IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1593	 48.12	0	1353279..1355111	-	610	18313236	-	PAE2285	-	hypothetical protein
1594	 52.03	0	1355108..1355872	-	254	18313237	-	PAE2286	-	ABC transporter ATP-binding protein, putative
1595	 49.82	0	1355863..1357002	-	379	18313238	-	PAE2288	-	hypothetical protein
1596	 46.57	0	1357060..1359642	+	860	18313239	-	PAE2290	-	hypothetical protein
1597	 50.82	0	1359659..1359841	+	60	18313240	-	PAE2291	-	hypothetical protein
1598	 49.83	0	1359868..1360443	+	191	18313241	-	PAE2293	-	hypothetical protein
1599	 43.18	-1	1360556..1360687	+	43	18313242	-	PAE2294	-	hypothetical protein
1600	 50.97	0	1360689..1361663	+	324	18313243	-	PAE2295	-	hypothetical protein
1601	 48.25	0	1361660..1362316	-	218	18313244	-	PAE2296	-	hypothetical protein
1602	 50.25	0	1362414..1364813	+	799	18313245	valS	PAE2297	-	valyl-tRNA synthetase
1603	 52.89	0	1364810..1367044	-	744	18313246	-	PAE2298	-	ATP-dependent helicase
1604	 52.34	0	1367128..1367853	+	241	18313247	-	PAE2299	-	hypothetical protein
1605	 43.09	-1	1367941..1369026	+	361	18313248	-	PAE2301	-	ABC transporter ATP-binding component, degenerate
1606	 55.68	0	1370056..1371138	-	360	18313249	-	PAE2306	-	resistance protein, conjectural
1607	 49.49	0	1371135..1371629	-	164	18313250	-	PAE2307	-	hypothetical protein
1608	 48.37	0	1371714..1372112	+	132	18313251	-	PAE2309	-	ferric uptake regulator, putative
1609	 55.56	0	1372219..1373469	+	416	18313252	-	PAE2310	-	proline dehydrogenase
1610	 49.71	0	1373466..1373636	+	56	18313253	-	PAE2311	-	hypothetical protein
1611	 53.26	0	1373689..1374837	+	382	18313254	-	PAE2312	-	succinyl-CoA synthetase beta subunit (sucC)
1612	 57.71	+1	1374834..1375715	+	293	18313255	-	PAE2313	-	succinyl-CoA synthetase alpha subunit (sucD)
1613	 48.58	0	1376017..1377216	+	399	18313256	-	PAE2315	-	aminotransferase, class I
1614	 48.93	0	1377213..1378424	+	403	18313257	-	PAE2316	-	threonine dehydratase
1615	 50.63	0	1378453..1379169	+	238	18313258	-	PAE2317	-	alanyl-tRNA synthetase related protein
1616	 47.54	0	1379169..1380695	+	508	18313259	-	PAE2319	-	hypothetical protein
1617	 43.86	-1	1381310..1382278	+	322	18313260	-	PAE2322	-	hypothetical protein
1618	 47.86	0	1382268..1383086	-	272	18313261	-	PAE2323	-	hypothetical protein
1619	 44.23	-1	1383206..1383517	+	103	18313262	-	PAE2325	-	divalent cation tolerance protein, conjectural
1620	 50.24	0	1383510..1384745	+	411	18313263	-	PAE2326	-	cofactor-independent phosphoglycerate mutase
1621	 45.83	-1	1384745..1385032	+	95	18313264	-	PAE2326a	-	hypothetical protein
1622	 48.47	0	1384988..1385608	-	206	18313265	-	PAE2328	-	hypothetical protein
1623	 49.87	0	1385598..1386752	-	384	18313266	-	PAE2330	-	sugar transporter, conjectural
1624	 46.30	-1	1387006..1387761	-	251	18313267	-	PAE2331	-	hypothetical protein
1625	 50.77	0	1387774..1388742	-	322	18313268	-	PAE2332	-	alcohol dehydrogenase (Zinc)
1626	 48.14	0	1388739..1390379	-	546	18313269	-	PAE2333	-	medium-chain acyl-CoA ligase
1627	 50.50	0	1390466..1391659	+	397	18313270	-	PAE2335	-	succinyl-diaminopimelate desuccinylase
1628	 50.42	0	1391649..1392473	-	274	18313271	-	PAE2336	-	hypothetical protein
1629	 49.85	0	1392479..1392805	+	108	18313272	-	PAE2337	-	hypothetical protein
1630	 44.44	-1	1392809..1393492	+	227	18313273	-	PAE2338	-	hypothetical protein
1631	 47.52	0	1393479..1394444	-	321	18313274	-	PAE2340	-	hypothetical protein
1632	 52.75	0	1394441..1394749	-	102	18313275	-	PAE2341	-	hypothetical protein
1633	 45.60	-1	1394791..1395426	-	211	18313276	-	PAE2343	-	hypothetical protein
1634	 42.70	-1	1395426..1395788	-	120	18313277	-	PAE2344	-	hypothetical protein
1635	 48.03	0	1395988..1396620	+	210	18313278	-	PAE2346	-	hypothetical protein
1636	 54.09	0	1396591..1397226	-	211	18313279	-	PAE2348	-	hypothetical protein
1637	 47.14	0	1397211..1397630	-	139	18313280	-	PAE2349	-	hypothetical protein
1638	 52.94	0	1397662..1398069	-	135	18313281	-	PAE2350	-	hypothetical protein
1639	 49.75	0	1398131..1399903	-	590	18313282	-	PAE2352	-	putative ATPase RIL
1640	 46.58	0	1400027..1400260	-	77	18313283	-	PAE2354	-	hypothetical protein
1641	 50.52	0	1400251..1401315	-	354	18313284	-	PAE2355	-	glycosyl transferase
1642	 44.44	-1	1401447..1401950	+	167	18313285	-	PAE2357	-	hypothetical protein
1643	 40.70	-2	1401981..1402265	+	94	18313286	-	PAE2358	-	hypothetical protein
1644	 44.72	-1	1402253..1402981	-	242	18313287	-	PAE2359	-	hypothetical protein
1645	 46.27	-1	1403021..1404025	+	334	18313288	-	PAE2361	-	sugar phospate transferase
1646	 48.69	0	1404002..1406788	-	928	18313289	-	PAE2362	-	ATP-dependent helicase
1647	 47.67	0	1406848..1407363	+	171	18313290	-	PAE2363	-	hypothetical protein
1648	 43.46	-1	1407337..1408185	-	282	18313291	-	PAE2364	-	hypothetical protein
1649	 50.35	0	1408202..1408765	-	187	18313292	-	PAE2365	-	nucleoside-triphosphatase (NTPase)
1650	 49.86	0	1408765..1409496	-	243	18313293	-	PAE2366	-	glutaredoxin-like protein
1651	 45.80	-1	1409521..1409913	-	130	18313294	-	PAE2367	-	hypothetical protein
1652	 50.43	0	1409941..1410870	-	309	18313295	-	PAE2370	-	malate dehydrogenase
1653	 52.49	0	1410938..1412284	-	448	18313296	-	PAE2371	-	NADH oxidase (nox)
1654	 56.10	0	1412613..1412735	-	40	18313297	-	PAE2374	-	hypothetical protein
1655	 50.91	0	1412808..1413683	+	291	18313298	-	PAE2375	-	4-hydroxybenzoate octaprenyltransferase (ubiA)
1656	 51.65	0	1413622..1414773	-	383	18313299	-	PAE2376	-	drug resistance protein, conjectural
1657	 48.90	0	1414733..1415323	-	196	18313300	-	PAE2377	-	ribosomal protein L6
1658	 50.87	0	1415390..1415965	-	191	18313301	-	PAE2378	-	hypothetical protein
1659	 45.21	-1	1415981..1416199	-	72	18313302	-	PAE2380	-	hypothetical protein
1660	 41.49	-1	1416466..1416894	+	142	18313303	-	PAE2382	-	hypothetical protein
1661	 50.97	0	1416923..1417336	+	137	18313304	-	PAE2384	-	universal stress protein
1662	 48.50	0	1417333..1418064	-	243	18313305	-	PAE2385	-	transport protein part 2, authentic frameshift
1663	 52.62	0	1417995..1418528	-	177	18313306	-	PAE2385a	-	transport protein part 1, authentic frameshift
1664	 51.00	0	1418606..1419256	+	216	18313307	-	PAE2387	-	hypothetical protein
1665	 50.14	0	1419224..1419955	-	243	18313308	-	PAE2388	-	hypothetical protein
1666	 51.98	0	1420061..1420237	+	58	18313309	-	PAE2389	-	preprotein translocase subunit SecG
1667	 52.10	0	1420414..1422006	+	530	18313310	-	PAE2391	-	dipeptide binding protein
1668	 53.49	0	1422003..1422791	-	262	18313311	-	PAE2392	-	dipeptide transport permease
1669	 50.39	0	1422791..1423804	-	337	18313312	-	PAE2393	-	dipeptide transport permease
1670	 53.13	0	1424332..1425018	+	228	18313313	-	PAE2394	-	hypothetical protein
1671	 49.41	0	1425023..1425619	+	198	18313314	-	PAE2396	-	hypothetical protein
1672	 38.67	-2	1425612..1425911	+	99	18313315	-	PAE2397	-	hypothetical protein
1673	 49.50	0	1425908..1426612	+	234	18313316	-	PAE2398	-	hypothetical protein
1674	 57.08	+1	1426609..1428141	+	510	18313317	-	PAE2399	-	type II secretion system protein, conjectural
1675	 53.21	0	1428177..1428503	+	108	18313318	-	PAE2400	-	hypothetical protein
1676	 54.28	0	1428496..1428834	+	112	18313319	-	PAE2402	-	hypothetical protein
1677	 58.90	+1	1428881..1430077	+	398	18313320	-	PAE2403	-	hypothetical protein
1678	 53.80	0	1430131..1430604	+	157	18313321	-	PAE2405	-	hypothetical protein
1679	 54.23	0	1430663..1431643	+	326	18313322	-	PAE2406	-	hypothetical protein
1680	 52.38	0	1431693..1431860	+	55	18313323	-	PAE2407	-	hypothetical protein
1681	 56.76	+1	1431845..1432288	+	147	18313324	-	PAE2408	-	hypothetical protein
1682	 55.92	0	1432293..1433390	+	365	18313325	-	PAE2409	-	hypothetical protein
1683	 55.20	0	1433392..1434150	+	252	18313326	-	PAE2410	-	hypothetical protein
1684	 58.57	+1	1434182..1437280	+	1032	18313327	-	PAE2412	-	hypothetical protein
1685	 55.75	0	1437273..1437785	+	170	18313328	-	PAE2414	-	hypothetical protein
1686	 59.18	+1	1437982..1438248	+	88	18313329	-	PAE2416	-	hypothetical protein
1687	 44.90	-1	1438245..1438538	+	97	18313330	-	PAE2417	-	hypothetical protein
1688	 48.81	0	1438593..1439729	-	378	18313331	-	PAE2419	-	hypothetical protein
1689	 50.35	0	1439757..1440908	-	383	18313332	-	PAE2420	-	cystathionine gamma-synthase
1690	 40.00	-2	1441097..1441726	+	209	18313333	-	PAE2421	-	potassium transport peripheral protein, conjectural
1691	 43.89	-1	1441716..1442435	-	239	18313334	-	PAE2422	-	potassium transport membrane protein, conjectural
1692	 49.71	0	1442456..1444891	-	811	18313335	-	PAE2423	-	phosphoenolpyruvate synthase
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.