IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1143	 56.75	+1	972652..973680	-	342	18312786	-	PAE1657	-	paREP2b
1144	 52.87	0	973781..974215	+	144	18312787	-	PAE1658	-	paREP2a
1145	 49.21	0	974301..975245	-	314	18312788	-	PAE1659	-	C-5 cytosine-specific DNA methylase
1146	 47.04	0	975494..976084	+	196	18312789	-	PAE1662	-	hypothetical protein
1147	 44.22	-1	976071..976364	-	97	18312790	-	PAE1663	-	hypothetical protein
1148	 57.31	+1	976417..976587	-	56	18312791	-	PAE1665	-	paREP2b
1149	 57.94	+1	976685..976810	+	41	18312792	-	PAE1667	-	paREP2a
1150	 50.88	0	976823..977050	+	75	18312793	-	PAE1668	-	paREP2a
1151	 50.65	0	977064..978611	+	515	18312794	pheT	PAE1669	-	phenylalanyl-tRNA synthetase subunit beta
1152	 46.11	-1	978642..979001	+	119	18312795	-	PAE1670	-	hypothetical protein
1153	 52.34	0	979203..981128	-	641	18312796	-	PAE1671	-	paREP2b
1154	 54.05	0	981274..981384	+	36	18312797	-	PAE1672	-	paREP2a
1155	 54.44	0	981371..982204	+	277	18312798	-	PAE1673	-	paREP2a
1156	 47.44	0	982330..982563	-	77	18312799	-	PAE1674	-	hypothetical protein
1157	 51.81	0	982745..983020	-	91	18312800	-	PAE1676	-	hypothetical protein
1158	 52.10	0	983017..983421	-	134	18312801	-	PAE1677	-	hypothetical protein
1159	 49.10	0	983418..983861	-	147	18312802	-	PAE1678	-	hypothetical protein
1160	 51.92	0	983907..984557	+	216	18312803	-	PAE1679	-	D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural
1161	 46.46	-1	984569..985162	+	197	18312804	-	PAE1681	-	adenylate kinase
1162	 46.45	-1	985368..985931	+	187	18312805	-	PAE1683	-	hypothetical protein
1163	 50.73	0	985918..986946	+	342	18312806	-	PAE1685	-	glycerol dehydrogenase (gldA)
1164	 35.05	-2	987492..987899	-	135	18312807	-	PAE1687	-	hypothetical protein
1165	 50.65	0	987941..989245	+	434	18312808	-	PAE1688	-	malate oxidoreductase (mae)
1166	 49.76	0	989250..990479	-	409	18312809	-	PAE1689	-	citrate synthase
1167	 52.82	0	990607..991191	-	194	18312810	-	PAE1690	-	hypothetical protein
1168	 49.22	0	991230..992582	+	450	18312811	-	PAE1693	-	TBP-interacting protein TIP49
1169	 43.16	-1	992574..993041	-	155	18312812	-	PAE1694	-	hypothetical protein
1170	 50.00	0	993043..994224	-	393	18312813	-	PAE1695	-	paREP2b
1171	 43.16	-1	994202..994486	-	94	18312814	-	PAE1696	-	paREP2b
1172	 58.05	+1	994558..994905	+	115	18312815	-	PAE1698	-	paREP2a
1173	 49.17	0	995070..996578	-	502	18312816	-	PAE1702	-	hypothetical protein
1174	 51.66	0	996617..997189	-	190	18312817	-	PAE1703	-	hypothetical protein
1175	 49.17	0	997444..997563	-	39	18312818	-	PAE1704	-	hypothetical protein
1176	 52.18	0	997704..999581	-	625	18312819	-	PAE1706	-	paREP2b
1177	 52.38	0	999581..999664	+	27	18312820	-	PAE1707	-	paREP2a
1178	 49.06	0	999677..999835	+	52	18312821	-	PAE1708	-	paREP2a
1179	 50.54	0	999789..1000067	+	92	18312822	-	PAE1709	-	paREP2a
1180	 42.94	-1	1000064..1000750	+	228	18312823	-	PAE1710	-	hypothetical protein
1181	 55.56	0	1000739..1001071	-	110	18312824	rpl12p	PAE1712	-	50S ribosomal protein L12P
1182	 48.04	0	1001115..1001318	-	67	18312825	-	PAE1714	-	ribosomal protein L38
1183	 62.98	+2	1001462..1002004	-	180	18312826	-	PAE1715	-	hypothetical protein
1184	 49.51	0	1002116..1003042	+	308	18312827	-	PAE1716	-	carboxyphosphonoenolpyruvate phosphonomutase (prpB)
1185	 53.89	0	1003035..1004396	+	453	18312828	-	PAE1717	-	propionate catabolism protein prpD
1186	 40.17	-2	1004477..1004593	-	38	18312829	-	PAE1717a	-	hypothetical protein
1187	 52.35	0	1005028..1007094	+	688	18312830	-	PAE1718	-	hypothetical protein
1188	 56.63	+1	1007099..1007626	+	175	18312831	-	PAE1719	-	hypothetical protein
1189	 48.92	0	1008019..1008204	+	61	18312832	-	PAE1720	-	hypothetical protein
1190	 51.71	0	1008195..1009070	+	291	18312833	-	PAE1722	-	hypothetical protein
1191	 41.88	-1	1009425..1009997	+	190	18312834	-	PAE1723	-	hypothetical protein
1192	 50.71	0	1010358..1011341	+	327	18312835	-	PAE1725	-	thioredoxin reductase (trxB)
1193	 50.11	0	1011361..1012242	-	293	18312836	-	PAE1726	-	hypothetical protein
1194	 48.31	0	1012246..1013073	-	275	18312837	-	PAE1727	-	protease, conjectural
1195	 48.64	0	1013189..1013665	+	158	18312838	rps19p	PAE1729	-	30S ribosomal protein S19P
1196	 52.46	0	1013742..1014107	+	121	161485622	rps17p	PAE1730	-	30S ribosomal protein S17P
1197	 56.61	+1	1014119..1014307	-	62	18312840	-	PAE1731	-	paREP2a
1198	 52.38	0	1014320..1014403	-	27	18312841	-	PAE1733	-	paREP2a
1199	 53.04	0	1014403..1016325	+	640	18312842	-	PAE1734	-	paREP2b
1200	 49.92	0	1016329..1016979	+	216	18312843	-	PAE1735	-	hypothetical protein
1201	 46.61	0	1017035..1018066	-	343	18312844	-	PAE1736	-	beta-glucosidase
1202	 53.52	0	1018206..1018631	-	141	18312845	-	PAE1738	-	hypothetical protein
1203	 50.53	0	1018624..1019658	-	344	18312846	-	PAE1740	-	glyceraldehyde-3-phosphate dehydrogenase
1204	 47.92	0	1019655..1020881	-	408	18312847	-	PAE1742	-	phosphoglycerate kinase
1205	 44.78	-1	1020969..1021562	+	197	18312848	-	PAE1744	-	hypothetical protein
1206	 48.60	0	1021646..1023472	+	608	18312849	-	PAE1748	-	threonyl-tRNA synthetase
1207	 46.72	0	1023534..1023914	+	126	18312850	-	PAE1749	-	S-adenosylmethionine decarboxylase proenzyme
1208	 47.76	0	1024073..1024987	+	304	18312851	-	PAE1752	-	hypothetical protein
1209	 50.30	0	1025513..1026019	-	168	18312852	-	PAE1755	-	hypothetical protein
1210	 51.57	0	1026027..1028252	-	741	18312853	-	PAE1756	-	hypothetical protein
1211	 57.33	+1	1028505..1028954	-	149	18312854	-	PAE1759	-	molybdopterin-guanine dinucleotide biosynthesis protein B, conjectural
1212	 50.83	0	1028951..1029253	-	100	18312855	-	PAE1760	-	hypothetical protein
1213	 55.78	0	1029250..1030305	-	351	18312856	-	PAE1761	-	myo-inositol-1-phosphate synthase, conjectural
1214	 48.04	0	1030363..1031967	-	534	18312857	-	PAE1762	-	iron-sulfur binding reductase,
1215	 43.26	-1	1032167..1032811	-	214	18312858	-	PAE1763	-	hypothetical protein
1216	 53.54	0	1032792..1034345	-	517	18312859	-	PAE1764	-	GTP-binding protein
1217	 39.22	-2	1034552..1034653	-	33	18312860	-	PAE1765	-	hypothetical protein
1218	 55.28	0	1034650..1034772	-	40	18312861	-	PAE1765a	-	paREP2a
1219	 57.14	+1	1034745..1034996	-	83	18312862	-	PAE1766	-	paREP2a
1220	 53.44	0	1034986..1035363	-	125	18312863	-	PAE1768	-	paREP2a
1221	 51.48	0	1035524..1038262	+	912	18312864	-	PAE1770	-	paREP2b
1222	 51.89	0	1038248..1040413	-	721	18312865	hppA	PAE1771	-	membrane-bound proton-translocating pyrophosphatase
1223	 54.46	0	1040512..1040724	+	70	18312866	-	PAE1772	-	paREP2a
1224	 51.22	0	1040828..1043131	+	767	18312867	-	PAE1773	-	H+-transporting ATP synthase subunit I (atpI), conjectural
1225	 54.32	0	1043131..1043802	+	223	18312868	-	PAE1774	-	hypothetical protein
1226	 49.07	0	1043842..1044756	+	304	18312869	-	PAE1775	-	hypothetical protein
1227	 54.52	0	1044710..1045063	-	117	18312870	-	PAE1775a	-	hypothetical protein
1228	 47.74	0	1045066..1045308	-	80	18312871	-	PAE1777	-	hypothetical protein
1229	 49.12	0	1045308..1045535	-	75	18312872	-	PAE1778	-	ribosomal protein L29
1230	 47.88	0	1045574..1046164	-	196	18312873	rps3p	PAE1779	-	30S ribosomal protein S3P
1231	 50.50	0	1046196..1046999	-	267	18312874	-	PAE1780	-	protein part 2, authentic frameshift
1232	 50.17	0	1046951..1047247	-	98	18312875	-	PAE1780a	-	protein part 1, authentic frameshift
1233	 51.87	0	1047613..1048119	-	168	18312876	rpl22p	PAE1782	-	50S ribosomal protein L22P
1234	 51.99	0	1048219..1049547	-	442	18312877	-	PAE1783	-	hypothetical protein
1235	 59.21	+1	1049618..1050448	+	276	18312878	-	PAE1784	-	hypothetical protein
1236	 54.82	0	1050430..1051113	+	227	18312879	-	PAE1785	-	hypothetical protein
1237	 52.04	0	1051110..1051574	-	154	18312880	-	PAE1786	-	hypothetical protein
1238	 45.74	-1	1051627..1052472	-	281	18312881	-	PAE1788	-	hypothetical protein
1239	 52.36	0	1052911..1054245	+	444	18312882	-	PAE1789	-	hypothetical protein
1240	 54.76	0	1054268..1054477	+	69	18312883	-	PAE1790	-	hypothetical protein
1241	 60.94	+1	1054486..1055061	-	191	18312884	-	PAE1792	-	hypothetical protein
1242	 51.71	0	1055844..1056224	-	126	18312885	-	PAE1796	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.