAE2616	-	iron-sulfur binding reductase, degenerate
1829	 51.62	0	1558429..1559571	+	380	18313472	-	PAE2618	-	flavoprotein reductase, conjectural
1830	 48.90	0	1559568..1560023	+	151	18313473	-	PAE2619	-	hypothetical protein
1831	 53.61	0	1560036..1560548	-	170	18313474	-	PAE2620	-	hypothetical protein
1832	 56.91	+1	1560631..1562034	+	467	18313475	-	PAE2623	-	mercuric reductase
1833	 54.13	0	1562190..1562516	+	108	18313476	-	PAE2626	-	hypothetical protein
1834	 51.22	0	1562501..1563691	-	396	18313477	-	PAE2628	-	flavoprotein reductase, conjectural
1835	 50.00	0	1563688..1564443	-	251	18313478	-	PAE2630	-	hypothetical protein
1836	 45.50	-1	1564440..1565738	-	432	18313479	-	PAE2631	-	hypothetical protein
1837	 45.45	-1	1565740..1566762	-	340	18313480	-	PAE2632	-	hypothetical protein
1838	 43.90	-1	1566857..1567102	+	81	18313481	-	PAE2633	-	hypothetical protein
1839	 51.20	0	1567110..1567484	+	124	18313482	-	PAE2634	-	hypothetical protein
1840	 50.80	0	1567486..1568733	+	415	18313483	-	PAE2635	-	putative inner membrane protein
1841	 49.79	0	1568726..1569904	+	392	18313484	-	PAE2637	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.