IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1331	 55.45	0	1135208..1136152	-	314	18312974	-	PAE1927	-	transketolase (C terminal section)
1332	 55.72	0	1136146..1136949	-	267	18312975	-	PAE1929	-	transketolase (N terminal section)
1333	 53.94	0	1137050..1138000	+	316	18312976	-	PAE1931	-	tyrosyl-tRNA synthetase
1334	 54.10	0	1138021..1139007	+	328	161485621	-	PAE1932	-	3-deoxy-7-phosphoheptulonate synthase
1335	 56.79	+1	1139004..1139570	-	188	18312978	-	PAE1934	-	hypothetical protein
1336	 55.57	0	1139552..1141723	-	723	18312979	-	PAE1935	-	carbon monoxide dehydrogenase large subunit, conjectural
1337	 51.35	0	1141720..1142163	-	147	18312980	-	PAE1936	-	carbon monoxide dehydrogenase small subunit, conjectural
1338	 59.46	+1	1142160..1142978	-	272	18312981	-	PAE1939	-	carbon monoxide dehydrogenase medium subunit, conjectural
1339	 57.85	+1	1143009..1143791	-	260	18312982	-	PAE1941	-	chorismate mutase, conjectural
1340	 52.06	0	1143859..1144392	-	177	18312983	-	PAE1943	-	paREP5
1341	 60.40	+1	1144439..1144933	-	164	18312984	-	PAE1944	-	hypothetical protein
1342	 54.29	0	1144930..1147167	-	745	18312985	-	PAE1946	-	hypothetical protein
1343	 60.12	+1	1147164..1147835	-	223	18312986	-	PAE1948	-	hypothetical protein
1344	 56.59	+1	1147898..1148155	-	85	18312987	-	PAE1949	-	paREP11
1345	 52.84	0	1148269..1148673	-	134	18312988	-	PAE1951	-	hypothetical protein
1346	 58.95	+1	1148686..1149048	-	120	18312989	-	PAE1954	-	hypothetical protein
1347	 57.21	+1	1149050..1149451	-	133	18312990	-	PAE1955	-	hypothetical protein
1348	 57.38	+1	1149483..1150721	-	412	18312991	-	PAE1956	-	hypothetical protein
1349	 48.28	0	1150721..1151329	-	202	18312992	-	PAE1957	-	hypothetical protein
1350	 56.08	0	1151396..1151905	+	169	18312993	-	PAE1958	-	hypothetical protein
1351	 59.71	+1	1151969..1152874	-	301	18312994	-	PAE1960	-	3-dehydroquinate dehydratase/chorismate mutase
1352	 56.83	+1	1152886..1153749	-	287	18312995	-	PAE1962	-	hypothetical protein
1353	 58.71	+1	1153763..1154755	+	330	18312996	-	PAE1964	-	aspartate aminotransferase (aspC), conjectural
1354	 53.85	0	1154773..1154850	-	25	18312997	-	PAE1966a	-	hypothetical protein
1355	 56.74	+1	1155217..1156032	+	271	18312998	-	PAE1967	-	shikimate kinase
1356	 54.50	0	1156011..1158065	-	684	18312999	-	PAE1968	-	alpha-glucosidase
1357	 49.68	0	1158084..1158395	-	103	18313000	-	PAE1969	-	hypothetical protein
1358	 53.98	0	1158466..1159482	+	338	18313001	rpl3p	PAE1970	-	50S ribosomal protein L3P
1359	 54.11	0	1159502..1160353	+	283	18313002	rpl4lp	PAE1971	-	50S ribosomal protein L4P
1360	 42.68	-1	1160350..1160595	+	81	18313003	-	PAE1972	-	ribosomal protein L23
1361	 51.24	0	1161311..1161673	-	120	18313004	-	PAE1974	-	hypothetical protein
1362	 54.75	0	1161704..1162240	-	178	18313005	-	PAE1975	-	hypothetical protein
1363	 51.74	0	1162297..1162899	+	200	18313006	-	PAE1976	-	hypothetical protein
1364	 41.94	-1	1163002..1163280	+	92	18313007	-	PAE1978	-	DNA-directed RNA polymerase subunit L (rpoL)
1365	 55.11	0	1163277..1163942	+	221	18313008	-	PAE1979	-	ribosome biogenesis protein
1366	 49.33	0	1163939..1164688	+	249	18313009	-	PAE1981	-	hypothetical protein
1367	 43.43	-1	1164729..1165253	+	174	18313010	-	PAE1982	-	aerolysin, part 1, authentic frameshift
1368	 55.04	0	1165246..1165890	+	214	18313011	-	PAE1983	-	aerolysin, part 2, authentic frameshift
1369	 54.49	0	1165919..1167166	+	415	18313012	-	PAE1984	-	3-isopropylmalate dehydratase large subunit
1370	 53.05	0	1167176..1168093	-	305	18313013	-	PAE1985	-	ornithine carbamoyltransferase
1371	 48.43	0	1168139..1169476	-	445	18313014	-	PAE1986	-	2-isopropylmalate synthase
1372	 54.08	0	1169631..1171418	+	595	18313015	-	PAE1989	-	hypothetical protein
1373	 47.65	0	1171408..1171875	+	155	18313016	-	PAE1990	-	archaemetzincin-like protein
1374	 53.09	0	1171858..1172343	-	161	18313017	leuD	PAE1991	-	3-isopropylmalate dehydratase small subunit
1375	 51.23	0	1172492..1173586	+	364	18313018	-	PAE1993	-	trans-homoaconitate synthase
1376	 52.12	0	1173680..1174552	+	290	18313019	-	PAE1995	-	3-isopropylmalate dehydrogenase (leuB)
1377	 53.12	0	1174606..1175853	+	415	18313020	-	PAE1996	-	glutamate dehydrogenase
1378	 43.00	-1	1175850..1176056	-	68	18313021	-	PAE1998	-	hypothetical protein
1379	 45.55	-1	1176079..1176471	-	130	18313022	-	PAE1999	-	hypothetical protein
1380	 48.26	0	1176530..1177219	+	229	18313023	-	PAE2000	-	glutamine transport system permease protein, putative
1381	 50.34	0	1177222..1177956	+	244	18313024	-	PAE2001	-	glutamine transport ATP-binding
1382	 54.78	0	1177979..1179838	+	619	18313025	-	PAE2002	-	molybdopterin oxidoreductase
1383	 51.63	0	1179866..1180570	+	234	18313026	-	PAE2003	-	hypothetical protein
1384	 56.31	0	1180558..1181397	+	279	18313027	-	PAE2004	-	serine/threonine specific protein phosphatase
1385	 51.86	0	1181623..1183776	+	717	18313028	-	PAE2005	-	hypothetical protein
1386	 49.21	0	1183777..1184349	+	190	18313029	-	PAE2006	-	hypothetical protein
1387	 52.17	0	1184387..1184917	-	176	18313030	dcd	PAE2008	-	deoxycytidine triphosphate deaminase
1388	 53.06	0	1185010..1185516	+	168	18313031	-	PAE2010	-	hypothetical protein
1389	 53.48	0	1185513..1185785	-	90	18313032	-	PAE2011	-	hypothetical protein
1390	 54.59	0	1185828..1186274	+	148	18313033	-	PAE2012	-	methylated-DNA--[protein]-cysteine S-methyltransferase (ogt)
1391	 54.82	0	1186311..1186538	+	75	18313034	-	PAE2013	-	ferredoxin
1392	 47.78	0	1186735..1186914	+	59	18313035	-	PAE2015	-	hypothetical protein
1393	 52.23	0	1186946..1187596	+	216	18313036	-	PAE2017	-	phosphoserine phosphatase (serB)
1394	 48.10	0	1187678..1188571	+	297	18313037	-	PAE2019	-	hypothetical protein
1395	 52.62	0	1188556..1189260	+	234	18313038	-	PAE2020	-	hypothetical protein
1396	 51.85	0	1189498..1189956	-	152	18313039	-	PAE2021	-	riboflavin synthase
1397	 50.41	0	1190002..1190370	+	122	18313040	-	PAE2022	-	CopG family protein
1398	 55.56	0	1190373..1190741	+	122	18313041	-	PAE2024	-	hypothetical protein
1399	 55.66	0	1190738..1191709	+	323	18313042	-	PAE2025	-	xaa-Pro dipeptidase, putative
1400	 64.29	+2	1191710..1192045	-	111	18313043	-	PAE2027	-	paREP10, authentic frameshift
1401	 54.35	0	1192251..1193801	-	516	18313044	-	PAE2028	-	N-methylhydantoinase B (hyuB)
1402	 57.00	+1	1193798..1195741	-	647	18313045	-	PAE2030	-	N-methylhydantoinase A (hyuA)
1403	 39.14	-2	1195907..1196233	+	108	18313046	-	PAE2031	-	hypothetical protein
1404	 47.06	0	1196417..1196824	-	135	18313047	-	PAE2032	-	paREP11
1405	 52.92	0	1196978..1197217	-	79	18313048	-	PAE2034	-	hypothetical protein
1406	 53.93	0	1197484..1198818	+	444	18313049	-	PAE2035	-	D-lactate dehydrogenase
1407	 58.54	+1	1198796..1199275	-	159	18313050	-	PAE2037	-	hypothetical protein
1408	 57.88	+1	1199272..1200204	-	310	18313051	-	PAE2038	-	hypothetical protein
1409	 54.08	0	1200242..1201147	+	301	18313052	-	PAE2039	-	moxR related protein
1410	 57.27	+1	1201144..1202058	-	304	18313053	-	PAE2040	-	hypothetical protein
1411	 61.40	+1	1202055..1203536	-	493	18313054	-	PAE2041	-	hypothetical protein
1412	 53.72	0	1203865..1204227	-	120	18313055	-	PAE2042	-	hypothetical protein
1413	 58.59	+1	1204270..1205445	-	391	18313056	-	PAE2044	-	hypothetical protein
1414	 59.18	+1	1205442..1205735	-	97	18313057	-	PAE2046	-	hypothetical protein
1415	 48.00	0	1205934..1206935	+	333	18313058	-	PAE2048	-	hypothetical protein
1416	 60.49	+1	1207186..1208043	+	285	18313059	-	PAE2050	-	hypothetical protein
1417	 37.60	-2	1208872..1209948	-	358	18313060	-	PAE2051	-	alcohol dehydrogenase (Zinc)
1418	 57.74	+1	1210031..1211833	+	600	18313061	-	PAE2052	-	aldehyde ferredoxin oxidoreductase (aor)
1419	 57.61	+1	1211822..1213036	-	404	18313062	-	PAE2053	-	pleiotropic regulatory protein, conjectural
1420	 56.39	0	1213066..1213503	+	145	18313063	-	PAE2054	-	hypothetical protein
1421	 49.61	0	1213500..1213886	-	128	18313064	-	PAE2055	-	hypothetical protein
1422	 52.11	0	1213966..1214178	+	70	18313065	-	PAE2056	-	hypothetical protein
1423	 50.45	0	1214179..1214289	-	36	18313066	-	PAE2057	-	paREP6 part 2, authentic frameshift
1424	 54.32	0	1214311..1214391	-	26	18313067	-	PAE2057a	-	paREP6 part 1, authentic frameshift
1425	 57.64	+1	1214438..1214980	+	180	18313068	-	PAE2058	-	hypothetical protein
1426	 59.41	+1	1214918..1216144	-	408	18313069	-	PAE2059	-	hypothetical protein
1427	 55.51	0	1216201..1217016	-	271	18313070	-	PAE2060	-	hypothetical protein
1428	 61.75	+2	1217017..1217382	-	121	18313071	-	PAE2062	-	hypothetical protein
1429	 58.28	+1	1217956..1218432	-	158	18313072	-	PAE2063	-	paREP2b
1430	 58.97	+1	1218466..1218582	-	38	18313073	-	PAE2066	-	paREP2b
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.