IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1525	 52.32	0	1296321..1297442	-	373	18313168	-	PAE2191	-	pyruvate formate-lyase activating enzyme-like protein
1526	 47.96	0	1297511..1298146	+	211	18313169	-	PAE2192	-	hypothetical protein
1527	 50.64	0	1299052..1299594	+	180	18313170	-	PAE2196	-	hypothetical protein
1528	 50.17	0	1299586..1300476	-	296	18313171	-	PAE2197	-	phosphoesterase
1529	 43.84	-1	1300461..1300736	-	91	18313172	-	PAE2198	-	hypothetical protein
1530	 48.56	0	1300741..1301121	-	126	18313173	-	PAE2199	-	hypothetical protein
1531	 50.48	0	1301155..1301364	-	69	18313174	-	PAE2200	-	hypothetical protein
1532	 46.34	-1	1301357..1301902	-	181	18313175	-	PAE2201	-	hypothetical protein
1533	 52.52	0	1301881..1302198	-	105	18313176	rpl37ae	PAE2202	-	50S ribosomal protein L37Ae
1534	 54.67	0	1302800..1303624	-	274	18313177	-	PAE2206	-	exosome complex RNA-binding protein Rrp42
1535	 54.79	0	1303626..1304366	-	246	18313178	-	PAE2207	-	exosome complex exonuclease Rrp41
1536	 48.87	0	1304363..1305070	-	235	18313179	-	PAE2208	-	exosome complex RNA-binding protein Rrp4
1537	 50.21	0	1305070..1305768	-	232	18313180	-	PAE2209	-	putative RNA-associated protein
1538	 49.26	0	1305871..1306743	-	290	18313181	-	PAE2210	-	hypothetical protein
1539	 46.43	-1	1306782..1307705	+	307	18313182	-	PAE2211	-	hypothetical protein
1540	 44.00	-1	1307721..1307945	-	74	18313183	-	PAE2212	-	hypothetical protein
1541	 47.48	0	1307960..1308376	-	138	18313184	-	PAE2213	-	hypothetical protein
1542	 44.70	-1	1308425..1308688	+	87	18313185	-	PAE2214	-	hypothetical protein
1543	 48.22	0	1308685..1309416	-	243	18313186	-	PAE2215	-	proteasome subunit alpha
1544	 48.17	0	1309784..1311367	+	527	18313187	-	PAE2217	-	DNA topoisomerase VI subunit B
1545	 47.74	0	1311403..1312506	+	367	18313188	-	PAE2219	-	DNA topoisomerase VI subunit A
1546	 48.62	0	1312578..1313591	+	337	18313189	-	PAE2220	-	hypothetical protein
1547	 50.83	0	1313819..1313938	-	39	18313190	-	PAE2222a	-	hypothetical protein
1548	 52.87	0	1314042..1314128	-	28	18313191	-	PAE2222b	-	hypothetical protein
1549	 45.68	-1	1314369..1314854	-	161	18313192	-	PAE2224	-	hypothetical protein
1550	 47.38	0	1314844..1315683	-	279	18313193	-	PAE2225	-	hypothetical protein
1551	 45.52	-1	1315733..1316011	+	92	18313194	-	PAE2226	-	chromatin protein
1552	 53.76	0	1316157..1316435	-	92	18313195	-	PAE2229	-	paREP2a
1553	 52.11	0	1316508..1317998	+	496	18313196	-	PAE2230	-	paREP2b
1554	 44.09	-1	1317974..1318066	+	30	18313197	-	PAE2231	-	paREP2b
1555	 51.37	0	1318103..1319377	+	424	18313198	-	PAE2232	-	hypothetical protein
1556	 50.09	0	1319406..1320527	+	373	18313199	-	PAE2233	-	hypothetical protein
1557	 53.56	0	1320520..1320870	+	116	18313200	-	PAE2234	-	hypothetical protein
1558	 48.51	0	1321101..1321871	-	256	18313201	-	PAE2237	-	N-glycosylase/DNA lyase
1559	 46.05	-1	1321837..1322874	-	345	161485620	-	PAE2238	-	DNA primase large subunit
1560	 47.04	0	1322918..1323997	-	359	18313203	-	PAE2239	-	hypothetical protein
1561	 47.65	0	1323990..1324904	-	304	18313204	-	PAE2240	-	hypothetical protein
1562	 47.10	0	1324990..1326267	+	425	18313205	-	PAE2242	-	hypothetical protein
1563	 49.28	0	1326358..1327122	-	254	18313206	-	PAE2243	-	hypothetical protein
1564	 48.34	0	1327074..1327646	-	190	18313207	-	PAE2244	-	hypothetical protein
1565	 47.50	0	1327968..1328468	+	166	18313208	-	PAE2246	-	N-acetyltransferase
1566	 45.19	-1	1328554..1331412	+	952	18313209	-	PAE2247	-	hypothetical protein
1567	 45.54	-1	1331402..1331917	+	171	18313210	-	PAE2248	-	hypothetical protein
1568	 48.06	0	1331917..1332663	+	248	18313211	-	PAE2249	-	hypothetical protein
1569	 53.10	0	1332872..1334065	+	397	18313212	-	PAE2251	-	aspartate aminotransferase (aspC), conjectural
1570	 47.26	0	1334062..1334535	+	157	18313213	-	PAE2253	-	mutT/nudix family protein
1571	 48.58	0	1334515..1335078	-	187	18313214	-	PAE2254	-	hypothetical protein
1572	 50.80	0	1335152..1336021	+	289	18313215	-	PAE2255	-	hypothetical protein
1573	 37.25	-2	1336047..1336352	+	101	18313216	-	PAE2256	-	hypothetical protein
1574	 51.48	0	1336685..1336921	-	78	18313217	-	PAE2257	-	hypothetical protein
1575	 40.25	-2	1336921..1337079	-	52	18313218	rpoP	PAE2258	-	DNA-directed RNA polymerase subunit P
1576	 53.65	0	1337102..1337608	-	168	18313219	-	PAE2259	-	hypothetical protein
1577	 52.24	0	1337859..1338662	-	267	18313220	-	PAE2260	-	agmatinase (speB)
1578	 48.71	0	1338655..1339545	-	296	18313221	-	PAE2261	-	cation efflux system protein, conjectural
1579	 54.46	0	1339624..1341180	-	518	18313222	-	PAE2263	-	paREP2b
1580	 52.12	0	1341212..1341589	+	125	18313223	-	PAE2265	-	paREP2a
1581	 52.47	0	1341602..1343362	+	586	18313224	-	PAE2266	-	glycyl-tRNA synthetase
1582	 49.29	0	1343419..1343769	+	116	18313225	-	PAE2268	-	hypothetical protein
1583	 50.00	0	1343766..1344317	+	183	18313226	-	PAE2269	-	tRNA-splicing endonuclease subunit alpha
1584	 49.35	0	1344314..1344700	-	128	18313227	-	PAE2270	-	small heat shock protein, hsp20 homolog, conjectural
1585	 46.85	0	1344800..1345021	-	73	18313228	-	PAE2272	-	hypothetical protein
1586	 49.09	0	1345066..1345782	+	238	18313229	-	PAE2273	-	reductase, putative
1587	 49.12	0	1345813..1346154	+	113	18313230	-	PAE2275	-	hypothetical protein
1588	 47.73	0	1346178..1347476	+	432	18313231	-	PAE2276	-	hypothetical protein
1589	 47.04	0	1347490..1348080	+	196	18313232	-	PAE2278	-	actin-like protein
1590	 48.60	0	1348265..1350649	+	794	18313233	-	PAE2280	-	hypothetical protein
1591	 45.56	-1	1350720..1351439	-	239	18313234	-	PAE2282	-	hypothetical protein
1592	 49.57	0	1351520..1353262	+	580	18313235	-	PAE2284	-	molybdenum cofactor biosynthesis protein (moaA)
1593	 48.12	0	1353279..1355111	-	610	18313236	-	PAE2285	-	hypothetical protein
1594	 52.03	0	1355108..1355872	-	254	18313237	-	PAE2286	-	ABC transporter ATP-binding protein, putative
1595	 49.82	0	1355863..1357002	-	379	18313238	-	PAE2288	-	hypothetical protein
1596	 46.57	0	1357060..1359642	+	860	18313239	-	PAE2290	-	hypothetical protein
1597	 50.82	0	1359659..1359841	+	60	18313240	-	PAE2291	-	hypothetical protein
1598	 49.83	0	1359868..1360443	+	191	18313241	-	PAE2293	-	hypothetical protein
1599	 43.18	-1	1360556..1360687	+	43	18313242	-	PAE2294	-	hypothetical protein
1600	 50.97	0	1360689..1361663	+	324	18313243	-	PAE2295	-	hypothetical protein
1601	 48.25	0	1361660..1362316	-	218	18313244	-	PAE2296	-	hypothetical protein
1602	 50.25	0	1362414..1364813	+	799	18313245	valS	PAE2297	-	valyl-tRNA synthetase
1603	 52.89	0	1364810..1367044	-	744	18313246	-	PAE2298	-	ATP-dependent helicase
1604	 52.34	0	1367128..1367853	+	241	18313247	-	PAE2299	-	hypothetical protein
1605	 43.09	-1	1367941..1369026	+	361	18313248	-	PAE2301	-	ABC transporter ATP-binding component, degenerate
1606	 55.68	0	1370056..1371138	-	360	18313249	-	PAE2306	-	resistance protein, conjectural
1607	 49.49	0	1371135..1371629	-	164	18313250	-	PAE2307	-	hypothetical protein
1608	 48.37	0	1371714..1372112	+	132	18313251	-	PAE2309	-	ferric uptake regulator, putative
1609	 55.56	0	1372219..1373469	+	416	18313252	-	PAE2310	-	proline dehydrogenase
1610	 49.71	0	1373466..1373636	+	56	18313253	-	PAE2311	-	hypothetical protein
1611	 53.26	0	1373689..1374837	+	382	18313254	-	PAE2312	-	succinyl-CoA synthetase beta subunit (sucC)
1612	 57.71	+1	1374834..1375715	+	293	18313255	-	PAE2313	-	succinyl-CoA synthetase alpha subunit (sucD)
1613	 48.58	0	1376017..1377216	+	399	18313256	-	PAE2315	-	aminotransferase, class I
1614	 48.93	0	1377213..1378424	+	403	18313257	-	PAE2316	-	threonine dehydratase
1615	 50.63	0	1378453..1379169	+	238	18313258	-	PAE2317	-	alanyl-tRNA synthetase related protein
1616	 47.54	0	1379169..1380695	+	508	18313259	-	PAE2319	-	hypothetical protein
1617	 43.86	-1	1381310..1382278	+	322	18313260	-	PAE2322	-	hypothetical protein
1618	 47.86	0	1382268..1383086	-	272	18313261	-	PAE2323	-	hypothetical protein
1619	 44.23	-1	1383206..1383517	+	103	18313262	-	PAE2325	-	divalent cation tolerance protein, conjectural
1620	 50.24	0	1383510..1384745	+	411	18313263	-	PAE2326	-	cofactor-independent phosphoglycerate mutase
1621	 45.83	-1	1384745..1385032	+	95	18313264	-	PAE2326a	-	hypothetical protein
1622	 48.47	0	1384988..1385608	-	206	18313265	-	PAE2328	-	hypothetical protein
1623	 49.87	0	1385598..1386752	-	384	18313266	-	PAE2330	-	sugar transporter, conjectural
1624	 46.30	-1	1387006..1387761	-	251	18313267	-	PAE2331	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.