IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.51 STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1194	 48.31	0	1012246..1013073	-	275	18312837	-	PAE1727	-	protease, conjectural
1195	 48.64	0	1013189..1013665	+	158	18312838	rps19p	PAE1729	-	30S ribosomal protein S19P
1196	 52.46	0	1013742..1014107	+	121	161485622	rps17p	PAE1730	-	30S ribosomal protein S17P
1197	 56.61	+1	1014119..1014307	-	62	18312840	-	PAE1731	-	paREP2a
1198	 52.38	0	1014320..1014403	-	27	18312841	-	PAE1733	-	paREP2a
1199	 53.04	0	1014403..1016325	+	640	18312842	-	PAE1734	-	paREP2b
1200	 49.92	0	1016329..1016979	+	216	18312843	-	PAE1735	-	hypothetical protein
1201	 46.61	0	1017035..1018066	-	343	18312844	-	PAE1736	-	beta-glucosidase
1202	 53.52	0	1018206..1018631	-	141	18312845	-	PAE1738	-	hypothetical protein
1203	 50.53	0	1018624..1019658	-	344	18312846	-	PAE1740	-	glyceraldehyde-3-phosphate dehydrogenase
1204	 47.92	0	1019655..1020881	-	408	18312847	-	PAE1742	-	phosphoglycerate kinase
1205	 44.78	-1	1020969..1021562	+	197	18312848	-	PAE1744	-	hypothetical protein
1206	 48.60	0	1021646..1023472	+	608	18312849	-	PAE1748	-	threonyl-tRNA synthetase
1207	 46.72	0	1023534..1023914	+	126	18312850	-	PAE1749	-	S-adenosylmethionine decarboxylase proenzyme
1208	 47.76	0	1024073..1024987	+	304	18312851	-	PAE1752	-	hypothetical protein
1209	 50.30	0	1025513..1026019	-	168	18312852	-	PAE1755	-	hypothetical protein
1210	 51.57	0	1026027..1028252	-	741	18312853	-	PAE1756	-	hypothetical protein
1211	 57.33	+1	1028505..1028954	-	149	18312854	-	PAE1759	-	molybdopterin-guanine dinucleotide biosynthesis protein B, conjectural
1212	 50.83	0	1028951..1029253	-	100	18312855	-	PAE1760	-	hypothetical protein
1213	 55.78	0	1029250..1030305	-	351	18312856	-	PAE1761	-	myo-inositol-1-phosphate synthase, conjectural
1214	 48.04	0	1030363..1031967	-	534	18312857	-	PAE1762	-	iron-sulfur binding reductase,
1215	 43.26	-1	1032167..1032811	-	214	18312858	-	PAE1763	-	hypothetical protein
1216	 53.54	0	1032792..1034345	-	517	18312859	-	PAE1764	-	GTP-binding protein
1217	 39.22	-2	1034552..1034653	-	33	18312860	-	PAE1765	-	hypothetical protein
1218	 55.28	0	1034650..1034772	-	40	18312861	-	PAE1765a	-	paREP2a
1219	 57.14	+1	1034745..1034996	-	83	18312862	-	PAE1766	-	paREP2a
1220	 53.44	0	1034986..1035363	-	125	18312863	-	PAE1768	-	paREP2a
1221	 51.48	0	1035524..1038262	+	912	18312864	-	PAE1770	-	paREP2b
1222	 51.89	0	1038248..1040413	-	721	18312865	hppA	PAE1771	-	membrane-bound proton-translocating pyrophosphatase
1223	 54.46	0	1040512..1040724	+	70	18312866	-	PAE1772	-	paREP2a
1224	 51.22	0	1040828..1043131	+	767	18312867	-	PAE1773	-	H+-transporting ATP synthase subunit I (atpI), conjectural
1225	 54.32	0	1043131..1043802	+	223	18312868	-	PAE1774	-	hypothetical protein
1226	 49.07	0	1043842..1044756	+	304	18312869	-	PAE1775	-	hypothetical protein
1227	 54.52	0	1044710..1045063	-	117	18312870	-	PAE1775a	-	hypothetical protein
1228	 47.74	0	1045066..1045308	-	80	18312871	-	PAE1777	-	hypothetical protein
1229	 49.12	0	1045308..1045535	-	75	18312872	-	PAE1778	-	ribosomal protein L29
1230	 47.88	0	1045574..1046164	-	196	18312873	rps3p	PAE1779	-	30S ribosomal protein S3P
1231	 50.50	0	1046196..1046999	-	267	18312874	-	PAE1780	-	protein part 2, authentic frameshift
1232	 50.17	0	1046951..1047247	-	98	18312875	-	PAE1780a	-	protein part 1, authentic frameshift
1233	 51.87	0	1047613..1048119	-	168	18312876	rpl22p	PAE1782	-	50S ribosomal protein L22P
1234	 51.99	0	1048219..1049547	-	442	18312877	-	PAE1783	-	hypothetical protein
1235	 59.21	+1	1049618..1050448	+	276	18312878	-	PAE1784	-	hypothetical protein
1236	 54.82	0	1050430..1051113	+	227	18312879	-	PAE1785	-	hypothetical protein
1237	 52.04	0	1051110..1051574	-	154	18312880	-	PAE1786	-	hypothetical protein
1238	 45.74	-1	1051627..1052472	-	281	18312881	-	PAE1788	-	hypothetical protein
1239	 52.36	0	1052911..1054245	+	444	18312882	-	PAE1789	-	hypothetical protein
1240	 54.76	0	1054268..1054477	+	69	18312883	-	PAE1790	-	hypothetical protein
1241	 60.94	+1	1054486..1055061	-	191	18312884	-	PAE1792	-	hypothetical protein
1242	 51.71	0	1055844..1056224	-	126	18312885	-	PAE1796	-	hypothetical protein
1243	 49.93	0	1056268..1057020	+	250	18312886	-	PAE1797	-	hypothetical protein
1244	 42.67	-1	1057217..1057441	+	74	18312887	-	PAE1798	-	hypothetical protein
1245	 55.98	0	1057424..1058770	-	448	18312888	-	PAE1799	-	4-aminobutyrate aminotransferase
1246	 52.61	0	1059666..1061771	+	701	18312889	-	PAE1802	-	hypothetical protein
1247	 55.40	0	1061749..1062387	+	212	18312890	-	PAE1803	-	hypothetical protein
1248	 48.61	0	1062448..1062879	+	143	18312891	-	PAE1803a	-	hypothetical protein
1249	 50.32	0	1062882..1063499	+	205	18312892	-	PAE1804	-	hypothetical protein
1250	 48.37	0	1063500..1063745	+	81	18312893	-	PAE1805	-	hypothetical protein
1251	 56.74	+1	1064077..1064358	-	93	18312894	-	PAE1807	-	hypothetical protein
1252	 51.62	0	1064398..1065168	-	256	18312895	-	PAE1808	-	ABC transporter, putative
1253	 52.38	0	1065212..1065295	-	27	18312896	-	PAE1809a	-	paREP2a
1254	 50.00	0	1065347..1065442	-	31	18312897	-	PAE1810	-	paREP2a
1255	 57.50	+1	1065641..1065760	+	39	18312898	-	PAE1811	-	paREP2b
1256	 53.89	0	1065829..1067253	+	474	18312899	-	PAE1813	-	ABC transporter subunit, putative
1257	 47.06	0	1067305..1067508	+	67	18312900	-	PAE1814	-	hypothetical protein
1258	 55.22	0	1067810..1068403	+	197	18312901	-	PAE1815	-	hypothetical protein
1259	 50.57	0	1068564..1070129	+	521	18312902	-	PAE1816	-	hypothetical protein
1260	 57.11	+1	1070265..1071164	+	299	18312903	-	PAE1818	-	ribosomal protein S6 modification protein (rimK)
1261	 45.77	-1	1071252..1072682	+	476	18312904	-	PAE1819	-	hypothetical protein
1262	 53.04	0	1072651..1073472	+	273	18312905	-	PAE1820	-	hypothetical protein
1263	 60.45	+1	1073733..1073909	-	58	18312906	-	PAE1823	-	hypothetical protein
1264	 54.33	0	1074027..1074869	-	280	18312907	-	PAE1824	-	hypothetical protein
1265	 46.77	0	1074889..1075476	-	195	18312908	-	PAE1825	-	hypothetical protein
1266	 48.02	0	1075466..1075894	-	142	18312909	-	PAE1826	-	hypothetical protein
1267	 53.38	0	1076402..1077628	+	408	18312910	-	PAE1827	-	paREP12
1268	 59.84	+1	1077809..1078321	+	170	18312911	-	PAE1828	-	paREP13
1269	 53.66	0	1078266..1078511	-	81	18312912	-	PAE1829	-	hypothetical protein
1270	 54.05	0	1078546..1079076	-	176	18312913	-	PAE1830	-	hypothetical protein
1271	 50.14	0	1079060..1079410	-	116	18312914	-	PAE1832	-	hypothetical protein
1272	 52.26	0	1079479..1080054	+	191	18312915	-	PAE1833	-	50S ribosomal protein L15e
1273	 53.66	0	1080153..1081013	-	286	18312916	-	PAE1836	-	hypothetical protein
1274	 61.09	+1	1081006..1081740	-	244	18312917	-	PAE1837	-	hypothetical protein
1275	 57.95	+1	1081846..1083360	+	504	18312918	-	PAE1839	-	glycosyl transferase, putative
1276	 56.52	0	1083329..1084777	-	482	18312919	-	PAE1840	-	lysyl-tRNA synthetase
1277	 57.53	+1	1084806..1085768	-	320	18312920	-	PAE1841	-	hypothetical protein
1278	 63.68	+2	1085796..1086431	-	211	18312921	-	PAE1842	-	hypothetical protein
1279	 62.25	+2	1086452..1087879	-	475	18312922	-	PAE1844	-	hypothetical protein
1280	 57.33	+1	1088079..1088978	-	299	18312923	-	PAE1846	-	hypothetical protein
1281	 54.04	0	1089001..1089396	-	131	18312924	-	PAE1848	-	hypothetical protein
1282	 44.09	-1	1090039..1090698	+	219	18312925	-	PAE1850	-	rRNA intron-encoded homing endonuclease
1283	 55.59	0	1095290..1098232	+	980	18312926	-	PAE1856	-	hypothetical protein
1284	 51.50	0	1098229..1099263	+	344	18312927	-	PAE1857	-	hypothetical protein
1285	 49.66	0	1099235..1100269	+	344	18312928	-	PAE1858	-	hypothetical protein
1286	 55.25	0	1100615..1101385	-	256	18312929	-	PAE1861	-	ankyrin repeat-containing protein
1287	 55.80	0	1101537..1102640	+	367	18312930	-	PAE1862	-	hypothetical protein
1288	 47.38	0	1102654..1103301	+	215	18312931	-	PAE1863	-	hypothetical protein
1289	 52.46	0	1103588..1103932	+	114	18312932	-	PAE1864	-	paREP7
1290	 54.42	0	1103829..1104122	+	97	18312933	-	PAE1865	-	paREP7
1291	 55.56	0	1104153..1104314	+	53	18312934	-	PAE1867	-	paREP7
1292	 44.05	-1	1104840..1105259	-	139	18312935	-	PAE1869	-	paREP11
1293	 48.51	0	1105246..1105647	-	133	18312936	-	PAE1870	-	hypothetical protein
51.51	MEAN

5.01	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.