IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1442	 53.91	0	1227600..1228994	-	464	18313085	-	PAE2082	-	branched-chain amino acid binding protein
1443	 51.25	0	1229054..1230013	+	319	18313086	-	PAE2083	-	branched-chain amino acid transport permease protein
1444	 54.70	0	1230010..1231095	+	361	18313087	-	PAE2084	-	branched-chain amino acid transport permease protein
1445	 53.48	0	1231206..1231751	+	181	18313088	-	PAE2085	-	peroxiredoxin
1446	 55.70	0	1231673..1232137	-	154	18313089	-	PAE2087a	-	hypothetical protein
1447	 56.15	0	1232161..1232892	-	243	18313090	-	PAE2089	-	short chain dehydrogenase family protein
1448	 53.69	0	1232919..1233419	+	166	18313091	-	PAE2091	-	hypothetical protein
1449	 57.58	+1	1234087..1235175	-	362	18313092	-	PAE2095	-	hypothetical protein
1450	 51.00	0	1235212..1236060	+	282	18313093	-	PAE2096	-	solute-binding family 3 protein
1451	 52.12	0	1236092..1236256	+	54	18313094	rps14P	PAE2097	-	30S ribosomal protein S14P
1452	 47.33	0	1236291..1236683	+	130	18313095	rps8p	PAE2098	-	30S ribosomal protein S8P
1453	 51.42	0	1236716..1237174	+	152	18313096	rpl32e	PAE2099	-	50S ribosomal protein L32e
1454	 52.93	0	1237176..1237619	+	147	18313097	rpl19e	PAE2100	-	50S ribosomal protein L19e
1455	 51.46	0	1237621..1238238	+	205	18313098	rpl18p	PAE2101	-	50S ribosomal protein L18P
1456	 49.00	0	1238587..1238937	+	116	18313099	-	PAE2104	-	hypothetical protein
1457	 55.21	0	1239214..1239501	-	95	18313100	-	PAE2105	-	paREP2b
1458	 57.45	+1	1239626..1239766	+	46	18313101	-	PAE2106	-	paREP2a
1459	 51.55	0	1239797..1240054	+	85	18313102	-	PAE2108	-	paREP2a
1460	 51.61	0	1240114..1242471	+	785	18313103	-	PAE2109	-	DNA polymerase II
1461	 58.77	+1	1242523..1242636	-	37	18313104	-	PAE2110	-	hypothetical protein
1462	 51.52	0	1242694..1242858	+	54	18313105	-	PAE2111	-	paREP2a
1463	 47.84	0	1243025..1244251	-	408	18313106	-	PAE2112	-	DNA primase
1464	 52.17	0	1244477..1245352	+	291	18313107	-	PAE2116	-	methionine aminopeptidase
1465	 51.82	0	1245393..1247042	+	549	18313108	-	PAE2117	-	thermosome (chaperonin) alpha subunit
1466	 43.66	-1	1247039..1247590	-	183	18313109	-	PAE2118	-	hypothetical protein
1467	 45.93	-1	1247580..1248611	-	343	18313110	-	PAE2119	-	conjugal transfer protein, conjectural
1468	 43.75	-1	1248583..1249062	-	159	18313111	-	PAE2120	-	transcription initiation factor IIB, conjectural
1469	 42.22	-1	1249190..1249504	+	104	18313112	-	PAE2121	-	hypothetical protein
1470	 48.51	0	1249540..1249974	+	144	18313113	-	PAE2122	-	small nuclear ribonucleoprotein homolog (Sm-like)
1471	 52.62	0	1250204..1251043	-	279	18313114	-	PAE2125	-	paREP2a
1472	 50.26	0	1251033..1251410	-	125	18313115	-	PAE2127	-	paREP2a
1473	 56.85	+1	1251568..1252596	+	342	18313116	-	PAE2128	-	paREP2b
1474	 52.45	0	1252640..1255615	+	991	18313117	-	PAE2129	-	paREP2b
1475	 50.27	0	1255648..1258392	-	914	18313118	-	PAE2130	-	ATP-dependent helicase, putative
1476	 52.97	0	1258554..1259159	-	201	18313119	-	PAE2131	-	fumarate hydratase class I beta subunit
1477	 53.29	0	1259265..1260131	+	288	18313120	-	PAE2132	-	fumarate hydratase class I alpha subunit
1478	 51.23	0	1260123..1260284	-	53	18313121	-	PAE2133	-	hypothetical protein
1479	 54.37	0	1260314..1260736	+	140	18313122	-	PAE2134	-	hypothetical protein
1480	 45.74	-1	1260733..1261014	-	93	18313123	-	PAE2135	-	hypothetical protein
1481	 55.32	0	1261160..1261300	+	46	18313124	-	PAE2136	-	paREP2a
1482	 51.71	0	1261471..1261851	-	126	18313125	-	PAE2137	-	hypothetical protein
1483	 51.79	0	1261955..1262848	+	297	18313126	-	PAE2138	-	hypothetical protein
1484	 47.25	0	1263016..1263324	-	102	18313127	-	PAE2138a	-	hypothetical protein
1485	 38.98	-2	1263958..1264134	+	58	18313128	-	PAE2140	-	hypothetical protein
1486	 48.02	0	1264390..1264566	+	58	18313129	-	PAE2142	-	hypothetical protein
1487	 52.08	0	1264883..1265122	-	79	18313130	-	PAE2144	-	hypothetical protein
1488	 45.77	-1	1265393..1265593	-	66	18313131	-	PAE2146	-	hypothetical protein
1489	 41.77	-1	1265617..1266339	-	240	18313132	-	PAE2147	-	hypothetical protein
1490	 42.05	-1	1266345..1266539	-	64	18313133	-	PAE2148	-	hypothetical protein
1491	 42.42	-1	1266794..1267222	+	142	18313134	-	PAE2149	-	hypothetical protein
1492	 47.25	0	1267267..1268229	+	320	18313135	-	PAE2151	-	hypothetical protein
1493	 47.52	0	1268260..1268823	+	187	18313136	-	PAE2152	-	hypothetical protein
1494	 52.19	0	1268789..1269859	+	356	18313137	-	PAE2153	-	hypothetical protein
1495	 50.73	0	1269856..1271022	-	388	18313138	-	PAE2154	-	hypothetical protein
1496	 49.82	0	1271022..1272380	-	452	18313139	-	PAE2155	-	hypothetical protein
1497	 49.45	0	1272399..1273031	-	210	18313140	-	PAE2157	-	hypothetical protein
1498	 50.85	0	1273007..1273594	-	195	18313141	-	PAE2158	-	fuculose-1-phosphate aldolase (fucA)
1499	 52.42	0	1273630..1274991	-	453	18313142	-	PAE2159	-	hypothetical protein
1500	 53.98	0	1275024..1275701	-	225	18313143	-	PAE2160	-	hypothetical protein
1501	 48.10	0	1275730..1275966	-	78	18313144	-	PAE2161	-	hypothetical protein
1502	 48.76	0	1275987..1276388	-	133	18313145	-	PAE2162	-	Holliday junction resolvase
1503	 48.06	0	1276385..1276873	-	162	18313146	-	PAE2163	-	hypothetical protein
1504	 50.83	0	1276870..1277469	-	199	18313147	-	PAE2164	-	transcription factor
1505	 50.10	0	1277564..1279030	-	488	18313148	-	PAE2165	-	prolyl-tRNA synthetase
1506	 51.11	0	1279513..1280277	-	254	18313149	-	PAE2166	-	beta-aspartate methyltransferase (pimT), conjectural
1507	 53.50	0	1280300..1280785	-	161	18313150	-	PAE2167	-	hypothetical protein
1508	 46.13	-1	1281175..1281471	+	98	18313151	-	PAE2169	-	30S ribosomal protein S26e
1509	 54.55	0	1282069..1282431	+	120	18313152	-	PAE2171	-	paREP2b, degenerate
1510	 51.45	0	1282361..1282807	+	148	18313153	-	PAE2173	-	paREP2b, degenerate
1511	 48.44	0	1283354..1283770	+	138	18313154	-	PAE2175	-	hypothetical protein
1512	 51.57	0	1283807..1284349	+	180	18313155	-	PAE2176	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA)
1513	 43.72	-1	1284398..1284811	+	137	18313156	-	PAE2177	-	hypothetical protein
1514	 43.24	-1	1285314..1286585	+	423	18313157	-	PAE2179	-	hypothetical protein
1515	 44.94	-1	1286960..1289527	-	855	18313158	-	PAE2180	-	DNA polymerase I
1516	 41.36	-2	1289617..1290027	+	136	18313159	-	PAE2181	-	hypothetical protein
1517	 51.04	0	1290020..1291216	-	398	18313160	-	PAE2182	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
1518	 48.87	0	1291245..1292351	+	368	18313161	-	PAE2183	-	acetyl-CoA C-acyltransferase
1519	 50.75	0	1292385..1292786	+	133	18313162	-	PAE2184	-	protein associated with acetyl-CoA C-acyltransferase
1520	 51.76	0	1292783..1293835	+	350	18313163	-	PAE2185	-	hypothetical protein
1521	 38.22	-2	1293920..1294144	+	74	18313164	-	PAE2186	-	hypothetical protein
1522	 47.29	0	1294172..1294780	+	202	18313165	-	PAE2187	-	hypothetical protein
1523	 44.74	-1	1294950..1295282	+	110	18313166	-	PAE2188	-	30S ribosomal protein S25e
1524	 50.17	0	1295438..1296328	+	296	18313167	-	PAE2190	-	hypothetical protein
1525	 52.32	0	1296321..1297442	-	373	18313168	-	PAE2191	-	pyruvate formate-lyase activating enzyme-like protein
1526	 47.96	0	1297511..1298146	+	211	18313169	-	PAE2192	-	hypothetical protein
1527	 50.64	0	1299052..1299594	+	180	18313170	-	PAE2196	-	hypothetical protein
1528	 50.17	0	1299586..1300476	-	296	18313171	-	PAE2197	-	phosphoesterase
1529	 43.84	-1	1300461..1300736	-	91	18313172	-	PAE2198	-	hypothetical protein
1530	 48.56	0	1300741..1301121	-	126	18313173	-	PAE2199	-	hypothetical protein
1531	 50.48	0	1301155..1301364	-	69	18313174	-	PAE2200	-	hypothetical protein
1532	 46.34	-1	1301357..1301902	-	181	18313175	-	PAE2201	-	hypothetical protein
1533	 52.52	0	1301881..1302198	-	105	18313176	rpl37ae	PAE2202	-	50S ribosomal protein L37Ae
1534	 54.67	0	1302800..1303624	-	274	18313177	-	PAE2206	-	exosome complex RNA-binding protein Rrp42
1535	 54.79	0	1303626..1304366	-	246	18313178	-	PAE2207	-	exosome complex exonuclease Rrp41
1536	 48.87	0	1304363..1305070	-	235	18313179	-	PAE2208	-	exosome complex RNA-binding protein Rrp4
1537	 50.21	0	1305070..1305768	-	232	18313180	-	PAE2209	-	putative RNA-associated protein
1538	 49.26	0	1305871..1306743	-	290	18313181	-	PAE2210	-	hypothetical protein
1539	 46.43	-1	1306782..1307705	+	307	18313182	-	PAE2211	-	hypothetical protein
1540	 44.00	-1	1307721..1307945	-	74	18313183	-	PAE2212	-	hypothetical protein
1541	 47.48	0	1307960..1308376	-	138	18313184	-	PAE2213	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.