IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
98	 48.90	0	77849..78304	+	151	18311741	-	PAE0142	-	paREP5a
99	 52.92	0	78314..78655	+	113	18311742	-	PAE0143	-	paREP5b
100	 56.34	0	78825..79163	-	112	18311743	-	PAE0144	-	hypothetical protein
101	 61.89	+2	79166..80065	-	299	18311744	-	PAE0146	-	hypothetical protein
102	 52.58	0	80100..81050	-	316	18311745	-	PAE0148	-	hypothetical protein
103	 50.69	0	81485..81628	+	47	18311746	-	PAE0150	-	hypothetical protein
104	 57.32	+1	81756..82151	-	131	18311747	-	PAE0151	-	hypothetical protein
105	 53.42	0	82135..82368	-	77	18311748	-	PAE0152	-	hypothetical protein
106	 53.29	0	82432..83343	-	303	18311749	-	PAE0153	-	hypothetical protein
107	 51.67	0	83334..83693	-	119	18311750	-	PAE0154	-	hypothetical protein
108	 56.94	+1	83923..84066	+	47	18311751	-	PAE0157	-	hypothetical protein
109	 57.43	+1	84063..84311	-	82	18311752	-	PAE0158	-	hypothetical protein
110	 55.56	0	84327..84497	-	56	18311753	-	PAE0160	-	hypothetical protein
111	 61.60	+2	84923..85396	+	157	18311754	-	PAE0163	-	mutT/nudix family protein
112	 55.77	0	85425..86489	+	354	18311755	-	PAE0164	-	tRNA-modifying enzyme
113	 43.06	-1	86646..86717	+	23	18311756	-	PAE0164a	-	hypothetical protein
114	 51.01	0	86727..87071	+	114	18311757	-	PAE0165	-	hypothetical protein
115	 56.99	+1	87061..87432	+	123	18311758	-	PAE0166	-	paREP11
116	 54.04	0	87429..87824	-	131	18311759	-	PAE0167	-	hypothetical protein
117	 53.18	0	87794..88186	-	130	18311760	-	PAE0168	-	hypothetical protein
118	 57.43	+1	88245..88883	+	212	18311761	-	PAE0170	-	hypothetical protein
119	 55.89	0	88870..89463	+	197	18311762	-	PAE0171	-	hypothetical protein
120	 57.54	+1	89519..90745	+	408	18311763	-	PAE0172	-	hypothetical protein
121	 53.99	0	90760..90972	-	70	18311764	-	PAE0173	-	ribosomal protein L24, conjectural
122	 58.14	+1	90956..91741	-	261	18311765	-	PAE0175	-	ribulose-1,5-biphosphate synthetase
123	 60.77	+1	91828..93081	+	417	18311766	-	PAE0176	-	metabolite transport protein
124	 56.46	0	93173..93466	+	97	18311767	-	PAE0178	-	hypothetical protein
125	 55.21	0	93587..94363	+	258	18311768	-	PAE0180	-	hypothetical protein
126	 64.51	+2	94405..95193	-	262	18311769	-	PAE0181	-	hypothetical protein
127	 58.12	+1	101069..101641	-	190	18311770	-	PAE0198	-	hypothetical protein
128	 51.09	0	101625..101900	-	91	18311771	-	PAE0199	-	hypothetical protein
129	 61.04	+1	101888..102775	-	295	18311772	-	PAE0200	-	hypothetical protein
130	 59.01	+1	102756..103604	-	282	18311773	-	PAE0201	-	hypothetical protein
131	 49.83	0	103683..104288	+	201	18311774	-	PAE0202	-	hypothetical protein
132	 44.04	-1	104858..105754	-	298	18311775	-	PAE0204	-	hypothetical protein
133	 51.15	0	105739..106782	-	347	18311776	-	PAE0205	-	hypothetical protein
134	 56.90	+1	106776..107543	-	255	18311777	-	PAE0207	-	hypothetical protein
135	 49.49	0	107626..109290	-	554	18311778	-	PAE0208	-	helicase,
136	 57.29	+1	109280..109972	-	230	18311779	-	PAE0209	-	hypothetical protein
137	 52.04	0	109969..110946	-	325	18311780	-	PAE0210	-	hypothetical protein
138	 54.37	0	110950..111372	-	140	18311781	-	PAE0211	-	hypothetical protein
139	 58.82	+1	111782..112546	+	254	18311782	-	PAE0212	-	hypothetical protein
140	 56.17	0	112713..113093	-	126	18311783	-	PAE0213	-	hypothetical protein
141	 55.97	0	113166..113483	-	105	18311784	-	PAE0214	-	hypothetical protein
142	 54.18	0	113621..114325	-	234	18311785	-	PAE0215	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
143	 58.00	+1	114440..115882	+	480	18311786	-	PAE0216	-	phosphoribosylamine--glycine ligase
144	 58.75	+1	115885..117021	+	378	18311787	-	PAE0218	-	amidophosphoribosyltransferase (purF)
145	 57.58	+1	117018..117842	+	274	18311788	-	PAE0219	-	phosphoribosylglycinamide formyltransferase
146	 53.85	0	117827..118762	+	311	18311789	-	PAE0220	-	methylenetetrahydrofolate dehydrogenase (folD)
147	 58.52	+1	118752..119684	+	310	18311790	-	PAE0221	-	phosphoribosylaminoimidazole synthetase
148	 61.35	+1	119681..120319	-	212	18311791	-	PAE0222	-	phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ)
149	 56.47	0	120316..120570	-	84	18311792	-	PAE0224	-	hypothetical protein
150	 60.36	+1	120715..122808	+	697	18311793	-	PAE0225	-	phosphoribosylformylglycinamidine synthase II
151	 62.23	+2	122811..124073	+	420	18311794	-	PAE0226	-	amidophosphoribosyltransferase (purF)
152	 60.31	+1	124112..124504	+	130	18311795	-	PAE0227	-	hypothetical protein
153	 64.04	+2	124738..124851	-	37	18311796	-	PAE0228	-	hypothetical protein
154	 64.60	+2	124986..125468	+	160	18311797	-	PAE0230	-	paREP8
155	 61.40	+1	125655..126794	-	379	18311798	-	PAE0232	-	phosphoribosylaminoimidazole carboxylase ATPase subunit (AIRC) (purK)
156	 57.58	+1	127002..127232	+	76	18311799	-	PAE0235	-	hypothetical protein
157	 61.50	+1	127222..127434	-	70	18311800	-	PAE0237	-	hypothetical protein
158	 58.50	+1	128019..128900	+	293	18311801	-	PAE0239	-	hypothetical protein
159	 56.50	0	128936..129112	+	58	18311802	-	PAE0240	-	hypothetical protein
160	 48.84	0	129407..133126	+	1239	18311803	-	PAE0242	-	hypothetical protein
161	 56.26	0	133123..134535	+	470	18311804	-	PAE0243	-	hypothetical protein
162	 50.36	0	134977..136785	-	602	18311805	-	PAE0245	-	hypothetical protein
163	 52.30	0	136775..137797	-	340	18311806	-	PAE0246	-	hypothetical protein
164	 50.69	0	138129..138272	-	47	18311807	-	PAE0247	-	hypothetical protein
165	 55.39	0	138506..139126	-	206	18311808	-	PAE0249	-	hypothetical protein
166	 57.26	+1	139466..139954	-	162	18311809	-	PAE0250	-	phosphoribosylaminoimidazole carboxylase catalytic subunit (AIRC) (purE)
167	 58.33	+1	140026..140457	-	143	18311810	-	PAE0252	-	diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (mutT/nudix family protein)
168	 52.65	0	140551..140814	+	87	18311811	-	PAE0253	-	hypothetical protein
169	 55.38	0	140805..141371	+	188	18311812	-	PAE0254	-	hypothetical protein
170	 47.99	0	141637..142059	-	140	18311813	-	PAE0256	-	hypothetical protein
171	 58.12	+1	142112..143281	-	389	18311814	-	PAE0257	-	tryptophan synthase subunit beta
172	 56.10	0	143521..144135	+	204	18311815	-	PAE0261	-	methylase, conjectural
173	 56.15	0	144159..145166	+	335	18311816	-	PAE0262	-	prohibitin protein
174	 54.28	0	145163..145501	+	112	18311817	-	PAE0263	-	hypothetical protein
175	 52.73	0	145542..146108	+	188	18311818	-	PAE0264	-	signal peptidase
176	 54.44	0	146662..147021	+	119	18311819	-	PAE0265	-	hypothetical protein
177	 52.79	0	147290..147880	+	196	18311820	-	PAE0267	-	intracellular protease
178	 48.19	0	148029..148304	-	91	18311821	-	PAE0268	-	hypothetical protein
179	 55.45	0	148392..149345	+	317	18311822	-	PAE0269	-	ABC-2 type transport system ATP-binding protein
180	 53.07	0	149342..150106	+	254	18311823	-	PAE0270	-	membrane protein
181	 49.83	0	150134..150424	+	96	18311824	-	PAE0272	-	Rieske iron sulfur protein, putative
182	 53.52	0	150417..151154	-	245	18311825	-	PAE0273	-	hypothetical protein
183	 51.89	0	151221..151856	+	211	18311826	-	PAE0274	-	superoxide dismutase (sod)
184	 58.08	+1	151862..152734	-	290	18311827	-	PAE0275	-	hypothetical protein
185	 54.37	0	152782..153204	+	140	18311828	-	PAE0276	-	hypothetical protein
186	 51.65	0	153585..155069	-	494	18311829	-	PAE0278	-	hypothetical protein
187	 42.52	-1	155066..156349	-	427	18311830	-	PAE0279	-	hypothetical protein
188	 53.78	0	156806..157387	-	193	18311831	-	PAE0280	-	hypothetical protein
189	 52.54	0	157359..159680	-	773	18311832	-	PAE0282	-	hypothetical protein
190	 56.10	0	160080..160505	-	141	18311833	-	PAE0284	-	hypothetical protein
191	 51.40	0	160575..160967	-	130	18311834	-	PAE0285	-	hypothetical protein
192	 51.52	0	160952..161050	-	32	18311835	-	PAE0286	-	paREP2b
193	 39.39	-2	161995..162159	-	54	18311836	-	PAE0288	-	hypothetical protein
194	 43.98	-1	162146..163159	-	337	18311837	-	PAE0289	-	metallo cofactor biosynthesis protein, conjectural
195	 41.09	-2	163159..163416	-	85	18311838	-	PAE0290	-	hypothetical protein
196	 41.05	-2	163413..163982	-	189	18311839	-	PAE0292	-	hypothetical protein
197	 46.46	-1	164013..164492	+	159	18311840	-	PAE0293	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.