IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 37.60	-2	1208872..1209948	-	358	18313060	-	PAE2051	-	alcohol dehydrogenase (Zinc)
1418	 57.74	+1	1210031..1211833	+	600	18313061	-	PAE2052	-	aldehyde ferredoxin oxidoreductase (aor)
1419	 57.61	+1	1211822..1213036	-	404	18313062	-	PAE2053	-	pleiotropic regulatory protein, conjectural
1420	 56.39	0	1213066..1213503	+	145	18313063	-	PAE2054	-	hypothetical protein
1421	 49.61	0	1213500..1213886	-	128	18313064	-	PAE2055	-	hypothetical protein
1422	 52.11	0	1213966..1214178	+	70	18313065	-	PAE2056	-	hypothetical protein
1423	 50.45	0	1214179..1214289	-	36	18313066	-	PAE2057	-	paREP6 part 2, authentic frameshift
1424	 54.32	0	1214311..1214391	-	26	18313067	-	PAE2057a	-	paREP6 part 1, authentic frameshift
1425	 57.64	+1	1214438..1214980	+	180	18313068	-	PAE2058	-	hypothetical protein
1426	 59.41	+1	1214918..1216144	-	408	18313069	-	PAE2059	-	hypothetical protein
1427	 55.51	0	1216201..1217016	-	271	18313070	-	PAE2060	-	hypothetical protein
1428	 61.75	+2	1217017..1217382	-	121	18313071	-	PAE2062	-	hypothetical protein
1429	 58.28	+1	1217956..1218432	-	158	18313072	-	PAE2063	-	paREP2b
1430	 58.97	+1	1218466..1218582	-	38	18313073	-	PAE2066	-	paREP2b
1431	 57.90	+1	1219141..1219722	-	193	18313074	-	PAE2069	-	hypothetical protein
1432	 56.16	0	1219748..1220965	+	405	18313075	-	PAE2070	-	acyl-CoA dehydrogenase
1433	 52.01	0	1221013..1221708	+	231	18313076	-	PAE2071	-	adenine phosphoribosyltransferase
1434	 55.64	0	1221738..1222154	+	138	18313077	-	PAE2072	-	hypothetical protein
1435	 55.56	0	1222151..1222960	+	269	18313078	-	PAE2074	-	hypothetical protein
1436	 57.40	+1	1223053..1223829	-	258	18313079	-	PAE2075	-	nitrilase, conjectural
1437	 56.36	0	1223994..1224614	+	206	18313080	-	PAE2077	-	hypothetical protein
1438	 52.44	0	1224594..1225289	-	231	18313081	-	PAE2078	-	hypothetical protein
1439	 57.50	+1	1225366..1225878	+	170	18313082	-	PAE2079	-	hypothetical protein
1440	 49.72	0	1226187..1226888	-	233	18313083	-	PAE2080	-	branched-chain amino acid transport ATP-binding protein
1441	 54.97	0	1226885..1227628	-	247	18313084	-	PAE2081	-	branched-chain amino acid transport ATP-binding protein
1442	 53.91	0	1227600..1228994	-	464	18313085	-	PAE2082	-	branched-chain amino acid binding protein
1443	 51.25	0	1229054..1230013	+	319	18313086	-	PAE2083	-	branched-chain amino acid transport permease protein
1444	 54.70	0	1230010..1231095	+	361	18313087	-	PAE2084	-	branched-chain amino acid transport permease protein
1445	 53.48	0	1231206..1231751	+	181	18313088	-	PAE2085	-	peroxiredoxin
1446	 55.70	0	1231673..1232137	-	154	18313089	-	PAE2087a	-	hypothetical protein
1447	 56.15	0	1232161..1232892	-	243	18313090	-	PAE2089	-	short chain dehydrogenase family protein
1448	 53.69	0	1232919..1233419	+	166	18313091	-	PAE2091	-	hypothetical protein
1449	 57.58	+1	1234087..1235175	-	362	18313092	-	PAE2095	-	hypothetical protein
1450	 51.00	0	1235212..1236060	+	282	18313093	-	PAE2096	-	solute-binding family 3 protein
1451	 52.12	0	1236092..1236256	+	54	18313094	rps14P	PAE2097	-	30S ribosomal protein S14P
1452	 47.33	0	1236291..1236683	+	130	18313095	rps8p	PAE2098	-	30S ribosomal protein S8P
1453	 51.42	0	1236716..1237174	+	152	18313096	rpl32e	PAE2099	-	50S ribosomal protein L32e
1454	 52.93	0	1237176..1237619	+	147	18313097	rpl19e	PAE2100	-	50S ribosomal protein L19e
1455	 51.46	0	1237621..1238238	+	205	18313098	rpl18p	PAE2101	-	50S ribosomal protein L18P
1456	 49.00	0	1238587..1238937	+	116	18313099	-	PAE2104	-	hypothetical protein
1457	 55.21	0	1239214..1239501	-	95	18313100	-	PAE2105	-	paREP2b
1458	 57.45	+1	1239626..1239766	+	46	18313101	-	PAE2106	-	paREP2a
1459	 51.55	0	1239797..1240054	+	85	18313102	-	PAE2108	-	paREP2a
1460	 51.61	0	1240114..1242471	+	785	18313103	-	PAE2109	-	DNA polymerase II
1461	 58.77	+1	1242523..1242636	-	37	18313104	-	PAE2110	-	hypothetical protein
1462	 51.52	0	1242694..1242858	+	54	18313105	-	PAE2111	-	paREP2a
1463	 47.84	0	1243025..1244251	-	408	18313106	-	PAE2112	-	DNA primase
1464	 52.17	0	1244477..1245352	+	291	18313107	-	PAE2116	-	methionine aminopeptidase
1465	 51.82	0	1245393..1247042	+	549	18313108	-	PAE2117	-	thermosome (chaperonin) alpha subunit
1466	 43.66	-1	1247039..1247590	-	183	18313109	-	PAE2118	-	hypothetical protein
1467	 45.93	-1	1247580..1248611	-	343	18313110	-	PAE2119	-	conjugal transfer protein, conjectural
1468	 43.75	-1	1248583..1249062	-	159	18313111	-	PAE2120	-	transcription initiation factor IIB, conjectural
1469	 42.22	-1	1249190..1249504	+	104	18313112	-	PAE2121	-	hypothetical protein
1470	 48.51	0	1249540..1249974	+	144	18313113	-	PAE2122	-	small nuclear ribonucleoprotein homolog (Sm-like)
1471	 52.62	0	1250204..1251043	-	279	18313114	-	PAE2125	-	paREP2a
1472	 50.26	0	1251033..1251410	-	125	18313115	-	PAE2127	-	paREP2a
1473	 56.85	+1	1251568..1252596	+	342	18313116	-	PAE2128	-	paREP2b
1474	 52.45	0	1252640..1255615	+	991	18313117	-	PAE2129	-	paREP2b
1475	 50.27	0	1255648..1258392	-	914	18313118	-	PAE2130	-	ATP-dependent helicase, putative
1476	 52.97	0	1258554..1259159	-	201	18313119	-	PAE2131	-	fumarate hydratase class I beta subunit
1477	 53.29	0	1259265..1260131	+	288	18313120	-	PAE2132	-	fumarate hydratase class I alpha subunit
1478	 51.23	0	1260123..1260284	-	53	18313121	-	PAE2133	-	hypothetical protein
1479	 54.37	0	1260314..1260736	+	140	18313122	-	PAE2134	-	hypothetical protein
1480	 45.74	-1	1260733..1261014	-	93	18313123	-	PAE2135	-	hypothetical protein
1481	 55.32	0	1261160..1261300	+	46	18313124	-	PAE2136	-	paREP2a
1482	 51.71	0	1261471..1261851	-	126	18313125	-	PAE2137	-	hypothetical protein
1483	 51.79	0	1261955..1262848	+	297	18313126	-	PAE2138	-	hypothetical protein
1484	 47.25	0	1263016..1263324	-	102	18313127	-	PAE2138a	-	hypothetical protein
1485	 38.98	-2	1263958..1264134	+	58	18313128	-	PAE2140	-	hypothetical protein
1486	 48.02	0	1264390..1264566	+	58	18313129	-	PAE2142	-	hypothetical protein
1487	 52.08	0	1264883..1265122	-	79	18313130	-	PAE2144	-	hypothetical protein
1488	 45.77	-1	1265393..1265593	-	66	18313131	-	PAE2146	-	hypothetical protein
1489	 41.77	-1	1265617..1266339	-	240	18313132	-	PAE2147	-	hypothetical protein
1490	 42.05	-1	1266345..1266539	-	64	18313133	-	PAE2148	-	hypothetical protein
1491	 42.42	-1	1266794..1267222	+	142	18313134	-	PAE2149	-	hypothetical protein
1492	 47.25	0	1267267..1268229	+	320	18313135	-	PAE2151	-	hypothetical protein
1493	 47.52	0	1268260..1268823	+	187	18313136	-	PAE2152	-	hypothetical protein
1494	 52.19	0	1268789..1269859	+	356	18313137	-	PAE2153	-	hypothetical protein
1495	 50.73	0	1269856..1271022	-	388	18313138	-	PAE2154	-	hypothetical protein
1496	 49.82	0	1271022..1272380	-	452	18313139	-	PAE2155	-	hypothetical protein
1497	 49.45	0	1272399..1273031	-	210	18313140	-	PAE2157	-	hypothetical protein
1498	 50.85	0	1273007..1273594	-	195	18313141	-	PAE2158	-	fuculose-1-phosphate aldolase (fucA)
1499	 52.42	0	1273630..1274991	-	453	18313142	-	PAE2159	-	hypothetical protein
1500	 53.98	0	1275024..1275701	-	225	18313143	-	PAE2160	-	hypothetical protein
1501	 48.10	0	1275730..1275966	-	78	18313144	-	PAE2161	-	hypothetical protein
1502	 48.76	0	1275987..1276388	-	133	18313145	-	PAE2162	-	Holliday junction resolvase
1503	 48.06	0	1276385..1276873	-	162	18313146	-	PAE2163	-	hypothetical protein
1504	 50.83	0	1276870..1277469	-	199	18313147	-	PAE2164	-	transcription factor
1505	 50.10	0	1277564..1279030	-	488	18313148	-	PAE2165	-	prolyl-tRNA synthetase
1506	 51.11	0	1279513..1280277	-	254	18313149	-	PAE2166	-	beta-aspartate methyltransferase (pimT), conjectural
1507	 53.50	0	1280300..1280785	-	161	18313150	-	PAE2167	-	hypothetical protein
1508	 46.13	-1	1281175..1281471	+	98	18313151	-	PAE2169	-	30S ribosomal protein S26e
1509	 54.55	0	1282069..1282431	+	120	18313152	-	PAE2171	-	paREP2b, degenerate
1510	 51.45	0	1282361..1282807	+	148	18313153	-	PAE2173	-	paREP2b, degenerate
1511	 48.44	0	1283354..1283770	+	138	18313154	-	PAE2175	-	hypothetical protein
1512	 51.57	0	1283807..1284349	+	180	18313155	-	PAE2176	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (pgsA)
1513	 43.72	-1	1284398..1284811	+	137	18313156	-	PAE2177	-	hypothetical protein
1514	 43.24	-1	1285314..1286585	+	423	18313157	-	PAE2179	-	hypothetical protein
1515	 44.94	-1	1286960..1289527	-	855	18313158	-	PAE2180	-	DNA polymerase I
1516	 41.36	-2	1289617..1290027	+	136	18313159	-	PAE2181	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.