IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1254	 50.00	0	1065347..1065442	-	31	18312897	-	PAE1810	-	paREP2a
1255	 57.50	+1	1065641..1065760	+	39	18312898	-	PAE1811	-	paREP2b
1256	 53.89	0	1065829..1067253	+	474	18312899	-	PAE1813	-	ABC transporter subunit, putative
1257	 47.06	0	1067305..1067508	+	67	18312900	-	PAE1814	-	hypothetical protein
1258	 55.22	0	1067810..1068403	+	197	18312901	-	PAE1815	-	hypothetical protein
1259	 50.57	0	1068564..1070129	+	521	18312902	-	PAE1816	-	hypothetical protein
1260	 57.11	+1	1070265..1071164	+	299	18312903	-	PAE1818	-	ribosomal protein S6 modification protein (rimK)
1261	 45.77	-1	1071252..1072682	+	476	18312904	-	PAE1819	-	hypothetical protein
1262	 53.04	0	1072651..1073472	+	273	18312905	-	PAE1820	-	hypothetical protein
1263	 60.45	+1	1073733..1073909	-	58	18312906	-	PAE1823	-	hypothetical protein
1264	 54.33	0	1074027..1074869	-	280	18312907	-	PAE1824	-	hypothetical protein
1265	 46.77	0	1074889..1075476	-	195	18312908	-	PAE1825	-	hypothetical protein
1266	 48.02	0	1075466..1075894	-	142	18312909	-	PAE1826	-	hypothetical protein
1267	 53.38	0	1076402..1077628	+	408	18312910	-	PAE1827	-	paREP12
1268	 59.84	+1	1077809..1078321	+	170	18312911	-	PAE1828	-	paREP13
1269	 53.66	0	1078266..1078511	-	81	18312912	-	PAE1829	-	hypothetical protein
1270	 54.05	0	1078546..1079076	-	176	18312913	-	PAE1830	-	hypothetical protein
1271	 50.14	0	1079060..1079410	-	116	18312914	-	PAE1832	-	hypothetical protein
1272	 52.26	0	1079479..1080054	+	191	18312915	-	PAE1833	-	50S ribosomal protein L15e
1273	 53.66	0	1080153..1081013	-	286	18312916	-	PAE1836	-	hypothetical protein
1274	 61.09	+1	1081006..1081740	-	244	18312917	-	PAE1837	-	hypothetical protein
1275	 57.95	+1	1081846..1083360	+	504	18312918	-	PAE1839	-	glycosyl transferase, putative
1276	 56.52	0	1083329..1084777	-	482	18312919	-	PAE1840	-	lysyl-tRNA synthetase
1277	 57.53	+1	1084806..1085768	-	320	18312920	-	PAE1841	-	hypothetical protein
1278	 63.68	+2	1085796..1086431	-	211	18312921	-	PAE1842	-	hypothetical protein
1279	 62.25	+2	1086452..1087879	-	475	18312922	-	PAE1844	-	hypothetical protein
1280	 57.33	+1	1088079..1088978	-	299	18312923	-	PAE1846	-	hypothetical protein
1281	 54.04	0	1089001..1089396	-	131	18312924	-	PAE1848	-	hypothetical protein
1282	 44.09	-1	1090039..1090698	+	219	18312925	-	PAE1850	-	rRNA intron-encoded homing endonuclease
1283	 55.59	0	1095290..1098232	+	980	18312926	-	PAE1856	-	hypothetical protein
1284	 51.50	0	1098229..1099263	+	344	18312927	-	PAE1857	-	hypothetical protein
1285	 49.66	0	1099235..1100269	+	344	18312928	-	PAE1858	-	hypothetical protein
1286	 55.25	0	1100615..1101385	-	256	18312929	-	PAE1861	-	ankyrin repeat-containing protein
1287	 55.80	0	1101537..1102640	+	367	18312930	-	PAE1862	-	hypothetical protein
1288	 47.38	0	1102654..1103301	+	215	18312931	-	PAE1863	-	hypothetical protein
1289	 52.46	0	1103588..1103932	+	114	18312932	-	PAE1864	-	paREP7
1290	 54.42	0	1103829..1104122	+	97	18312933	-	PAE1865	-	paREP7
1291	 55.56	0	1104153..1104314	+	53	18312934	-	PAE1867	-	paREP7
1292	 44.05	-1	1104840..1105259	-	139	18312935	-	PAE1869	-	paREP11
1293	 48.51	0	1105246..1105647	-	133	18312936	-	PAE1870	-	hypothetical protein
1294	 47.81	0	1106809..1107858	+	349	18312937	-	PAE1872	-	isocitrate lyase
1295	 45.45	-1	1107855..1108283	+	142	18312938	-	PAE1873	-	hypothetical protein
1296	 55.33	0	1108295..1108735	+	146	18312939	-	PAE1875	-	paREP7
1297	 52.71	0	1108868..1109605	+	245	18312940	-	PAE1876	-	hypothetical protein
1298	 55.16	0	1109800..1110477	+	225	18312941	-	PAE1878	-	ATP binding protein, degenerate
1299	 54.70	0	1111447..1111914	+	155	18312942	-	PAE1882	-	hypothetical protein
1300	 55.04	0	1111939..1112643	-	234	18312943	-	PAE1883	-	hypothetical protein
1301	 53.11	0	1112828..1113727	-	299	18312944	-	PAE1884	-	phosphate permease, conjectural
1302	 50.14	0	1114128..1115561	-	477	18312945	-	PAE1888	-	multicopper oxidase
1303	 50.00	0	1115856..1116137	+	93	18312946	-	PAE1890	-	paREP6
1304	 54.86	0	1116137..1116712	+	191	18312947	-	PAE1891	-	hypothetical protein
1305	 48.57	0	1116660..1116869	+	69	18312948	-	PAE1892	-	paREP6
1306	 57.04	+1	1117002..1117406	-	134	18312949	-	PAE1893	-	hypothetical protein
1307	 55.04	0	1117375..1117761	-	128	18312950	-	PAE1894	-	hypothetical protein
1308	 56.06	0	1118721..1119116	+	131	18312951	-	PAE1895	-	hypothetical protein
1309	 54.47	0	1119201..1119815	+	204	18312952	-	PAE1897	-	hypothetical protein
1310	 57.47	+1	1120067..1120240	+	57	18312953	-	PAE1899	-	hypothetical protein
1311	 58.75	+1	1120327..1121412	+	361	18312954	-	PAE1900	-	paREP2b
1312	 61.25	+1	1121422..1121901	-	159	18312955	-	PAE1901	-	paREP8
1313	 51.54	0	1121999..1122388	+	129	18312956	-	PAE1902	-	hypothetical protein
1314	 58.48	+1	1122364..1122705	+	113	18312957	-	PAE1903	-	hypothetical protein
1315	 54.79	0	1122765..1123244	-	159	18312958	-	PAE1905	-	hypothetical protein
1316	 51.31	0	1123244..1123510	-	88	18312959	-	PAE1906	-	hypothetical protein
1317	 51.69	0	1123555..1123761	-	68	18312960	-	PAE1907	-	hypothetical protein
1318	 52.54	0	1123808..1124260	+	150	18312961	-	PAE1909	-	hypothetical protein
1319	 54.61	0	1124285..1124956	+	223	18312962	-	PAE1910	-	hypothetical protein
1320	 57.45	+1	1124995..1126101	-	368	18312963	-	PAE1912	-	chorismate synthase
1321	 55.89	0	1126098..1126886	-	262	18312964	-	PAE1913	-	shikimate 5-dehydrogenase (aroE)
1322	 48.75	0	1127000..1127557	+	185	18312965	-	PAE1915	-	hypothetical protein
1323	 52.62	0	1127679..1128632	+	317	18312966	-	PAE1916	-	hypothetical protein
1324	 54.39	0	1128676..1129392	+	238	18312967	-	PAE1917	-	pyrroline-5-carboxylate reductase
1325	 54.01	0	1129375..1129785	-	136	18312968	-	PAE1918	-	mutT/nudix family protein
1326	 51.52	0	1129833..1130948	+	371	18312969	-	PAE1920	-	phoH like protein
1327	 54.38	0	1130976..1131968	+	330	18312970	-	PAE1921	-	putative alcohol dehydrogenase
1328	 49.74	0	1132026..1132970	-	314	18312971	-	PAE1922	-	UDP-glucose 4-epimerase (galE-1)
1329	 55.11	0	1133000..1134202	-	400	18312972	-	PAE1924	-	3-phosphoshikimate 1-carboxyvinyltransferase (aroA)
1330	 55.59	0	1134174..1135211	-	345	18312973	aroB	PAE1926	-	3-dehydroquinate synthase
1331	 55.45	0	1135208..1136152	-	314	18312974	-	PAE1927	-	transketolase (C terminal section)
1332	 55.72	0	1136146..1136949	-	267	18312975	-	PAE1929	-	transketolase (N terminal section)
1333	 53.94	0	1137050..1138000	+	316	18312976	-	PAE1931	-	tyrosyl-tRNA synthetase
1334	 54.10	0	1138021..1139007	+	328	161485621	-	PAE1932	-	3-deoxy-7-phosphoheptulonate synthase
1335	 56.79	+1	1139004..1139570	-	188	18312978	-	PAE1934	-	hypothetical protein
1336	 55.57	0	1139552..1141723	-	723	18312979	-	PAE1935	-	carbon monoxide dehydrogenase large subunit, conjectural
1337	 51.35	0	1141720..1142163	-	147	18312980	-	PAE1936	-	carbon monoxide dehydrogenase small subunit, conjectural
1338	 59.46	+1	1142160..1142978	-	272	18312981	-	PAE1939	-	carbon monoxide dehydrogenase medium subunit, conjectural
1339	 57.85	+1	1143009..1143791	-	260	18312982	-	PAE1941	-	chorismate mutase, conjectural
1340	 52.06	0	1143859..1144392	-	177	18312983	-	PAE1943	-	paREP5
1341	 60.40	+1	1144439..1144933	-	164	18312984	-	PAE1944	-	hypothetical protein
1342	 54.29	0	1144930..1147167	-	745	18312985	-	PAE1946	-	hypothetical protein
1343	 60.12	+1	1147164..1147835	-	223	18312986	-	PAE1948	-	hypothetical protein
1344	 56.59	+1	1147898..1148155	-	85	18312987	-	PAE1949	-	paREP11
1345	 52.84	0	1148269..1148673	-	134	18312988	-	PAE1951	-	hypothetical protein
1346	 58.95	+1	1148686..1149048	-	120	18312989	-	PAE1954	-	hypothetical protein
1347	 57.21	+1	1149050..1149451	-	133	18312990	-	PAE1955	-	hypothetical protein
1348	 57.38	+1	1149483..1150721	-	412	18312991	-	PAE1956	-	hypothetical protein
1349	 48.28	0	1150721..1151329	-	202	18312992	-	PAE1957	-	hypothetical protein
1350	 56.08	0	1151396..1151905	+	169	18312993	-	PAE1958	-	hypothetical protein
1351	 59.71	+1	1151969..1152874	-	301	18312994	-	PAE1960	-	3-dehydroquinate dehydratase/chorismate mutase
1352	 56.83	+1	1152886..1153749	-	287	18312995	-	PAE1962	-	hypothetical protein
1353	 58.71	+1	1153763..1154755	+	330	18312996	-	PAE1964	-	aspartate aminotransferase (aspC), conjectural
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.