IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1661	 50.97	0	1416923..1417336	+	137	18313304	-	PAE2384	-	universal stress protein
1662	 48.50	0	1417333..1418064	-	243	18313305	-	PAE2385	-	transport protein part 2, authentic frameshift
1663	 52.62	0	1417995..1418528	-	177	18313306	-	PAE2385a	-	transport protein part 1, authentic frameshift
1664	 51.00	0	1418606..1419256	+	216	18313307	-	PAE2387	-	hypothetical protein
1665	 50.14	0	1419224..1419955	-	243	18313308	-	PAE2388	-	hypothetical protein
1666	 51.98	0	1420061..1420237	+	58	18313309	-	PAE2389	-	preprotein translocase subunit SecG
1667	 52.10	0	1420414..1422006	+	530	18313310	-	PAE2391	-	dipeptide binding protein
1668	 53.49	0	1422003..1422791	-	262	18313311	-	PAE2392	-	dipeptide transport permease
1669	 50.39	0	1422791..1423804	-	337	18313312	-	PAE2393	-	dipeptide transport permease
1670	 53.13	0	1424332..1425018	+	228	18313313	-	PAE2394	-	hypothetical protein
1671	 49.41	0	1425023..1425619	+	198	18313314	-	PAE2396	-	hypothetical protein
1672	 38.67	-2	1425612..1425911	+	99	18313315	-	PAE2397	-	hypothetical protein
1673	 49.50	0	1425908..1426612	+	234	18313316	-	PAE2398	-	hypothetical protein
1674	 57.08	+1	1426609..1428141	+	510	18313317	-	PAE2399	-	type II secretion system protein, conjectural
1675	 53.21	0	1428177..1428503	+	108	18313318	-	PAE2400	-	hypothetical protein
1676	 54.28	0	1428496..1428834	+	112	18313319	-	PAE2402	-	hypothetical protein
1677	 58.90	+1	1428881..1430077	+	398	18313320	-	PAE2403	-	hypothetical protein
1678	 53.80	0	1430131..1430604	+	157	18313321	-	PAE2405	-	hypothetical protein
1679	 54.23	0	1430663..1431643	+	326	18313322	-	PAE2406	-	hypothetical protein
1680	 52.38	0	1431693..1431860	+	55	18313323	-	PAE2407	-	hypothetical protein
1681	 56.76	+1	1431845..1432288	+	147	18313324	-	PAE2408	-	hypothetical protein
1682	 55.92	0	1432293..1433390	+	365	18313325	-	PAE2409	-	hypothetical protein
1683	 55.20	0	1433392..1434150	+	252	18313326	-	PAE2410	-	hypothetical protein
1684	 58.57	+1	1434182..1437280	+	1032	18313327	-	PAE2412	-	hypothetical protein
1685	 55.75	0	1437273..1437785	+	170	18313328	-	PAE2414	-	hypothetical protein
1686	 59.18	+1	1437982..1438248	+	88	18313329	-	PAE2416	-	hypothetical protein
1687	 44.90	-1	1438245..1438538	+	97	18313330	-	PAE2417	-	hypothetical protein
1688	 48.81	0	1438593..1439729	-	378	18313331	-	PAE2419	-	hypothetical protein
1689	 50.35	0	1439757..1440908	-	383	18313332	-	PAE2420	-	cystathionine gamma-synthase
1690	 40.00	-2	1441097..1441726	+	209	18313333	-	PAE2421	-	potassium transport peripheral protein, conjectural
1691	 43.89	-1	1441716..1442435	-	239	18313334	-	PAE2422	-	potassium transport membrane protein, conjectural
1692	 49.71	0	1442456..1444891	-	811	18313335	-	PAE2423	-	phosphoenolpyruvate synthase
1693	 50.36	0	1445017..1445709	-	230	18313336	-	PAE2424	-	hypothetical protein
1694	 52.51	0	1445776..1447011	+	411	18313337	-	PAE2426	-	hypothetical protein
1695	 57.41	+1	1446972..1447133	-	53	18313338	-	PAE2427	-	hypothetical protein
1696	 50.29	0	1447264..1447605	-	113	18313339	-	PAE2429	-	hypothetical protein
1697	 55.14	0	1447602..1448633	-	343	18313340	-	PAE2430	-	o-syaloglycoprotein endopeptidase
1698	 51.01	0	1448634..1448831	-	65	18313341	-	PAE2432	-	30S ribosomal protein S27ae
1699	 46.45	-1	1448834..1449199	-	121	18313342	-	PAE2434	-	ribosomal protein S24
1700	 40.46	-2	1449245..1449679	-	144	18313343	-	PAE2435	-	hypothetical protein
1701	 52.18	0	1449930..1451372	+	480	18313344	-	PAE2438	-	hypothetical protein
1702	 51.15	0	1451349..1451696	-	115	18313345	-	PAE2439	-	hypothetical protein
1703	 46.73	0	1451879..1452520	+	213	18313346	-	PAE2442	-	hypothetical protein
1704	 52.30	0	1452543..1453412	+	289	18313347	-	PAE2445	-	ornithine cyclodeaminase (arcB)
1705	 53.10	0	1453403..1454758	+	451	18313348	-	PAE2446	-	helicase, DNA repair
1706	 48.64	0	1454755..1455891	+	378	18313349	-	PAE2447	-	hypothetical protein
1707	 50.00	0	1456027..1456524	-	165	18313350	-	PAE2449	-	hypothetical protein
1708	 50.76	0	1456627..1456953	+	108	18313351	-	PAE2450	-	ferredoxin
1709	 52.97	0	1456985..1458079	+	364	18313352	-	PAE2451	-	pyruvate formate-lyase activating enzyme-like protein
1710	 60.72	+1	1458059..1458445	-	128	18313353	-	PAE2452	-	paREP13
1711	 51.43	0	1458415..1458972	-	185	18313354	-	PAE2453	-	thymidine kinase
1712	 52.81	0	1458989..1460128	-	379	18313355	-	PAE2454	-	hypothetical protein
1713	 53.57	0	1460135..1460302	-	55	18313356	-	PAE2455	-	30S ribosomal protein S30e
1714	 54.20	0	1460334..1460750	-	138	18313357	-	PAE2456	-	hypothetical protein
1715	 50.63	0	1460787..1462052	+	421	18313358	-	PAE2457	-	arsenite transport protein, conjectural
1716	 54.84	0	1462045..1462746	-	233	18313359	trpA	PAE2458	-	tryptophan synthase subunit alpha
1717	 54.23	0	1462748..1463326	-	192	18313360	-	PAE2459	-	anthranilate synthase component II
1718	 54.69	0	1463317..1464585	-	422	18313361	-	PAE2460	-	anthranilate synthase component I
1719	 57.78	+1	1464582..1465583	-	333	18313362	-	PAE2461	-	anthranilate phosphoribosyltransferase
1720	 60.02	+1	1465624..1466856	-	410	18313363	-	PAE2462	-	tryptophan synthase subunit beta
1721	 41.54	-1	1467115..1469160	-	681	18313364	-	PAE2464	-	ABC transporter ATP-binding component
1722	 40.26	-2	1469157..1469936	-	259	18313365	-	PAE2465	-	branched-chain amino acid ABC transporter, ATP-binding protein, putative
1723	 49.17	0	1470097..1471365	-	422	18313366	-	PAE2466	-	acyl-CoA synthase
1724	 52.10	0	1471462..1472367	-	301	18313367	-	PAE2467	-	fatty acid co-A racemase, conjectural
1725	 53.28	0	1472349..1472744	-	131	18313368	-	PAE2469	-	hypothetical protein
1726	 47.19	0	1472963..1474102	+	379	18313369	-	PAE2471	-	acetyl-CoA C-acyltransferase
1727	 36.81	-2	1474099..1474443	+	114	18313370	-	PAE2472	-	protein associated with acetyl-CoA C-acyltransferase
1728	 44.32	-1	1474430..1476277	-	615	18313371	-	PAE2474	-	acetyl-coenzyme A synthetase
1729	 51.98	0	1476652..1477788	+	378	18313372	-	PAE2475	-	acyl-CoA dehydrogenase
1730	 54.05	0	1477781..1479127	-	448	18313373	-	PAE2477	-	molybdopterin binding oxidoreductase small and medium subunit
1731	 54.37	0	1479124..1481424	-	766	18313374	-	PAE2478	-	molybdopterin binding oxidoreductase large subunit
1732	 53.12	0	1481421..1482269	-	282	18313375	-	PAE2479	-	enoyl-CoA hydratase
1733	 51.77	0	1482197..1483633	-	478	18313376	-	PAE2480	-	aldehyde dehydrogenase
1734	 58.90	+1	1483771..1485651	+	626	18313377	-	PAE2481	-	acetyl-coenzyme A synthetase
1735	 52.94	0	1485788..1485991	+	67	18313378	-	PAE2481a	-	hypothetical protein
1736	 54.55	0	1486470..1486799	+	109	18313379	-	PAE2483	-	hypothetical protein
1737	 54.55	0	1486810..1487106	+	98	18313380	-	PAE2485	-	hypothetical protein
1738	 58.01	+1	1487274..1488416	+	380	18313381	-	PAE2486	-	acetyl-CoA acetyltransferase
1739	 57.74	+1	1488413..1489600	+	395	18313382	-	PAE2488	-	acetyl-CoA acetyltransferase
1740	 56.67	+1	1489597..1490136	+	179	18313383	-	PAE2489	-	protein associated with acetyl-CoA C-acyltransferase
1741	 56.48	0	1490133..1490564	+	143	18313384	-	PAE2490	-	protein associated with acetyl-CoA C-acyltransferase
1742	 52.67	0	1490561..1491703	+	380	18313385	-	PAE2491	-	acyl-CoA dehydrogenase
1743	 59.51	+1	1492090..1492620	+	176	18313386	-	PAE2493	-	paREP7
1744	 50.63	0	1493028..1493825	-	265	18313387	-	PAE2496	-	hypothetical protein
1745	 47.15	0	1494605..1495516	+	303	18313388	-	PAE2498	-	hypothetical protein
1746	 51.20	0	1495559..1496185	+	208	18313389	-	PAE2499	-	phosphoribosyl anthranilate isomerase
1747	 72.22	+2	1496567..1496764	+	65	18313390	-	PAE2500	-	paREP13
1748	 63.07	+2	1496570..1497208	-	212	18313391	-	PAE2503	-	hypothetical protein
1749	 50.85	0	1497354..1497530	-	58	18313392	-	PAE2504	-	hypothetical protein
1750	 53.89	0	1497587..1497907	-	106	18313393	-	PAE2505	-	hypothetical protein
1751	 56.18	0	1497957..1498709	+	250	18313394	-	PAE2506	-	paREP11
1752	 58.18	+1	1498697..1499509	-	270	18313395	-	PAE2508	-	hypothetical protein
1753	 52.58	0	1499696..1499908	+	70	18313396	-	PAE2509	-	paREP7
1754	 52.94	0	1500280..1500789	-	169	18313397	-	PAE2511	-	hypothetical protein
1755	 48.03	0	1500897..1501352	+	151	18313398	-	PAE2513	-	hypothetical protein
1756	 54.76	0	1501418..1502005	+	195	18313399	-	PAE2514	-	hypothetical protein
1757	 55.56	0	1502052..1503203	-	383	18313400	-	PAE2515	-	acetylornithine aminotransferase (argD)
1758	 48.02	0	1503233..1503409	+	58	18313401	-	PAE2516	-	hypothetical protein
1759	 50.22	0	1503459..1503689	+	76	18313402	-	PAE2518	-	hypothetical protein
1760	 60.09	+1	1503755..1505260	+	501	18313403	-	PAE2520	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.